Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03444

Experiment: Wheat Arabinoxylan 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03443 and BACOVA_03444 are separated by 13 nucleotidesBACOVA_03444 and BACOVA_03445 overlap by 17 nucleotides BACOVA_03443: BACOVA_03443 - TonB-linked outer membrane protein, SusC/RagA family, at 179,875 to 183,096 _03443 BACOVA_03444: BACOVA_03444 - SusD family protein, at 183,110 to 184,966 _03444 BACOVA_03445: BACOVA_03445 - IPT/TIG domain protein, at 184,950 to 186,332 _03445 Position (kb) 183 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.112 kb on + strand, within BACOVA_03443at 182.115 kb on - strand, within BACOVA_03443at 182.121 kb on + strand, within BACOVA_03443at 182.139 kb on + strand, within BACOVA_03443at 182.148 kb on + strand, within BACOVA_03443at 182.174 kb on + strand, within BACOVA_03443at 182.174 kb on + strand, within BACOVA_03443at 182.181 kb on + strand, within BACOVA_03443at 182.188 kb on - strand, within BACOVA_03443at 182.281 kb on + strand, within BACOVA_03443at 182.281 kb on + strand, within BACOVA_03443at 182.281 kb on + strand, within BACOVA_03443at 182.282 kb on - strand, within BACOVA_03443at 182.282 kb on - strand, within BACOVA_03443at 182.330 kb on + strand, within BACOVA_03443at 182.334 kb on + strand, within BACOVA_03443at 182.334 kb on + strand, within BACOVA_03443at 182.334 kb on + strand, within BACOVA_03443at 182.334 kb on + strand, within BACOVA_03443at 182.334 kb on + strand, within BACOVA_03443at 182.335 kb on - strand, within BACOVA_03443at 182.335 kb on - strand, within BACOVA_03443at 182.368 kb on - strand, within BACOVA_03443at 182.368 kb on - strand, within BACOVA_03443at 182.375 kb on + strand, within BACOVA_03443at 182.401 kb on - strand, within BACOVA_03443at 182.428 kb on - strand, within BACOVA_03443at 182.428 kb on - strand, within BACOVA_03443at 182.536 kb on + strand, within BACOVA_03443at 182.536 kb on + strand, within BACOVA_03443at 182.537 kb on - strand, within BACOVA_03443at 182.548 kb on - strand, within BACOVA_03443at 182.550 kb on + strand, within BACOVA_03443at 182.551 kb on - strand, within BACOVA_03443at 182.556 kb on + strand, within BACOVA_03443at 182.581 kb on - strand, within BACOVA_03443at 182.581 kb on - strand, within BACOVA_03443at 182.581 kb on - strand, within BACOVA_03443at 182.582 kb on + strand, within BACOVA_03443at 182.588 kb on + strand, within BACOVA_03443at 182.588 kb on + strand, within BACOVA_03443at 182.589 kb on - strand, within BACOVA_03443at 182.590 kb on + strand, within BACOVA_03443at 182.591 kb on - strand, within BACOVA_03443at 182.634 kb on + strand, within BACOVA_03443at 182.664 kb on - strand, within BACOVA_03443at 182.722 kb on - strand, within BACOVA_03443at 182.722 kb on - strand, within BACOVA_03443at 182.737 kb on - strand, within BACOVA_03443at 182.740 kb on + strand, within BACOVA_03443at 182.741 kb on - strand, within BACOVA_03443at 182.742 kb on + strand, within BACOVA_03443at 182.743 kb on - strand, within BACOVA_03443at 182.745 kb on - strand, within BACOVA_03443at 182.782 kb on - strandat 182.846 kb on + strandat 182.868 kb on + strandat 182.868 kb on + strandat 182.869 kb on - strandat 182.904 kb on - strandat 182.920 kb on + strandat 182.931 kb on + strandat 182.943 kb on + strandat 182.956 kb on + strandat 182.957 kb on - strandat 183.019 kb on - strandat 183.028 kb on + strandat 183.028 kb on + strandat 183.029 kb on - strandat 183.064 kb on - strandat 183.068 kb on - strandat 183.070 kb on - strandat 183.079 kb on - strandat 183.094 kb on + strandat 183.099 kb on - strandat 183.121 kb on + strandat 183.125 kb on - strandat 183.126 kb on + strandat 183.129 kb on + strandat 183.130 kb on - strandat 183.193 kb on - strandat 183.193 kb on - strandat 183.229 kb on + strandat 183.232 kb on + strandat 183.236 kb on + strandat 183.237 kb on - strandat 183.264 kb on - strandat 183.269 kb on + strandat 183.269 kb on + strandat 183.270 kb on - strandat 183.270 kb on - strandat 183.272 kb on - strandat 183.337 kb on + strand, within BACOVA_03444at 183.337 kb on + strand, within BACOVA_03444at 183.338 kb on - strand, within BACOVA_03444at 183.338 kb on - strand, within BACOVA_03444at 183.341 kb on + strand, within BACOVA_03444at 183.341 kb on + strand, within BACOVA_03444at 183.341 kb on + strand, within BACOVA_03444at 183.342 kb on - strand, within BACOVA_03444at 183.342 kb on - strand, within BACOVA_03444at 183.438 kb on - strand, within BACOVA_03444at 183.461 kb on + strand, within BACOVA_03444at 183.462 kb on - strand, within BACOVA_03444at 183.561 kb on - strand, within BACOVA_03444at 183.564 kb on - strand, within BACOVA_03444at 183.567 kb on - strand, within BACOVA_03444at 183.567 kb on - strand, within BACOVA_03444at 183.578 kb on + strand, within BACOVA_03444at 183.579 kb on - strand, within BACOVA_03444at 183.619 kb on + strand, within BACOVA_03444at 183.770 kb on + strand, within BACOVA_03444at 183.808 kb on + strand, within BACOVA_03444at 183.809 kb on - strand, within BACOVA_03444at 183.809 kb on - strand, within BACOVA_03444at 183.809 kb on - strand, within BACOVA_03444at 183.821 kb on - strand, within BACOVA_03444at 183.831 kb on - strand, within BACOVA_03444at 183.921 kb on - strand, within BACOVA_03444at 183.982 kb on - strand, within BACOVA_03444at 184.030 kb on + strand, within BACOVA_03444at 184.088 kb on + strand, within BACOVA_03444at 184.088 kb on + strand, within BACOVA_03444at 184.089 kb on - strand, within BACOVA_03444at 184.091 kb on - strand, within BACOVA_03444at 184.091 kb on - strand, within BACOVA_03444at 184.091 kb on - strand, within BACOVA_03444at 184.101 kb on - strand, within BACOVA_03444at 184.101 kb on - strand, within BACOVA_03444at 184.101 kb on - strand, within BACOVA_03444at 184.101 kb on - strand, within BACOVA_03444at 184.104 kb on + strand, within BACOVA_03444at 184.104 kb on + strand, within BACOVA_03444at 184.105 kb on - strand, within BACOVA_03444at 184.109 kb on + strand, within BACOVA_03444at 184.109 kb on + strand, within BACOVA_03444at 184.110 kb on - strand, within BACOVA_03444at 184.110 kb on - strand, within BACOVA_03444at 184.123 kb on + strand, within BACOVA_03444at 184.132 kb on + strand, within BACOVA_03444at 184.162 kb on + strand, within BACOVA_03444at 184.188 kb on - strand, within BACOVA_03444at 184.193 kb on + strand, within BACOVA_03444at 184.238 kb on - strand, within BACOVA_03444at 184.299 kb on + strand, within BACOVA_03444at 184.324 kb on + strand, within BACOVA_03444at 184.394 kb on + strand, within BACOVA_03444at 184.395 kb on - strand, within BACOVA_03444at 184.395 kb on - strand, within BACOVA_03444at 184.395 kb on - strand, within BACOVA_03444at 184.512 kb on - strand, within BACOVA_03444at 184.514 kb on + strand, within BACOVA_03444at 184.514 kb on + strand, within BACOVA_03444at 184.563 kb on + strand, within BACOVA_03444at 184.564 kb on - strand, within BACOVA_03444at 184.595 kb on - strand, within BACOVA_03444at 184.595 kb on - strand, within BACOVA_03444at 184.642 kb on + strand, within BACOVA_03444at 184.664 kb on - strand, within BACOVA_03444at 184.724 kb on + strand, within BACOVA_03444at 184.724 kb on + strand, within BACOVA_03444at 184.724 kb on + strand, within BACOVA_03444at 184.730 kb on + strand, within BACOVA_03444at 184.730 kb on + strand, within BACOVA_03444at 184.730 kb on + strand, within BACOVA_03444at 184.730 kb on + strand, within BACOVA_03444at 184.738 kb on + strand, within BACOVA_03444at 184.738 kb on + strand, within BACOVA_03444at 184.739 kb on - strand, within BACOVA_03444at 184.851 kb on - strandat 184.876 kb on + strandat 184.877 kb on - strandat 184.881 kb on + strandat 184.881 kb on + strandat 184.881 kb on + strandat 184.882 kb on - strandat 184.882 kb on - strandat 184.933 kb on + strandat 184.934 kb on - strandat 184.964 kb on + strandat 184.973 kb on + strandat 184.973 kb on + strandat 184.977 kb on - strandat 184.991 kb on + strandat 184.991 kb on + strandat 184.992 kb on - strandat 184.999 kb on + strandat 185.083 kb on + strandat 185.084 kb on - strandat 185.086 kb on - strandat 185.086 kb on - strandat 185.102 kb on + strand, within BACOVA_03445at 185.102 kb on + strand, within BACOVA_03445at 185.103 kb on - strand, within BACOVA_03445at 185.128 kb on + strand, within BACOVA_03445at 185.128 kb on + strand, within BACOVA_03445at 185.193 kb on - strand, within BACOVA_03445at 185.197 kb on - strand, within BACOVA_03445at 185.231 kb on + strand, within BACOVA_03445at 185.236 kb on - strand, within BACOVA_03445at 185.261 kb on + strand, within BACOVA_03445at 185.266 kb on + strand, within BACOVA_03445at 185.267 kb on - strand, within BACOVA_03445at 185.296 kb on + strand, within BACOVA_03445at 185.319 kb on - strand, within BACOVA_03445at 185.353 kb on + strand, within BACOVA_03445at 185.354 kb on - strand, within BACOVA_03445at 185.355 kb on + strand, within BACOVA_03445at 185.396 kb on + strand, within BACOVA_03445at 185.410 kb on - strand, within BACOVA_03445at 185.446 kb on + strand, within BACOVA_03445at 185.446 kb on + strand, within BACOVA_03445at 185.455 kb on - strand, within BACOVA_03445at 185.517 kb on + strand, within BACOVA_03445at 185.517 kb on + strand, within BACOVA_03445at 185.538 kb on - strand, within BACOVA_03445at 185.643 kb on + strand, within BACOVA_03445at 185.658 kb on + strand, within BACOVA_03445at 185.661 kb on - strand, within BACOVA_03445at 185.661 kb on - strand, within BACOVA_03445at 185.718 kb on + strand, within BACOVA_03445at 185.718 kb on + strand, within BACOVA_03445at 185.718 kb on + strand, within BACOVA_03445at 185.719 kb on - strand, within BACOVA_03445at 185.763 kb on + strand, within BACOVA_03445at 185.815 kb on - strand, within BACOVA_03445at 185.816 kb on + strand, within BACOVA_03445at 185.817 kb on - strand, within BACOVA_03445at 185.826 kb on - strand, within BACOVA_03445at 185.870 kb on + strand, within BACOVA_03445at 185.914 kb on + strand, within BACOVA_03445

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan 2.5 mg/mL (C)
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182,112 + BACOVA_03443 0.69 -0.4
182,115 - BACOVA_03443 0.70 +0.9
182,121 + BACOVA_03443 0.70 +0.6
182,139 + BACOVA_03443 0.70 -0.0
182,148 + BACOVA_03443 0.71 -1.6
182,174 + BACOVA_03443 0.71 -0.5
182,174 + BACOVA_03443 0.71 +1.1
182,181 + BACOVA_03443 0.72 +0.2
182,188 - BACOVA_03443 0.72 -0.0
182,281 + BACOVA_03443 0.75 -1.7
182,281 + BACOVA_03443 0.75 +0.6
182,281 + BACOVA_03443 0.75 +1.0
182,282 - BACOVA_03443 0.75 -0.1
182,282 - BACOVA_03443 0.75 +0.0
182,330 + BACOVA_03443 0.76 -1.1
182,334 + BACOVA_03443 0.76 -0.5
182,334 + BACOVA_03443 0.76 -0.4
182,334 + BACOVA_03443 0.76 +0.2
182,334 + BACOVA_03443 0.76 -0.5
182,334 + BACOVA_03443 0.76 +1.1
182,335 - BACOVA_03443 0.76 -1.1
182,335 - BACOVA_03443 0.76 +1.4
182,368 - BACOVA_03443 0.77 +0.3
182,368 - BACOVA_03443 0.77 +0.7
182,375 + BACOVA_03443 0.78 +1.1
182,401 - BACOVA_03443 0.78 +0.2
182,428 - BACOVA_03443 0.79 -1.7
182,428 - BACOVA_03443 0.79 -0.3
182,536 + BACOVA_03443 0.83 -0.3
182,536 + BACOVA_03443 0.83 -0.4
182,537 - BACOVA_03443 0.83 +1.4
182,548 - BACOVA_03443 0.83 +0.5
182,550 + BACOVA_03443 0.83 +0.4
182,551 - BACOVA_03443 0.83 +0.5
182,556 + BACOVA_03443 0.83 +1.2
182,581 - BACOVA_03443 0.84 -1.3
182,581 - BACOVA_03443 0.84 +1.7
182,581 - BACOVA_03443 0.84 +0.5
182,582 + BACOVA_03443 0.84 -0.5
182,588 + BACOVA_03443 0.84 -0.4
182,588 + BACOVA_03443 0.84 -0.1
182,589 - BACOVA_03443 0.84 +0.5
182,590 + BACOVA_03443 0.84 +1.0
182,591 - BACOVA_03443 0.84 +0.0
182,634 + BACOVA_03443 0.86 -1.3
182,664 - BACOVA_03443 0.87 +0.3
182,722 - BACOVA_03443 0.88 -0.1
182,722 - BACOVA_03443 0.88 -0.4
182,737 - BACOVA_03443 0.89 -0.6
182,740 + BACOVA_03443 0.89 +1.3
182,741 - BACOVA_03443 0.89 -1.8
182,742 + BACOVA_03443 0.89 +0.2
182,743 - BACOVA_03443 0.89 +0.7
182,745 - BACOVA_03443 0.89 +0.1
182,782 - +0.1
182,846 + +1.0
182,868 + -0.4
182,868 + +0.8
182,869 - +0.0
182,904 - +0.4
182,920 + +1.1
182,931 + +0.1
182,943 + +1.9
182,956 + -0.2
182,957 - -0.7
183,019 - +0.1
183,028 + +0.0
183,028 + +1.1
183,029 - +0.3
183,064 - -0.1
183,068 - +0.4
183,070 - -2.3
183,079 - +0.9
183,094 + -1.7
183,099 - -0.6
183,121 + +0.5
183,125 - -0.3
183,126 + +0.7
183,129 + +0.1
183,130 - -1.4
183,193 - -0.5
183,193 - +0.3
183,229 + -0.2
183,232 + -0.2
183,236 + -0.4
183,237 - -0.4
183,264 - +0.0
183,269 + -0.6
183,269 + +0.2
183,270 - +0.5
183,270 - -0.6
183,272 - -1.0
183,337 + BACOVA_03444 0.12 +0.1
183,337 + BACOVA_03444 0.12 -1.0
183,338 - BACOVA_03444 0.12 +0.8
183,338 - BACOVA_03444 0.12 +0.4
183,341 + BACOVA_03444 0.12 -0.0
183,341 + BACOVA_03444 0.12 +0.3
183,341 + BACOVA_03444 0.12 -0.2
183,342 - BACOVA_03444 0.12 +1.5
183,342 - BACOVA_03444 0.12 -0.2
183,438 - BACOVA_03444 0.18 -0.4
183,461 + BACOVA_03444 0.19 +0.5
183,462 - BACOVA_03444 0.19 +1.0
183,561 - BACOVA_03444 0.24 +0.3
183,564 - BACOVA_03444 0.24 +1.1
183,567 - BACOVA_03444 0.25 +0.8
183,567 - BACOVA_03444 0.25 -0.7
183,578 + BACOVA_03444 0.25 +0.3
183,579 - BACOVA_03444 0.25 +0.0
183,619 + BACOVA_03444 0.27 -0.9
183,770 + BACOVA_03444 0.36 -1.3
183,808 + BACOVA_03444 0.38 +1.3
183,809 - BACOVA_03444 0.38 +0.7
183,809 - BACOVA_03444 0.38 -0.7
183,809 - BACOVA_03444 0.38 -0.2
183,821 - BACOVA_03444 0.38 +0.0
183,831 - BACOVA_03444 0.39 -1.0
183,921 - BACOVA_03444 0.44 -0.8
183,982 - BACOVA_03444 0.47 +0.2
184,030 + BACOVA_03444 0.50 -0.3
184,088 + BACOVA_03444 0.53 -0.9
184,088 + BACOVA_03444 0.53 -1.6
184,089 - BACOVA_03444 0.53 -1.9
184,091 - BACOVA_03444 0.53 +0.2
184,091 - BACOVA_03444 0.53 -0.1
184,091 - BACOVA_03444 0.53 +0.4
184,101 - BACOVA_03444 0.53 -1.7
184,101 - BACOVA_03444 0.53 +0.4
184,101 - BACOVA_03444 0.53 -0.5
184,101 - BACOVA_03444 0.53 -0.7
184,104 + BACOVA_03444 0.54 +0.1
184,104 + BACOVA_03444 0.54 -0.0
184,105 - BACOVA_03444 0.54 -0.2
184,109 + BACOVA_03444 0.54 -0.3
184,109 + BACOVA_03444 0.54 -0.3
184,110 - BACOVA_03444 0.54 -0.7
184,110 - BACOVA_03444 0.54 +0.1
184,123 + BACOVA_03444 0.55 -1.4
184,132 + BACOVA_03444 0.55 +0.0
184,162 + BACOVA_03444 0.57 +0.5
184,188 - BACOVA_03444 0.58 +0.9
184,193 + BACOVA_03444 0.58 -1.2
184,238 - BACOVA_03444 0.61 -1.2
184,299 + BACOVA_03444 0.64 -0.9
184,324 + BACOVA_03444 0.65 +0.9
184,394 + BACOVA_03444 0.69 +0.1
184,395 - BACOVA_03444 0.69 -0.5
184,395 - BACOVA_03444 0.69 +0.7
184,395 - BACOVA_03444 0.69 -0.6
184,512 - BACOVA_03444 0.75 -0.4
184,514 + BACOVA_03444 0.76 -0.6
184,514 + BACOVA_03444 0.76 +0.9
184,563 + BACOVA_03444 0.78 +1.8
184,564 - BACOVA_03444 0.78 -0.4
184,595 - BACOVA_03444 0.80 +0.3
184,595 - BACOVA_03444 0.80 -1.2
184,642 + BACOVA_03444 0.82 +1.0
184,664 - BACOVA_03444 0.84 +1.7
184,724 + BACOVA_03444 0.87 +1.1
184,724 + BACOVA_03444 0.87 +0.7
184,724 + BACOVA_03444 0.87 -0.6
184,730 + BACOVA_03444 0.87 -0.5
184,730 + BACOVA_03444 0.87 -0.1
184,730 + BACOVA_03444 0.87 -0.2
184,730 + BACOVA_03444 0.87 +0.9
184,738 + BACOVA_03444 0.88 -0.9
184,738 + BACOVA_03444 0.88 +2.1
184,739 - BACOVA_03444 0.88 +0.0
184,851 - -0.9
184,876 + +0.9
184,877 - -0.2
184,881 + +1.5
184,881 + +0.3
184,881 + -0.8
184,882 - -1.0
184,882 - -1.2
184,933 + -2.8
184,934 - -0.2
184,964 + -0.1
184,973 + -1.9
184,973 + -1.2
184,977 - +0.5
184,991 + +0.3
184,991 + +0.2
184,992 - -1.5
184,999 + -0.5
185,083 + -0.3
185,084 - +0.4
185,086 - +0.5
185,086 - -1.3
185,102 + BACOVA_03445 0.11 -0.6
185,102 + BACOVA_03445 0.11 +0.4
185,103 - BACOVA_03445 0.11 +0.7
185,128 + BACOVA_03445 0.13 +0.1
185,128 + BACOVA_03445 0.13 -0.0
185,193 - BACOVA_03445 0.18 -0.7
185,197 - BACOVA_03445 0.18 -1.1
185,231 + BACOVA_03445 0.20 +0.1
185,236 - BACOVA_03445 0.21 -0.5
185,261 + BACOVA_03445 0.22 +0.7
185,266 + BACOVA_03445 0.23 -0.1
185,267 - BACOVA_03445 0.23 +1.3
185,296 + BACOVA_03445 0.25 +0.9
185,319 - BACOVA_03445 0.27 -0.3
185,353 + BACOVA_03445 0.29 +0.0
185,354 - BACOVA_03445 0.29 +0.7
185,355 + BACOVA_03445 0.29 +0.6
185,396 + BACOVA_03445 0.32 +0.1
185,410 - BACOVA_03445 0.33 +0.8
185,446 + BACOVA_03445 0.36 +1.0
185,446 + BACOVA_03445 0.36 -0.7
185,455 - BACOVA_03445 0.37 +0.6
185,517 + BACOVA_03445 0.41 +0.2
185,517 + BACOVA_03445 0.41 +0.1
185,538 - BACOVA_03445 0.43 +1.3
185,643 + BACOVA_03445 0.50 +0.4
185,658 + BACOVA_03445 0.51 -0.4
185,661 - BACOVA_03445 0.51 +0.1
185,661 - BACOVA_03445 0.51 +0.7
185,718 + BACOVA_03445 0.56 +0.8
185,718 + BACOVA_03445 0.56 +1.1
185,718 + BACOVA_03445 0.56 -1.3
185,719 - BACOVA_03445 0.56 -0.5
185,763 + BACOVA_03445 0.59 -0.9
185,815 - BACOVA_03445 0.63 -0.5
185,816 + BACOVA_03445 0.63 -0.2
185,817 - BACOVA_03445 0.63 +0.0
185,826 - BACOVA_03445 0.63 -0.3
185,870 + BACOVA_03445 0.67 +0.2
185,914 + BACOVA_03445 0.70 +0.5

Or see this region's nucleotide sequence