Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1058 and GFF1059 are separated by 45 nucleotides GFF1059 and GFF1060 are separated by 190 nucleotides GFF1060 and GFF1061 are separated by 406 nucleotides
GFF1058 - hypothetical protein, at 798,241 to 799,659
GFF1058
GFF1059 - hypothetical protein, at 799,705 to 800,004
GFF1059
GFF1060 - Adenylate cyclase (EC 4.6.1.1), at 800,195 to 801,736
GFF1060
GFF1061 - Aerotaxis sensor receptor protein, at 802,143 to 803,627
GFF1061
Position (kb) 800
801
802 Strain fitness (log2 ratio) -1
0
1 at 799.296 kb on + strand, within GFF1058 at 799.370 kb on + strand, within GFF1058 at 799.505 kb on + strand, within GFF1058 at 799.588 kb on - strand at 799.908 kb on - strand, within GFF1059 at 799.908 kb on - strand, within GFF1059 at 799.908 kb on - strand, within GFF1059 at 800.459 kb on + strand, within GFF1060 at 800.459 kb on + strand, within GFF1060 at 800.459 kb on + strand, within GFF1060 at 800.460 kb on - strand, within GFF1060 at 800.742 kb on - strand, within GFF1060 at 800.943 kb on + strand, within GFF1060 at 800.943 kb on + strand, within GFF1060 at 800.944 kb on - strand, within GFF1060 at 800.975 kb on + strand, within GFF1060 at 800.976 kb on - strand, within GFF1060 at 800.976 kb on - strand, within GFF1060 at 801.141 kb on - strand, within GFF1060 at 801.141 kb on - strand, within GFF1060 at 801.631 kb on + strand at 801.743 kb on + strand at 801.743 kb on + strand at 801.743 kb on + strand at 801.744 kb on - strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.757 kb on - strand at 801.757 kb on - strand at 801.818 kb on + strand at 801.818 kb on + strand at 801.819 kb on - strand at 801.875 kb on + strand at 801.875 kb on + strand at 801.876 kb on - strand at 801.876 kb on - strand at 801.986 kb on - strand at 801.986 kb on - strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.007 kb on + strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.008 kb on - strand at 802.074 kb on + strand at 802.075 kb on - strand at 802.149 kb on - strand at 802.254 kb on + strand at 802.389 kb on + strand, within GFF1061 at 802.389 kb on + strand, within GFF1061 at 802.389 kb on + strand, within GFF1061 at 802.389 kb on + strand, within GFF1061 at 802.389 kb on + strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.390 kb on - strand, within GFF1061 at 802.569 kb on - strand, within GFF1061 at 802.679 kb on + strand, within GFF1061
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 799,296 + GFF1058 0.74 -0.9 799,370 + GFF1058 0.80 -1.4 799,505 + GFF1058 0.89 -0.0 799,588 - +0.4 799,908 - GFF1059 0.68 -0.6 799,908 - GFF1059 0.68 +0.1 799,908 - GFF1059 0.68 +0.6 800,459 + GFF1060 0.17 +1.2 800,459 + GFF1060 0.17 +0.7 800,459 + GFF1060 0.17 -0.8 800,460 - GFF1060 0.17 -0.0 800,742 - GFF1060 0.35 +0.3 800,943 + GFF1060 0.49 -0.6 800,943 + GFF1060 0.49 -0.3 800,944 - GFF1060 0.49 -0.0 800,975 + GFF1060 0.51 +0.8 800,976 - GFF1060 0.51 -0.3 800,976 - GFF1060 0.51 +0.1 801,141 - GFF1060 0.61 +0.0 801,141 - GFF1060 0.61 +0.1 801,631 + +0.4 801,743 + +0.4 801,743 + +0.2 801,743 + -1.2 801,744 - -0.5 801,756 + -0.8 801,756 + -0.2 801,756 + -0.2 801,756 + -0.6 801,757 - -0.6 801,757 - +1.0 801,818 + -0.6 801,818 + -0.7 801,819 - +0.1 801,875 + -0.3 801,875 + +0.0 801,876 - -1.2 801,876 - -0.2 801,986 - +0.7 801,986 - -0.3 802,007 + +0.1 802,007 + +0.2 802,007 + -1.0 802,007 + -0.9 802,007 + -1.2 802,007 + -0.0 802,007 + +0.3 802,007 + -0.4 802,007 + -0.2 802,007 + +0.1 802,007 + -0.2 802,007 + -0.6 802,008 - +0.3 802,008 - +0.2 802,008 - -0.7 802,008 - -0.7 802,008 - -0.8 802,008 - +1.0 802,008 - +0.8 802,008 - +0.0 802,008 - +0.4 802,008 - +0.2 802,008 - -0.1 802,008 - -0.8 802,008 - -0.5 802,074 + -0.7 802,075 - +0.1 802,149 - -0.8 802,254 + +0.1 802,389 + GFF1061 0.17 -0.7 802,389 + GFF1061 0.17 -0.1 802,389 + GFF1061 0.17 +0.2 802,389 + GFF1061 0.17 -0.1 802,389 + GFF1061 0.17 -0.1 802,390 - GFF1061 0.17 -1.0 802,390 - GFF1061 0.17 +0.3 802,390 - GFF1061 0.17 +0.2 802,390 - GFF1061 0.17 +0.2 802,390 - GFF1061 0.17 +1.6 802,390 - GFF1061 0.17 -0.7 802,390 - GFF1061 0.17 -0.3 802,569 - GFF1061 0.29 +1.1 802,679 + GFF1061 0.36 +0.8
Or see this region's nucleotide sequence