Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03675

Experiment: Wheat Arabinoxylan 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03672 and BACOVA_03673 overlap by 14 nucleotidesBACOVA_03673 and BACOVA_03674 are separated by 25 nucleotidesBACOVA_03674 and BACOVA_03675 are separated by 2 nucleotidesBACOVA_03675 and BACOVA_03676 are separated by 14 nucleotides BACOVA_03672: BACOVA_03672 - hypothetical protein, at 566 to 829 _03672 BACOVA_03673: BACOVA_03673 - hypothetical protein, at 816 to 932 _03673 BACOVA_03674: BACOVA_03674 - hypothetical protein, at 958 to 1,740 _03674 BACOVA_03675: BACOVA_03675 - glycosyltransferase, group 2 family protein, at 1,743 to 2,717 _03675 BACOVA_03676: BACOVA_03676 - hypothetical protein, at 2,732 to 3,841 _03676 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.750 kb on - strand, within BACOVA_03672at 0.750 kb on - strand, within BACOVA_03672at 0.757 kb on + strand, within BACOVA_03672at 0.791 kb on + strand, within BACOVA_03672at 0.792 kb on - strand, within BACOVA_03672at 0.822 kb on + strandat 0.822 kb on + strandat 0.823 kb on - strandat 0.823 kb on - strandat 0.836 kb on - strand, within BACOVA_03673at 0.843 kb on - strand, within BACOVA_03673at 0.899 kb on + strand, within BACOVA_03673at 0.899 kb on + strand, within BACOVA_03673at 0.932 kb on + strandat 0.932 kb on + strandat 0.933 kb on - strandat 0.933 kb on - strandat 0.999 kb on + strandat 0.999 kb on + strandat 1.002 kb on + strandat 1.089 kb on + strand, within BACOVA_03674at 1.089 kb on + strand, within BACOVA_03674at 1.089 kb on + strand, within BACOVA_03674at 1.090 kb on - strand, within BACOVA_03674at 1.090 kb on - strand, within BACOVA_03674at 1.090 kb on - strand, within BACOVA_03674at 1.090 kb on - strand, within BACOVA_03674at 1.090 kb on - strand, within BACOVA_03674at 1.093 kb on - strand, within BACOVA_03674at 1.144 kb on - strand, within BACOVA_03674at 1.172 kb on - strand, within BACOVA_03674at 1.174 kb on - strand, within BACOVA_03674at 1.227 kb on + strand, within BACOVA_03674at 1.242 kb on + strand, within BACOVA_03674at 1.259 kb on + strand, within BACOVA_03674at 1.260 kb on - strand, within BACOVA_03674at 1.260 kb on - strand, within BACOVA_03674at 1.281 kb on + strand, within BACOVA_03674at 1.298 kb on + strand, within BACOVA_03674at 1.302 kb on + strand, within BACOVA_03674at 1.303 kb on - strand, within BACOVA_03674at 1.305 kb on - strand, within BACOVA_03674at 1.355 kb on + strand, within BACOVA_03674at 1.455 kb on + strand, within BACOVA_03674at 1.488 kb on - strand, within BACOVA_03674at 1.494 kb on - strand, within BACOVA_03674at 1.578 kb on - strand, within BACOVA_03674at 1.578 kb on - strand, within BACOVA_03674at 1.641 kb on + strand, within BACOVA_03674at 1.642 kb on - strand, within BACOVA_03674at 1.713 kb on + strandat 1.721 kb on + strandat 1.722 kb on - strandat 1.722 kb on - strandat 1.722 kb on - strandat 1.723 kb on + strandat 1.755 kb on + strandat 1.827 kb on + strandat 1.873 kb on - strand, within BACOVA_03675at 1.879 kb on + strand, within BACOVA_03675at 1.879 kb on + strand, within BACOVA_03675at 1.879 kb on + strand, within BACOVA_03675at 1.886 kb on + strand, within BACOVA_03675at 1.889 kb on - strand, within BACOVA_03675at 1.907 kb on + strand, within BACOVA_03675at 1.907 kb on + strand, within BACOVA_03675at 1.907 kb on + strand, within BACOVA_03675at 1.918 kb on - strand, within BACOVA_03675at 1.933 kb on + strand, within BACOVA_03675at 1.939 kb on - strand, within BACOVA_03675at 1.942 kb on + strand, within BACOVA_03675at 1.943 kb on - strand, within BACOVA_03675at 1.989 kb on - strand, within BACOVA_03675at 2.014 kb on - strand, within BACOVA_03675at 2.066 kb on - strand, within BACOVA_03675at 2.066 kb on - strand, within BACOVA_03675at 2.078 kb on + strand, within BACOVA_03675at 2.083 kb on - strand, within BACOVA_03675at 2.083 kb on - strand, within BACOVA_03675at 2.120 kb on + strand, within BACOVA_03675at 2.120 kb on + strand, within BACOVA_03675at 2.121 kb on - strand, within BACOVA_03675at 2.126 kb on - strand, within BACOVA_03675at 2.130 kb on - strand, within BACOVA_03675at 2.130 kb on - strand, within BACOVA_03675at 2.144 kb on + strand, within BACOVA_03675at 2.220 kb on + strand, within BACOVA_03675at 2.220 kb on + strand, within BACOVA_03675at 2.249 kb on + strand, within BACOVA_03675at 2.259 kb on - strand, within BACOVA_03675at 2.323 kb on - strand, within BACOVA_03675at 2.338 kb on - strand, within BACOVA_03675at 2.423 kb on + strand, within BACOVA_03675at 2.430 kb on - strand, within BACOVA_03675at 2.462 kb on - strand, within BACOVA_03675at 2.489 kb on + strand, within BACOVA_03675at 2.532 kb on - strand, within BACOVA_03675at 2.534 kb on - strand, within BACOVA_03675at 2.581 kb on - strand, within BACOVA_03675at 2.585 kb on + strand, within BACOVA_03675at 2.589 kb on - strand, within BACOVA_03675at 2.658 kb on - strandat 2.671 kb on + strandat 2.686 kb on + strandat 2.686 kb on + strandat 2.690 kb on + strandat 2.691 kb on - strandat 2.691 kb on - strandat 2.722 kb on + strandat 2.851 kb on - strand, within BACOVA_03676at 2.857 kb on + strand, within BACOVA_03676at 2.876 kb on + strand, within BACOVA_03676at 2.877 kb on - strand, within BACOVA_03676at 2.993 kb on + strand, within BACOVA_03676at 2.993 kb on + strand, within BACOVA_03676at 2.994 kb on - strand, within BACOVA_03676at 2.999 kb on - strand, within BACOVA_03676at 3.064 kb on + strand, within BACOVA_03676at 3.070 kb on + strand, within BACOVA_03676at 3.070 kb on + strand, within BACOVA_03676at 3.070 kb on + strand, within BACOVA_03676at 3.072 kb on + strand, within BACOVA_03676at 3.072 kb on + strand, within BACOVA_03676at 3.075 kb on + strand, within BACOVA_03676at 3.076 kb on - strand, within BACOVA_03676at 3.150 kb on + strand, within BACOVA_03676at 3.159 kb on + strand, within BACOVA_03676at 3.201 kb on + strand, within BACOVA_03676at 3.202 kb on - strand, within BACOVA_03676at 3.204 kb on - strand, within BACOVA_03676at 3.216 kb on + strand, within BACOVA_03676at 3.266 kb on - strand, within BACOVA_03676at 3.271 kb on + strand, within BACOVA_03676at 3.272 kb on - strand, within BACOVA_03676at 3.275 kb on + strand, within BACOVA_03676at 3.276 kb on - strand, within BACOVA_03676at 3.387 kb on - strand, within BACOVA_03676at 3.390 kb on + strand, within BACOVA_03676at 3.390 kb on + strand, within BACOVA_03676at 3.403 kb on + strand, within BACOVA_03676at 3.408 kb on - strand, within BACOVA_03676at 3.457 kb on + strand, within BACOVA_03676at 3.459 kb on + strand, within BACOVA_03676at 3.482 kb on - strand, within BACOVA_03676at 3.504 kb on + strand, within BACOVA_03676at 3.537 kb on + strand, within BACOVA_03676at 3.540 kb on + strand, within BACOVA_03676at 3.541 kb on - strand, within BACOVA_03676at 3.542 kb on + strand, within BACOVA_03676at 3.583 kb on + strand, within BACOVA_03676at 3.584 kb on - strand, within BACOVA_03676at 3.584 kb on - strand, within BACOVA_03676at 3.643 kb on + strand, within BACOVA_03676at 3.644 kb on - strand, within BACOVA_03676at 3.653 kb on + strand, within BACOVA_03676at 3.676 kb on + strand, within BACOVA_03676at 3.681 kb on + strand, within BACOVA_03676at 3.682 kb on - strand, within BACOVA_03676at 3.712 kb on - strand, within BACOVA_03676

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan 2.5 mg/mL (C)
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750 - BACOVA_03672 0.70 +0.4
750 - BACOVA_03672 0.70 -1.8
757 + BACOVA_03672 0.72 +1.8
791 + BACOVA_03672 0.85 +0.5
792 - BACOVA_03672 0.86 +1.0
822 + -0.3
822 + +0.7
823 - -1.0
823 - +0.1
836 - BACOVA_03673 0.17 +0.1
843 - BACOVA_03673 0.23 -0.4
899 + BACOVA_03673 0.71 -0.5
899 + BACOVA_03673 0.71 +0.3
932 + -0.5
932 + +1.4
933 - -1.4
933 - +0.1
999 + +0.7
999 + -0.3
1,002 + +0.9
1,089 + BACOVA_03674 0.17 +0.5
1,089 + BACOVA_03674 0.17 +0.4
1,089 + BACOVA_03674 0.17 +0.2
1,090 - BACOVA_03674 0.17 +1.8
1,090 - BACOVA_03674 0.17 +1.5
1,090 - BACOVA_03674 0.17 +2.0
1,090 - BACOVA_03674 0.17 +1.6
1,090 - BACOVA_03674 0.17 +1.1
1,093 - BACOVA_03674 0.17 -0.2
1,144 - BACOVA_03674 0.24 +2.4
1,172 - BACOVA_03674 0.27 +2.1
1,174 - BACOVA_03674 0.28 +1.2
1,227 + BACOVA_03674 0.34 +0.2
1,242 + BACOVA_03674 0.36 +0.0
1,259 + BACOVA_03674 0.38 -1.0
1,260 - BACOVA_03674 0.39 +1.4
1,260 - BACOVA_03674 0.39 +0.4
1,281 + BACOVA_03674 0.41 +0.5
1,298 + BACOVA_03674 0.43 +1.3
1,302 + BACOVA_03674 0.44 +0.5
1,303 - BACOVA_03674 0.44 +2.0
1,305 - BACOVA_03674 0.44 -0.2
1,355 + BACOVA_03674 0.51 -0.7
1,455 + BACOVA_03674 0.63 -0.2
1,488 - BACOVA_03674 0.68 +1.4
1,494 - BACOVA_03674 0.68 +2.4
1,578 - BACOVA_03674 0.79 +1.2
1,578 - BACOVA_03674 0.79 +1.8
1,641 + BACOVA_03674 0.87 -0.6
1,642 - BACOVA_03674 0.87 +2.1
1,713 + +0.6
1,721 + -0.5
1,722 - +1.1
1,722 - +0.4
1,722 - +1.2
1,723 + -0.3
1,755 + -0.7
1,827 + -0.7
1,873 - BACOVA_03675 0.13 +1.0
1,879 + BACOVA_03675 0.14 +1.3
1,879 + BACOVA_03675 0.14 +0.1
1,879 + BACOVA_03675 0.14 +0.3
1,886 + BACOVA_03675 0.15 +1.8
1,889 - BACOVA_03675 0.15 +0.8
1,907 + BACOVA_03675 0.17 +1.4
1,907 + BACOVA_03675 0.17 -0.2
1,907 + BACOVA_03675 0.17 +1.4
1,918 - BACOVA_03675 0.18 +1.1
1,933 + BACOVA_03675 0.19 +0.7
1,939 - BACOVA_03675 0.20 -1.2
1,942 + BACOVA_03675 0.20 -0.7
1,943 - BACOVA_03675 0.21 +0.9
1,989 - BACOVA_03675 0.25 +2.0
2,014 - BACOVA_03675 0.28 +0.6
2,066 - BACOVA_03675 0.33 +1.0
2,066 - BACOVA_03675 0.33 +1.8
2,078 + BACOVA_03675 0.34 +0.8
2,083 - BACOVA_03675 0.35 +1.8
2,083 - BACOVA_03675 0.35 +1.8
2,120 + BACOVA_03675 0.39 -1.0
2,120 + BACOVA_03675 0.39 -0.0
2,121 - BACOVA_03675 0.39 +1.7
2,126 - BACOVA_03675 0.39 +0.8
2,130 - BACOVA_03675 0.40 +1.4
2,130 - BACOVA_03675 0.40 +0.5
2,144 + BACOVA_03675 0.41 +0.5
2,220 + BACOVA_03675 0.49 +0.6
2,220 + BACOVA_03675 0.49 +0.5
2,249 + BACOVA_03675 0.52 -1.2
2,259 - BACOVA_03675 0.53 +0.8
2,323 - BACOVA_03675 0.59 +0.3
2,338 - BACOVA_03675 0.61 +2.1
2,423 + BACOVA_03675 0.70 -0.9
2,430 - BACOVA_03675 0.70 +0.2
2,462 - BACOVA_03675 0.74 -0.5
2,489 + BACOVA_03675 0.77 +1.1
2,532 - BACOVA_03675 0.81 +1.7
2,534 - BACOVA_03675 0.81 -0.7
2,581 - BACOVA_03675 0.86 +1.6
2,585 + BACOVA_03675 0.86 +1.6
2,589 - BACOVA_03675 0.87 +0.6
2,658 - +1.4
2,671 + +0.9
2,686 + -0.2
2,686 + +0.6
2,690 + +0.2
2,691 - +3.4
2,691 - -0.8
2,722 + -0.6
2,851 - BACOVA_03676 0.11 +0.3
2,857 + BACOVA_03676 0.11 +0.7
2,876 + BACOVA_03676 0.13 +1.3
2,877 - BACOVA_03676 0.13 +0.8
2,993 + BACOVA_03676 0.24 +0.0
2,993 + BACOVA_03676 0.24 +0.3
2,994 - BACOVA_03676 0.24 +0.5
2,999 - BACOVA_03676 0.24 -0.5
3,064 + BACOVA_03676 0.30 -0.0
3,070 + BACOVA_03676 0.30 +1.0
3,070 + BACOVA_03676 0.30 +1.7
3,070 + BACOVA_03676 0.30 -0.3
3,072 + BACOVA_03676 0.31 +0.4
3,072 + BACOVA_03676 0.31 -0.3
3,075 + BACOVA_03676 0.31 -0.4
3,076 - BACOVA_03676 0.31 -1.4
3,150 + BACOVA_03676 0.38 +0.7
3,159 + BACOVA_03676 0.38 +1.0
3,201 + BACOVA_03676 0.42 -0.3
3,202 - BACOVA_03676 0.42 -0.2
3,204 - BACOVA_03676 0.43 +0.4
3,216 + BACOVA_03676 0.44 +1.0
3,266 - BACOVA_03676 0.48 +0.3
3,271 + BACOVA_03676 0.49 +2.1
3,272 - BACOVA_03676 0.49 +1.0
3,275 + BACOVA_03676 0.49 +0.8
3,276 - BACOVA_03676 0.49 +0.7
3,387 - BACOVA_03676 0.59 +0.8
3,390 + BACOVA_03676 0.59 +0.4
3,390 + BACOVA_03676 0.59 -0.7
3,403 + BACOVA_03676 0.60 +0.4
3,408 - BACOVA_03676 0.61 +1.4
3,457 + BACOVA_03676 0.65 -1.0
3,459 + BACOVA_03676 0.65 +0.4
3,482 - BACOVA_03676 0.68 +0.1
3,504 + BACOVA_03676 0.70 +0.8
3,537 + BACOVA_03676 0.73 +1.1
3,540 + BACOVA_03676 0.73 +1.5
3,541 - BACOVA_03676 0.73 +0.8
3,542 + BACOVA_03676 0.73 -0.1
3,583 + BACOVA_03676 0.77 +1.3
3,584 - BACOVA_03676 0.77 -0.9
3,584 - BACOVA_03676 0.77 +0.0
3,643 + BACOVA_03676 0.82 -0.9
3,644 - BACOVA_03676 0.82 -0.3
3,653 + BACOVA_03676 0.83 -0.2
3,676 + BACOVA_03676 0.85 -0.3
3,681 + BACOVA_03676 0.85 -1.6
3,682 - BACOVA_03676 0.86 +0.6
3,712 - BACOVA_03676 0.88 +1.1

Or see this region's nucleotide sequence