Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05423

Experiment: Wheat Arabinoxylan 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05421 and BACOVA_05422 are separated by 348 nucleotidesBACOVA_05422 and BACOVA_05423 are separated by 13 nucleotidesBACOVA_05423 and BACOVA_05424 are separated by 28 nucleotides BACOVA_05421: BACOVA_05421 - helicase C-terminal domain protein, at 901,520 to 904,501 _05421 BACOVA_05422: BACOVA_05422 - hypothetical protein, at 904,850 to 905,011 _05422 BACOVA_05423: BACOVA_05423 - site-specific recombinase, phage integrase family, at 905,025 to 906,197 _05423 BACOVA_05424: BACOVA_05424 - site-specific recombinase, phage integrase family, at 906,226 to 907,494 _05424 Position (kb) 905 906 907Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 904.054 kb on - strand, within BACOVA_05421at 904.066 kb on + strand, within BACOVA_05421at 904.067 kb on - strand, within BACOVA_05421at 904.081 kb on + strand, within BACOVA_05421at 904.182 kb on + strand, within BACOVA_05421at 904.186 kb on + strand, within BACOVA_05421at 904.186 kb on + strand, within BACOVA_05421at 904.186 kb on + strand, within BACOVA_05421at 904.186 kb on + strand, within BACOVA_05421at 904.205 kb on + strandat 904.248 kb on - strandat 904.287 kb on + strandat 904.287 kb on + strandat 904.288 kb on - strandat 904.301 kb on + strandat 904.302 kb on - strandat 904.314 kb on + strandat 904.314 kb on + strandat 904.370 kb on + strandat 904.370 kb on + strandat 904.390 kb on - strandat 904.415 kb on + strandat 904.468 kb on + strandat 904.538 kb on + strandat 904.539 kb on - strandat 904.539 kb on - strandat 904.540 kb on + strandat 904.559 kb on + strandat 904.630 kb on - strandat 904.633 kb on + strandat 904.634 kb on - strandat 904.634 kb on - strandat 904.643 kb on + strandat 904.643 kb on + strandat 904.649 kb on + strandat 904.652 kb on + strandat 904.666 kb on + strandat 904.666 kb on + strandat 904.670 kb on + strandat 904.670 kb on + strandat 904.815 kb on + strandat 904.826 kb on - strandat 904.826 kb on - strandat 904.826 kb on - strandat 905.009 kb on + strandat 905.018 kb on - strandat 905.019 kb on + strandat 905.020 kb on - strandat 905.048 kb on - strandat 905.109 kb on + strandat 905.110 kb on - strandat 905.121 kb on + strandat 905.121 kb on + strandat 905.142 kb on + strandat 905.142 kb on + strandat 905.190 kb on - strand, within BACOVA_05423at 905.211 kb on - strand, within BACOVA_05423at 905.269 kb on + strand, within BACOVA_05423at 905.269 kb on + strand, within BACOVA_05423at 905.312 kb on + strand, within BACOVA_05423at 905.312 kb on + strand, within BACOVA_05423at 905.313 kb on - strand, within BACOVA_05423at 905.328 kb on + strand, within BACOVA_05423at 905.486 kb on + strand, within BACOVA_05423at 905.528 kb on + strand, within BACOVA_05423at 905.554 kb on - strand, within BACOVA_05423at 905.679 kb on - strand, within BACOVA_05423at 905.679 kb on - strand, within BACOVA_05423at 905.681 kb on + strand, within BACOVA_05423at 905.681 kb on + strand, within BACOVA_05423at 905.681 kb on + strand, within BACOVA_05423at 905.681 kb on + strand, within BACOVA_05423at 905.681 kb on + strand, within BACOVA_05423at 905.682 kb on - strand, within BACOVA_05423at 905.682 kb on - strand, within BACOVA_05423at 905.683 kb on + strand, within BACOVA_05423at 905.704 kb on + strand, within BACOVA_05423at 905.705 kb on - strand, within BACOVA_05423at 905.705 kb on - strand, within BACOVA_05423at 905.708 kb on + strand, within BACOVA_05423at 905.708 kb on + strand, within BACOVA_05423at 905.784 kb on + strand, within BACOVA_05423at 905.784 kb on + strand, within BACOVA_05423at 905.784 kb on + strand, within BACOVA_05423at 905.785 kb on - strand, within BACOVA_05423at 905.835 kb on + strand, within BACOVA_05423at 905.836 kb on - strand, within BACOVA_05423at 905.836 kb on - strand, within BACOVA_05423at 905.836 kb on - strand, within BACOVA_05423at 905.836 kb on - strand, within BACOVA_05423at 905.839 kb on + strand, within BACOVA_05423at 905.840 kb on - strand, within BACOVA_05423at 905.840 kb on - strand, within BACOVA_05423at 905.840 kb on - strand, within BACOVA_05423at 905.874 kb on - strand, within BACOVA_05423at 905.875 kb on + strand, within BACOVA_05423at 905.875 kb on + strand, within BACOVA_05423at 905.939 kb on - strand, within BACOVA_05423at 905.968 kb on + strand, within BACOVA_05423at 905.968 kb on + strand, within BACOVA_05423at 905.969 kb on - strand, within BACOVA_05423at 906.018 kb on - strand, within BACOVA_05423at 906.083 kb on + strandat 906.133 kb on - strandat 906.220 kb on - strandat 906.220 kb on - strandat 906.220 kb on - strandat 906.220 kb on - strandat 906.233 kb on + strandat 906.234 kb on - strandat 906.234 kb on - strandat 906.234 kb on - strandat 906.234 kb on - strandat 906.238 kb on - strandat 906.269 kb on + strandat 906.269 kb on + strandat 906.269 kb on + strandat 906.270 kb on - strandat 906.277 kb on + strandat 906.289 kb on + strandat 906.289 kb on + strandat 906.290 kb on - strandat 906.348 kb on - strandat 906.398 kb on + strand, within BACOVA_05424at 906.440 kb on + strand, within BACOVA_05424at 906.511 kb on + strand, within BACOVA_05424at 906.511 kb on + strand, within BACOVA_05424at 906.584 kb on + strand, within BACOVA_05424at 906.584 kb on + strand, within BACOVA_05424at 906.584 kb on + strand, within BACOVA_05424at 906.685 kb on + strand, within BACOVA_05424at 906.686 kb on - strand, within BACOVA_05424at 906.686 kb on - strand, within BACOVA_05424at 906.686 kb on - strand, within BACOVA_05424at 906.686 kb on - strand, within BACOVA_05424at 906.700 kb on + strand, within BACOVA_05424at 906.701 kb on - strand, within BACOVA_05424at 906.701 kb on - strand, within BACOVA_05424at 906.704 kb on + strand, within BACOVA_05424at 906.864 kb on + strand, within BACOVA_05424at 906.864 kb on + strand, within BACOVA_05424at 906.966 kb on - strand, within BACOVA_05424at 907.012 kb on - strand, within BACOVA_05424at 907.188 kb on + strand, within BACOVA_05424at 907.188 kb on + strand, within BACOVA_05424

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan 2.5 mg/mL (C)
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904,054 - BACOVA_05421 0.85 +0.6
904,066 + BACOVA_05421 0.85 -1.1
904,067 - BACOVA_05421 0.85 +1.3
904,081 + BACOVA_05421 0.86 +0.2
904,182 + BACOVA_05421 0.89 -0.3
904,186 + BACOVA_05421 0.89 +0.2
904,186 + BACOVA_05421 0.89 -1.0
904,186 + BACOVA_05421 0.89 +1.1
904,186 + BACOVA_05421 0.89 -1.0
904,205 + +0.3
904,248 - -0.9
904,287 + -1.8
904,287 + -0.0
904,288 - -0.8
904,301 + +0.8
904,302 - +0.0
904,314 + -0.4
904,314 + -1.1
904,370 + +0.9
904,370 + -1.1
904,390 - +1.3
904,415 + -0.4
904,468 + +0.3
904,538 + -0.9
904,539 - -0.5
904,539 - +0.9
904,540 + +1.5
904,559 + -0.9
904,630 - -0.7
904,633 + -1.5
904,634 - +0.9
904,634 - -0.6
904,643 + -0.5
904,643 + -0.6
904,649 + -1.1
904,652 + +0.4
904,666 + -0.5
904,666 + +0.2
904,670 + +0.3
904,670 + -1.1
904,815 + -0.8
904,826 - -1.0
904,826 - +0.0
904,826 - +0.3
905,009 + -0.3
905,018 - +1.2
905,019 + -0.6
905,020 - -1.3
905,048 - +0.4
905,109 + +1.2
905,110 - +0.6
905,121 + -0.8
905,121 + +0.0
905,142 + -1.3
905,142 + +0.9
905,190 - BACOVA_05423 0.14 +0.3
905,211 - BACOVA_05423 0.16 -0.2
905,269 + BACOVA_05423 0.21 +1.3
905,269 + BACOVA_05423 0.21 -0.7
905,312 + BACOVA_05423 0.24 -0.1
905,312 + BACOVA_05423 0.24 -0.8
905,313 - BACOVA_05423 0.25 +0.9
905,328 + BACOVA_05423 0.26 -0.6
905,486 + BACOVA_05423 0.39 -0.5
905,528 + BACOVA_05423 0.43 -0.0
905,554 - BACOVA_05423 0.45 -0.4
905,679 - BACOVA_05423 0.56 +0.1
905,679 - BACOVA_05423 0.56 -1.9
905,681 + BACOVA_05423 0.56 +0.5
905,681 + BACOVA_05423 0.56 -1.1
905,681 + BACOVA_05423 0.56 -1.5
905,681 + BACOVA_05423 0.56 +0.1
905,681 + BACOVA_05423 0.56 +0.3
905,682 - BACOVA_05423 0.56 -2.0
905,682 - BACOVA_05423 0.56 -0.4
905,683 + BACOVA_05423 0.56 +0.2
905,704 + BACOVA_05423 0.58 -2.4
905,705 - BACOVA_05423 0.58 -1.1
905,705 - BACOVA_05423 0.58 -0.4
905,708 + BACOVA_05423 0.58 -0.8
905,708 + BACOVA_05423 0.58 -0.8
905,784 + BACOVA_05423 0.65 +0.1
905,784 + BACOVA_05423 0.65 -0.3
905,784 + BACOVA_05423 0.65 +0.9
905,785 - BACOVA_05423 0.65 -0.4
905,835 + BACOVA_05423 0.69 +0.1
905,836 - BACOVA_05423 0.69 -0.2
905,836 - BACOVA_05423 0.69 -0.0
905,836 - BACOVA_05423 0.69 +0.3
905,836 - BACOVA_05423 0.69 +0.8
905,839 + BACOVA_05423 0.69 -0.9
905,840 - BACOVA_05423 0.69 -1.4
905,840 - BACOVA_05423 0.69 -2.9
905,840 - BACOVA_05423 0.69 +0.5
905,874 - BACOVA_05423 0.72 -0.3
905,875 + BACOVA_05423 0.72 +1.1
905,875 + BACOVA_05423 0.72 -1.8
905,939 - BACOVA_05423 0.78 +0.0
905,968 + BACOVA_05423 0.80 +0.1
905,968 + BACOVA_05423 0.80 -0.1
905,969 - BACOVA_05423 0.80 +1.9
906,018 - BACOVA_05423 0.85 +0.6
906,083 + -0.4
906,133 - -0.0
906,220 - -0.5
906,220 - -0.4
906,220 - -1.1
906,220 - -3.5
906,233 + +0.2
906,234 - +0.2
906,234 - +1.1
906,234 - +0.4
906,234 - -0.4
906,238 - +0.4
906,269 + +0.1
906,269 + -0.4
906,269 + -1.0
906,270 - +0.3
906,277 + +0.4
906,289 + +0.1
906,289 + -0.3
906,290 - +1.2
906,348 - -0.9
906,398 + BACOVA_05424 0.14 -0.4
906,440 + BACOVA_05424 0.17 -0.6
906,511 + BACOVA_05424 0.22 -1.1
906,511 + BACOVA_05424 0.22 +0.3
906,584 + BACOVA_05424 0.28 -1.0
906,584 + BACOVA_05424 0.28 -1.7
906,584 + BACOVA_05424 0.28 -0.9
906,685 + BACOVA_05424 0.36 -0.7
906,686 - BACOVA_05424 0.36 -0.1
906,686 - BACOVA_05424 0.36 -0.2
906,686 - BACOVA_05424 0.36 -1.3
906,686 - BACOVA_05424 0.36 +0.1
906,700 + BACOVA_05424 0.37 -0.5
906,701 - BACOVA_05424 0.37 -0.4
906,701 - BACOVA_05424 0.37 -0.4
906,704 + BACOVA_05424 0.38 +0.2
906,864 + BACOVA_05424 0.50 +0.1
906,864 + BACOVA_05424 0.50 +1.9
906,966 - BACOVA_05424 0.58 +0.3
907,012 - BACOVA_05424 0.62 -1.2
907,188 + BACOVA_05424 0.76 -0.1
907,188 + BACOVA_05424 0.76 -2.5

Or see this region's nucleotide sequence