Strain Fitness in Escherichia fergusonii Becca around EFB2_03590

Experiment: BHIS_CaCl2 with hk phage cocktail 1 MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 with hk phage cocktail 1 MOI
3,751,470	+				+0.1
3,751,471	-				-1.7
3,751,471	-				-0.4
3,751,474	+				-0.0
3,751,474	+				+0.9
3,751,474	+				-1.6
3,751,474	+				+0.4
3,751,474	+				-0.1
3,751,474	+				-0.1
3,751,474	+				-1.8
3,751,474	+				+0.8
3,751,475	-				+0.4
3,751,475	-				-0.0
3,751,475	-				-1.1
3,751,475	-				-1.8
3,751,475	-				-1.8
3,751,475	-				-1.1
3,751,475	-				+0.8
3,751,501	+				-2.5
3,751,501	+				-1.1
3,751,501	+				-2.8
3,751,501	+				-0.3
3,751,501	+				-1.6
3,751,502	-				-3.3
3,751,502	-				-3.2
3,751,502	-				-2.3
3,751,508	+				-1.4
3,751,560	-		EFB2_03589	0.16	-1.2
3,751,560	-		EFB2_03589	0.16	-0.5
3,751,578	+		EFB2_03589	0.19	-1.6
3,751,578	+		EFB2_03589	0.19	-3.4
3,751,579	-		EFB2_03589	0.19	-3.8
3,751,579	-		EFB2_03589	0.19	-2.0
3,751,579	-		EFB2_03589	0.19	-2.7
3,751,579	-		EFB2_03589	0.19	-2.8
3,751,579	-		EFB2_03589	0.19	-0.2
3,751,623	-		EFB2_03589	0.27	-2.0
3,751,726	+		EFB2_03589	0.46	-1.8
3,751,726	+		EFB2_03589	0.46	-0.4
3,751,726	+		EFB2_03589	0.46	-2.9
3,751,726	+		EFB2_03589	0.46	-1.9
3,751,777	-		EFB2_03589	0.55	-2.3
3,751,871	-		EFB2_03589	0.72	-3.7
3,751,903	+		EFB2_03589	0.78	-2.0
3,751,903	+		EFB2_03589	0.78	-3.5
3,751,903	+		EFB2_03589	0.78	-3.1
3,751,903	+		EFB2_03589	0.78	-3.8
3,751,904	-		EFB2_03589	0.78	-0.8
3,751,904	-		EFB2_03589	0.78	-3.3
3,751,904	-		EFB2_03589	0.78	-1.0
3,751,923	+		EFB2_03589	0.82	+2.2
3,751,924	-		EFB2_03589	0.82	-2.9
3,751,924	-		EFB2_03589	0.82	-2.6
3,751,924	-		EFB2_03589	0.82	-2.0
3,751,924	-		EFB2_03589	0.82	-2.2
3,751,985	+				-1.9
3,751,996	+				-0.1
3,751,996	+				+0.3
3,751,997	-				-2.7
3,751,997	-				-2.9
3,751,997	-				-2.3
3,751,997	-				-3.3
3,752,024	+				-1.2
3,752,024	+				-1.9
3,752,024	+				-2.4
3,752,024	+				-1.6
3,752,024	+				-0.6
3,752,024	+				-2.6
3,752,024	+				-1.7
3,752,024	+				-3.1
3,752,024	+				-0.9
3,752,024	+				-2.7
3,752,024	+				-2.3
3,752,024	+				-2.6
3,752,024	+				-2.2
3,752,024	+				-1.1
3,752,024	+				-1.6
3,752,024	+				-2.6
3,752,024	+				-3.4
3,752,025	-				+0.4
3,752,025	-				-0.8
3,752,025	-				-2.8
3,752,025	-				-1.6
3,752,025	-				-1.5
3,752,025	-				-0.6
3,752,025	-				-2.1
3,752,025	-				-1.5
3,752,025	-				-1.7
3,752,025	-				-3.8
3,752,025	-				-2.0
3,752,025	-				+0.2
3,752,025	-				-0.0
3,752,025	-				-1.4
3,752,025	-				+0.0
3,752,025	-				-2.7
3,752,030	+				-2.4
3,752,030	+				-2.5
3,752,030	+				-1.5
3,752,030	+				-2.2
3,752,030	+				-2.4
3,752,030	+				-0.6
3,752,030	+				-0.0
3,752,030	+				-3.0
3,752,030	+				-0.4
3,752,030	+				-2.6
3,752,030	+				-1.2
3,752,031	-				-0.7
3,752,031	-				-1.0
3,752,031	-				-3.6
3,752,031	-				+1.5
3,752,031	-				-0.1
3,752,031	-				-0.7
3,752,031	-				-2.5
3,752,031	-				-1.1
3,752,031	-				+0.0
3,752,031	-				-1.5
3,752,031	-				+0.8
3,752,031	-				+1.2
3,752,031	-				+0.4
3,752,031	-				-1.1
3,752,031	-				-1.9
3,752,031	-				+1.6
3,752,031	-				-0.6
3,752,031	-				-0.5
3,752,031	-				+0.4
3,752,031	-				-0.6
3,752,043	+				-3.0
3,752,051	+				-3.2
3,752,052	-				+1.6
3,752,073	+				+0.2
3,752,073	+				-2.6
3,752,073	+				-0.6
3,752,083	-				-0.4
3,752,136	+				+0.1
3,752,137	-				+0.3
3,752,145	+				-2.1
3,752,145	+				-2.2
3,752,145	+				-1.2
3,752,146	-				-1.8
3,752,146	-				+0.1
3,752,146	-				-0.6
3,752,146	-				-1.9
3,752,146	-				+0.4
3,752,146	-				-0.2
3,752,152	+				-2.3
3,752,152	+				+0.2
3,752,152	+				-1.9
3,752,153	-				-0.5
3,752,153	-				-0.4
3,752,153	-				-1.1
3,752,153	-				-0.7
3,752,221	+		EFB2_03590	0.12	-1.9
3,752,221	+		EFB2_03590	0.12	+2.4
3,752,221	+		EFB2_03590	0.12	-0.7
3,752,221	+		EFB2_03590	0.12	-1.1
3,752,221	+		EFB2_03590	0.12	+3.0
3,752,221	+		EFB2_03590	0.12	+0.6
3,752,221	+		EFB2_03590	0.12	-0.1
3,752,221	+		EFB2_03590	0.12	-1.9
3,752,221	+		EFB2_03590	0.12	-1.4
3,752,221	+		EFB2_03590	0.12	-0.4
3,752,221	+		EFB2_03590	0.12	-0.6
3,752,222	-		EFB2_03590	0.12	-0.3
3,752,222	-		EFB2_03590	0.12	-1.1
3,752,222	-		EFB2_03590	0.12	+0.1
3,752,222	-		EFB2_03590	0.12	+0.6
3,752,222	-		EFB2_03590	0.12	-1.3
3,752,222	-		EFB2_03590	0.12	+0.4
3,752,222	-		EFB2_03590	0.12	+0.1
3,752,222	-		EFB2_03590	0.12	+0.7
3,752,222	-		EFB2_03590	0.12	+0.1
3,752,222	-		EFB2_03590	0.12	-1.1
3,752,223	+		EFB2_03590	0.12	-1.3
3,752,223	+		EFB2_03590	0.12	-0.0
3,752,223	+		EFB2_03590	0.12	-1.5
3,752,223	+		EFB2_03590	0.12	-0.6
3,752,223	+		EFB2_03590	0.12	+2.3
3,752,224	-		EFB2_03590	0.12	-0.1
3,752,224	-		EFB2_03590	0.12	-0.4
3,752,224	-		EFB2_03590	0.12	+1.6
3,752,224	-		EFB2_03590	0.12	+0.5
3,752,224	-		EFB2_03590	0.12	-0.2
3,752,224	-		EFB2_03590	0.12	+0.1
3,752,224	-		EFB2_03590	0.12	-0.2
3,752,246	+		EFB2_03590	0.18	+2.8
3,752,246	+		EFB2_03590	0.18	-0.2
3,752,246	+		EFB2_03590	0.18	-0.7
3,752,246	+		EFB2_03590	0.18	-2.4
3,752,246	+		EFB2_03590	0.18	-0.1
3,752,247	-		EFB2_03590	0.19	+0.4
3,752,299	+		EFB2_03590	0.32	-0.3
3,752,299	+		EFB2_03590	0.32	+1.0
3,752,305	+		EFB2_03590	0.34	+0.1
3,752,305	+		EFB2_03590	0.34	-1.2
3,752,314	+		EFB2_03590	0.36	+1.9
3,752,375	+		EFB2_03590	0.52	-0.6
3,752,375	+		EFB2_03590	0.52	+0.6
3,752,375	+		EFB2_03590	0.52	+0.1
3,752,375	+		EFB2_03590	0.52	-0.6
3,752,375	+		EFB2_03590	0.52	+1.3
3,752,376	-		EFB2_03590	0.53	-0.8
3,752,376	-		EFB2_03590	0.53	-0.8
3,752,376	-		EFB2_03590	0.53	+0.4
3,752,379	+		EFB2_03590	0.53	-1.1
3,752,379	+		EFB2_03590	0.53	-0.6
3,752,379	+		EFB2_03590	0.53	-0.1
3,752,379	+		EFB2_03590	0.53	+0.3
3,752,379	+		EFB2_03590	0.53	+1.9
3,752,379	+		EFB2_03590	0.53	-0.1
3,752,379	+		EFB2_03590	0.53	+0.8
3,752,379	+		EFB2_03590	0.53	-0.1
3,752,379	+		EFB2_03590	0.53	+0.6
3,752,379	+		EFB2_03590	0.53	-1.2
3,752,380	-		EFB2_03590	0.54	-1.9
3,752,380	-		EFB2_03590	0.54	-0.8
3,752,380	-		EFB2_03590	0.54	+0.8
3,752,380	-		EFB2_03590	0.54	+0.9
3,752,380	-		EFB2_03590	0.54	-0.2
3,752,380	-		EFB2_03590	0.54	+0.3
3,752,380	-		EFB2_03590	0.54	+1.4
3,752,380	-		EFB2_03590	0.54	-0.2
3,752,380	-		EFB2_03590	0.54	-0.1
3,752,380	-		EFB2_03590	0.54	-0.7
3,752,380	-		EFB2_03590	0.54	-0.4
3,752,380	-		EFB2_03590	0.54	+1.2
3,752,380	-		EFB2_03590	0.54	+0.6
3,752,380	-		EFB2_03590	0.54	-0.6
3,752,380	-		EFB2_03590	0.54	+1.3
3,752,380	-		EFB2_03590	0.54	-0.8
3,752,401	-		EFB2_03590	0.59	-0.7
3,752,461	+		EFB2_03590	0.75	-1.6
3,752,478	-		EFB2_03590	0.80	+0.3
3,752,480	+		EFB2_03590	0.80	-1.3
3,752,481	-		EFB2_03590	0.80	-0.9
3,752,490	-		EFB2_03590	0.83	+1.0
3,752,490	-		EFB2_03590	0.83	+0.8
3,752,490	-		EFB2_03590	0.83	-0.5
3,752,537	+				-0.6
3,752,537	+				-0.6
3,752,537	+				+1.6
3,752,538	-				-0.4
3,752,554	+				+0.3
3,752,554	+				-0.3
3,752,554	+				+0.0
3,752,555	-				+0.2
3,752,572	+				+0.6
3,752,572	+				-1.4
3,752,572	+				-0.5
3,752,573	-				-0.7
3,752,573	-				+1.2
3,752,573	-				-0.3
3,752,583	+				+0.0
3,752,588	+				-0.2
3,752,589	-				+0.7
3,752,589	-				+0.3
3,752,620	+				-1.9
3,752,620	+				+0.9
3,752,621	-				+1.5
3,752,668	+				-0.9
3,752,712	+		EFB2_03591	0.17	-0.6
3,752,725	+		EFB2_03591	0.19	-3.0
3,752,878	+		EFB2_03591	0.48	-0.3
3,752,878	+		EFB2_03591	0.48	-0.8
3,752,878	+		EFB2_03591	0.48	-0.5
3,752,878	+		EFB2_03591	0.48	-0.6
3,752,878	+		EFB2_03591	0.48	+0.7
3,752,878	+		EFB2_03591	0.48	-0.9
3,752,878	+		EFB2_03591	0.48	-0.4
3,752,879	-		EFB2_03591	0.48	-0.7
3,752,879	-		EFB2_03591	0.48	-1.6
3,752,879	-		EFB2_03591	0.48	-0.9
3,752,880	+		EFB2_03591	0.48	+0.3
3,752,880	+		EFB2_03591	0.48	-1.3
3,752,881	-		EFB2_03591	0.49	-0.6
3,752,953	+		EFB2_03591	0.62	-0.1
3,752,954	-		EFB2_03591	0.62	-0.5
3,752,954	-		EFB2_03591	0.62	+2.2
3,752,959	+		EFB2_03591	0.63	+0.3
3,752,959	+		EFB2_03591	0.63	-0.6
3,752,959	+		EFB2_03591	0.63	+0.1
3,752,959	+		EFB2_03591	0.63	+0.5
3,752,960	-		EFB2_03591	0.64	-1.9
3,752,960	-		EFB2_03591	0.64	+0.9
3,752,960	-		EFB2_03591	0.64	+0.3
3,752,989	-		EFB2_03591	0.69	-1.1
3,753,011	-		EFB2_03591	0.73	-1.5
3,753,011	-		EFB2_03591	0.73	+0.2
3,753,011	-		EFB2_03591	0.73	+0.2
3,753,077	+		EFB2_03591	0.86	-1.4
3,753,077	+		EFB2_03591	0.86	-0.6
3,753,078	-		EFB2_03591	0.86	-0.2
3,753,149	+				+0.1
3,753,164	+				-0.8
3,753,164	+				-0.8
3,753,164	+				+0.9
3,753,164	+				+0.9
3,753,164	+				-1.1
3,753,164	+				+0.7
3,753,164	+				+0.4
3,753,164	+				+0.2
3,753,164	+				-0.6
3,753,164	+				-0.9
3,753,164	+				-0.1
3,753,164	+				+0.2
3,753,164	+				-0.3
3,753,164	+				+0.3
3,753,164	+				+0.4
3,753,164	+				-1.4
3,753,164	+				+0.4
3,753,164	+				+1.4
3,753,164	+				-1.2
3,753,164	+				+1.2
3,753,164	+				+3.1
3,753,164	+				-2.1
3,753,164	+				-3.8
3,753,164	+				-0.6
3,753,164	+				-3.1
3,753,164	+				+0.6
3,753,164	+				+0.9
3,753,164	+				+0.0
3,753,164	+				+0.6
3,753,165	-				+1.2
3,753,165	-				+0.5
3,753,165	-				-1.7
3,753,165	-				-1.6
3,753,165	-				-0.0
3,753,165	-				-0.4
3,753,165	-				+1.2
3,753,165	-				-1.8
3,753,165	-				-0.3
3,753,165	-				-0.1
3,753,165	-				-0.8
3,753,165	-				-0.6
3,753,165	-				-0.5
3,753,165	-				+0.3
3,753,165	-				-0.3
3,753,165	-				-1.2
3,753,165	-				-1.6
3,753,165	-				-0.1
3,753,165	-				-0.5
3,753,165	-				+0.4
3,753,165	-				-0.6
3,753,165	-				+0.4
3,753,165	-				-1.1
3,753,165	-				+0.4
3,753,165	-				-0.4
3,753,165	-				+3.2
3,753,165	-				+0.5
3,753,165	-				-0.3
3,753,220	+		EFB2_03592	0.34	-0.4
3,753,220	+		EFB2_03592	0.34	-1.4
3,753,221	-		EFB2_03592	0.35	-0.2
3,753,221	-		EFB2_03592	0.35	+1.0
3,753,221	-		EFB2_03592	0.35	+0.3
3,753,221	-		EFB2_03592	0.35	-0.4
3,753,274	+		EFB2_03592	0.67	-0.2
3,753,274	+		EFB2_03592	0.67	+0.2
3,753,274	+		EFB2_03592	0.67	+0.1
3,753,275	-		EFB2_03592	0.68	-0.8
3,753,275	-		EFB2_03592	0.68	+1.8
3,753,275	-		EFB2_03592	0.68	+0.8
3,753,275	-		EFB2_03592	0.68	-0.6
3,753,285	+		EFB2_03592	0.74	+0.1
3,753,286	-		EFB2_03592	0.75	+1.1
3,753,299	-		EFB2_03592	0.83	+0.5
3,753,331	+				+0.4
3,753,331	+				-1.0
3,753,331	+				+0.1
3,753,331	+				+1.7
3,753,332	-				-0.0
3,753,332	-				+0.4
3,753,332	-				-0.2
3,753,332	-				-0.7
3,753,332	-				+0.8
3,753,345	-				-0.3
3,753,355	+				+0.8
3,753,355	+				+0.2
3,753,391	+				+0.8
3,753,397	+				-0.9
3,753,397	+				-0.3
3,753,406	+				-0.8
3,753,422	+				+0.7
3,753,422	+				-0.9
3,753,422	+				-0.2
3,753,422	+				+0.6
3,753,422	+				-0.1
3,753,422	+				+1.1
3,753,423	-				+0.1
3,753,423	-				+0.8
3,753,423	-				+0.1
3,753,423	-				-0.5
3,753,424	+				-0.8
3,753,424	+				+0.7
3,753,424	+				+0.4
3,753,424	+				-0.6
3,753,425	-				+1.9
3,753,498	+				-1.1
3,753,498	+				+0.3
3,753,498	+				-0.4
3,753,498	+				-1.2
3,753,499	-				+0.6
3,753,499	-				+0.1
3,753,501	+				-0.9
3,753,501	+				+0.2
3,753,501	+				-1.0
3,753,501	+				+0.6
3,753,501	+				+2.0
3,753,502	-				-0.1
3,753,516	+				+0.4
3,753,516	+				+0.2
3,753,516	+				-0.5
3,753,516	+				-0.3
3,753,516	+				-0.2
3,753,516	+				-0.5
3,753,516	+				-0.7
3,753,516	+				+0.1
3,753,516	+				-0.7
3,753,516	+				-1.0
3,753,516	+				+1.3
3,753,516	+				-1.2
3,753,516	+				-0.9
3,753,516	+				+0.6
3,753,516	+				+1.4
3,753,517	-				-0.0
3,753,517	-				-0.6
3,753,517	-				+0.6
3,753,517	-				+1.0
3,753,517	-				-2.0
3,753,517	-				+0.1
3,753,517	-				-0.6
3,753,517	-				+0.8
3,753,536	+				+0.3
3,753,536	+				+0.2
3,753,536	+				-1.2
3,753,537	-				+2.6
3,753,539	+				-1.6
3,753,539	+				+0.5
3,753,539	+				+1.5
3,753,539	+				-1.1
3,753,540	-				+0.5
3,753,540	-				+1.2
3,753,540	-				-1.3