Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF129

Experiment: Ying_OrganicAcid7 rep C; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF128 and GFF129 are separated by 4 nucleotidesGFF129 and GFF130 are separated by 22 nucleotides GFF128 - Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8), at 141,937 to 144,084 GFF128 GFF129 - Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8), at 144,089 to 145,666 GFF129 GFF130 - TRAP transporter solute receptor, unknown substrate 3, at 145,689 to 146,750 GFF130 Position (kb) 144 145 146Strain fitness (log2 ratio) -1 0 1at 144.251 kb on + strand, within GFF129at 144.254 kb on + strand, within GFF129at 144.873 kb on - strand, within GFF129at 144.887 kb on + strand, within GFF129at 145.448 kb on + strand, within GFF129

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1
remove
144,251 + GFF129 0.10 -0.2
144,254 + GFF129 0.10 +0.1
144,873 - GFF129 0.50 -0.4
144,887 + GFF129 0.51 -0.0
145,448 + GFF129 0.86 -1.0

Or see this region's nucleotide sequence