Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02622

Experiment: Wheat Arabinoxylan 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02622 and BACOVA_02623 are separated by 127 nucleotides BACOVA_02622: BACOVA_02622 - transporter, small conductance mechanosensitive ion channel MscS family protein, at 372 to 2,222 _02622 BACOVA_02623: BACOVA_02623 - K+-dependent Na+/Ca+ exchanger family protein, at 2,350 to 3,339 _02623 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 0.114 kb on + strandat 0.115 kb on - strandat 0.203 kb on - strandat 0.225 kb on - strandat 0.251 kb on + strandat 0.252 kb on - strandat 0.253 kb on + strandat 0.287 kb on + strandat 0.287 kb on + strandat 0.289 kb on + strandat 0.290 kb on - strandat 0.318 kb on + strandat 0.319 kb on - strandat 0.402 kb on - strandat 0.402 kb on - strandat 0.405 kb on - strandat 0.413 kb on + strandat 0.413 kb on + strandat 0.470 kb on + strandat 0.473 kb on - strandat 0.542 kb on - strandat 0.557 kb on + strand, within BACOVA_02622at 0.557 kb on + strand, within BACOVA_02622at 0.558 kb on - strand, within BACOVA_02622at 0.572 kb on + strand, within BACOVA_02622at 0.574 kb on + strand, within BACOVA_02622at 0.574 kb on + strand, within BACOVA_02622at 0.575 kb on - strand, within BACOVA_02622at 0.575 kb on - strand, within BACOVA_02622at 0.582 kb on - strand, within BACOVA_02622at 0.712 kb on + strand, within BACOVA_02622at 0.712 kb on + strand, within BACOVA_02622at 0.720 kb on - strand, within BACOVA_02622at 0.723 kb on + strand, within BACOVA_02622at 0.724 kb on - strand, within BACOVA_02622at 0.738 kb on - strand, within BACOVA_02622at 0.738 kb on - strand, within BACOVA_02622at 0.769 kb on + strand, within BACOVA_02622at 0.770 kb on - strand, within BACOVA_02622at 0.775 kb on - strand, within BACOVA_02622at 0.779 kb on + strand, within BACOVA_02622at 0.794 kb on + strand, within BACOVA_02622at 0.870 kb on - strand, within BACOVA_02622at 0.882 kb on - strand, within BACOVA_02622at 0.882 kb on - strand, within BACOVA_02622at 0.925 kb on + strand, within BACOVA_02622at 0.925 kb on + strand, within BACOVA_02622at 0.926 kb on - strand, within BACOVA_02622at 0.926 kb on - strand, within BACOVA_02622at 0.926 kb on - strand, within BACOVA_02622at 0.926 kb on - strand, within BACOVA_02622at 0.930 kb on - strand, within BACOVA_02622at 0.950 kb on + strand, within BACOVA_02622at 0.951 kb on - strand, within BACOVA_02622at 0.966 kb on - strand, within BACOVA_02622at 0.966 kb on - strand, within BACOVA_02622at 0.999 kb on + strand, within BACOVA_02622at 1.007 kb on + strand, within BACOVA_02622at 1.007 kb on + strand, within BACOVA_02622at 1.072 kb on + strand, within BACOVA_02622at 1.072 kb on + strand, within BACOVA_02622at 1.202 kb on - strand, within BACOVA_02622at 1.209 kb on - strand, within BACOVA_02622at 1.209 kb on - strand, within BACOVA_02622at 1.229 kb on + strand, within BACOVA_02622at 1.235 kb on + strand, within BACOVA_02622at 1.235 kb on + strand, within BACOVA_02622at 1.238 kb on - strand, within BACOVA_02622at 1.248 kb on - strand, within BACOVA_02622at 1.278 kb on + strand, within BACOVA_02622at 1.278 kb on + strand, within BACOVA_02622at 1.279 kb on - strand, within BACOVA_02622at 1.279 kb on - strand, within BACOVA_02622at 1.280 kb on + strand, within BACOVA_02622at 1.282 kb on + strand, within BACOVA_02622at 1.297 kb on + strand, within BACOVA_02622at 1.353 kb on + strand, within BACOVA_02622at 1.353 kb on + strand, within BACOVA_02622at 1.369 kb on + strand, within BACOVA_02622at 1.371 kb on + strand, within BACOVA_02622at 1.371 kb on + strand, within BACOVA_02622at 1.373 kb on + strand, within BACOVA_02622at 1.375 kb on + strand, within BACOVA_02622at 1.398 kb on + strand, within BACOVA_02622at 1.398 kb on + strand, within BACOVA_02622at 1.399 kb on - strand, within BACOVA_02622at 1.399 kb on - strand, within BACOVA_02622at 1.438 kb on + strand, within BACOVA_02622at 1.449 kb on - strand, within BACOVA_02622at 1.545 kb on + strand, within BACOVA_02622at 1.564 kb on + strand, within BACOVA_02622at 1.710 kb on + strand, within BACOVA_02622at 1.711 kb on - strand, within BACOVA_02622at 1.724 kb on - strand, within BACOVA_02622at 1.757 kb on + strand, within BACOVA_02622at 1.757 kb on + strand, within BACOVA_02622at 1.757 kb on + strand, within BACOVA_02622at 1.782 kb on - strand, within BACOVA_02622at 1.841 kb on + strand, within BACOVA_02622at 1.872 kb on + strand, within BACOVA_02622at 1.872 kb on + strand, within BACOVA_02622at 1.872 kb on + strand, within BACOVA_02622at 2.010 kb on - strand, within BACOVA_02622at 2.111 kb on + strandat 2.111 kb on + strandat 2.111 kb on + strandat 2.112 kb on - strandat 2.112 kb on - strandat 2.211 kb on - strandat 2.222 kb on + strandat 2.227 kb on + strandat 2.228 kb on - strandat 2.228 kb on - strandat 2.228 kb on - strandat 2.229 kb on + strandat 2.229 kb on + strandat 2.243 kb on - strandat 2.350 kb on - strandat 2.357 kb on + strandat 2.357 kb on + strandat 2.357 kb on + strandat 2.358 kb on - strandat 2.367 kb on + strandat 2.379 kb on - strandat 2.408 kb on + strandat 2.469 kb on + strand, within BACOVA_02623at 2.470 kb on - strand, within BACOVA_02623at 2.516 kb on + strand, within BACOVA_02623at 2.584 kb on - strand, within BACOVA_02623at 2.646 kb on + strand, within BACOVA_02623at 2.647 kb on - strand, within BACOVA_02623at 2.657 kb on + strand, within BACOVA_02623at 2.669 kb on + strand, within BACOVA_02623at 2.669 kb on + strand, within BACOVA_02623at 2.670 kb on - strand, within BACOVA_02623at 2.708 kb on + strand, within BACOVA_02623at 2.708 kb on + strand, within BACOVA_02623at 2.714 kb on + strand, within BACOVA_02623at 2.718 kb on + strand, within BACOVA_02623at 2.748 kb on - strand, within BACOVA_02623at 2.748 kb on - strand, within BACOVA_02623at 2.748 kb on - strand, within BACOVA_02623at 2.843 kb on + strand, within BACOVA_02623at 2.844 kb on - strand, within BACOVA_02623at 2.910 kb on + strand, within BACOVA_02623at 3.033 kb on + strand, within BACOVA_02623at 3.054 kb on + strand, within BACOVA_02623at 3.114 kb on + strand, within BACOVA_02623at 3.115 kb on - strand, within BACOVA_02623at 3.129 kb on + strand, within BACOVA_02623at 3.129 kb on + strand, within BACOVA_02623at 3.130 kb on - strand, within BACOVA_02623at 3.130 kb on - strand, within BACOVA_02623at 3.130 kb on - strand, within BACOVA_02623at 3.132 kb on - strand, within BACOVA_02623at 3.132 kb on - strand, within BACOVA_02623at 3.132 kb on - strand, within BACOVA_02623at 3.213 kb on - strand, within BACOVA_02623at 3.213 kb on - strand, within BACOVA_02623

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan 2.5 mg/mL (C)
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114 + -0.4
115 - -0.0
203 - -0.7
225 - +0.1
251 + -1.4
252 - +0.0
253 + +1.3
287 + +0.2
287 + -0.9
289 + -0.1
290 - -0.1
318 + +0.4
319 - +0.8
402 - +0.6
402 - -1.3
405 - -1.0
413 + -2.4
413 + -0.3
470 + -0.7
473 - -0.3
542 - +0.0
557 + BACOVA_02622 0.10 +0.1
557 + BACOVA_02622 0.10 +0.5
558 - BACOVA_02622 0.10 -1.4
572 + BACOVA_02622 0.11 -0.7
574 + BACOVA_02622 0.11 -1.8
574 + BACOVA_02622 0.11 +0.4
575 - BACOVA_02622 0.11 +0.4
575 - BACOVA_02622 0.11 -1.0
582 - BACOVA_02622 0.11 -1.9
712 + BACOVA_02622 0.18 -0.1
712 + BACOVA_02622 0.18 -2.9
720 - BACOVA_02622 0.19 -2.3
723 + BACOVA_02622 0.19 -2.3
724 - BACOVA_02622 0.19 -0.1
738 - BACOVA_02622 0.20 -0.2
738 - BACOVA_02622 0.20 +0.2
769 + BACOVA_02622 0.21 +0.2
770 - BACOVA_02622 0.22 +0.1
775 - BACOVA_02622 0.22 +0.2
779 + BACOVA_02622 0.22 +0.8
794 + BACOVA_02622 0.23 -1.1
870 - BACOVA_02622 0.27 +1.9
882 - BACOVA_02622 0.28 -0.4
882 - BACOVA_02622 0.28 -0.7
925 + BACOVA_02622 0.30 -0.3
925 + BACOVA_02622 0.30 -0.2
926 - BACOVA_02622 0.30 -1.0
926 - BACOVA_02622 0.30 -1.3
926 - BACOVA_02622 0.30 -1.7
926 - BACOVA_02622 0.30 -1.0
930 - BACOVA_02622 0.30 -0.0
950 + BACOVA_02622 0.31 -0.9
951 - BACOVA_02622 0.31 -0.4
966 - BACOVA_02622 0.32 +1.1
966 - BACOVA_02622 0.32 -1.0
999 + BACOVA_02622 0.34 +1.6
1,007 + BACOVA_02622 0.34 -1.8
1,007 + BACOVA_02622 0.34 +0.7
1,072 + BACOVA_02622 0.38 +0.1
1,072 + BACOVA_02622 0.38 +0.3
1,202 - BACOVA_02622 0.45 -0.6
1,209 - BACOVA_02622 0.45 -2.4
1,209 - BACOVA_02622 0.45 -1.4
1,229 + BACOVA_02622 0.46 -1.6
1,235 + BACOVA_02622 0.47 -0.3
1,235 + BACOVA_02622 0.47 -1.5
1,238 - BACOVA_02622 0.47 -0.0
1,248 - BACOVA_02622 0.47 -0.6
1,278 + BACOVA_02622 0.49 -1.0
1,278 + BACOVA_02622 0.49 +0.4
1,279 - BACOVA_02622 0.49 -1.0
1,279 - BACOVA_02622 0.49 -0.3
1,280 + BACOVA_02622 0.49 +0.8
1,282 + BACOVA_02622 0.49 -0.8
1,297 + BACOVA_02622 0.50 -0.4
1,353 + BACOVA_02622 0.53 +0.7
1,353 + BACOVA_02622 0.53 +0.6
1,369 + BACOVA_02622 0.54 -0.4
1,371 + BACOVA_02622 0.54 +0.3
1,371 + BACOVA_02622 0.54 -1.8
1,373 + BACOVA_02622 0.54 -0.4
1,375 + BACOVA_02622 0.54 -1.3
1,398 + BACOVA_02622 0.55 -0.8
1,398 + BACOVA_02622 0.55 -0.1
1,399 - BACOVA_02622 0.55 -0.6
1,399 - BACOVA_02622 0.55 +0.3
1,438 + BACOVA_02622 0.58 +0.3
1,449 - BACOVA_02622 0.58 +0.3
1,545 + BACOVA_02622 0.63 +0.3
1,564 + BACOVA_02622 0.64 +1.1
1,710 + BACOVA_02622 0.72 -0.4
1,711 - BACOVA_02622 0.72 +0.6
1,724 - BACOVA_02622 0.73 -0.8
1,757 + BACOVA_02622 0.75 -0.6
1,757 + BACOVA_02622 0.75 +0.6
1,757 + BACOVA_02622 0.75 -1.9
1,782 - BACOVA_02622 0.76 -0.4
1,841 + BACOVA_02622 0.79 +1.1
1,872 + BACOVA_02622 0.81 -1.0
1,872 + BACOVA_02622 0.81 -1.1
1,872 + BACOVA_02622 0.81 +1.8
2,010 - BACOVA_02622 0.88 -1.4
2,111 + -0.6
2,111 + +0.2
2,111 + -0.4
2,112 - -0.1
2,112 - -1.3
2,211 - -0.8
2,222 + -0.3
2,227 + -0.5
2,228 - -0.1
2,228 - -0.1
2,228 - -0.1
2,229 + +0.6
2,229 + +0.1
2,243 - +0.1
2,350 - -0.9
2,357 + -1.0
2,357 + -2.0
2,357 + +0.1
2,358 - -0.3
2,367 + +0.8
2,379 - +0.6
2,408 + +0.2
2,469 + BACOVA_02623 0.12 +0.7
2,470 - BACOVA_02623 0.12 -2.0
2,516 + BACOVA_02623 0.17 +0.7
2,584 - BACOVA_02623 0.24 -0.5
2,646 + BACOVA_02623 0.30 +0.1
2,647 - BACOVA_02623 0.30 +0.7
2,657 + BACOVA_02623 0.31 -1.0
2,669 + BACOVA_02623 0.32 -0.8
2,669 + BACOVA_02623 0.32 +1.0
2,670 - BACOVA_02623 0.32 -0.3
2,708 + BACOVA_02623 0.36 +0.3
2,708 + BACOVA_02623 0.36 +0.6
2,714 + BACOVA_02623 0.37 +0.7
2,718 + BACOVA_02623 0.37 -0.1
2,748 - BACOVA_02623 0.40 -0.5
2,748 - BACOVA_02623 0.40 +0.4
2,748 - BACOVA_02623 0.40 -0.6
2,843 + BACOVA_02623 0.50 -0.7
2,844 - BACOVA_02623 0.50 -1.2
2,910 + BACOVA_02623 0.57 -1.5
3,033 + BACOVA_02623 0.69 -0.4
3,054 + BACOVA_02623 0.71 -0.7
3,114 + BACOVA_02623 0.77 -1.7
3,115 - BACOVA_02623 0.77 -0.4
3,129 + BACOVA_02623 0.79 -0.8
3,129 + BACOVA_02623 0.79 +3.2
3,130 - BACOVA_02623 0.79 -0.1
3,130 - BACOVA_02623 0.79 +1.2
3,130 - BACOVA_02623 0.79 -0.3
3,132 - BACOVA_02623 0.79 +1.7
3,132 - BACOVA_02623 0.79 -0.5
3,132 - BACOVA_02623 0.79 +0.0
3,213 - BACOVA_02623 0.87 +0.1
3,213 - BACOVA_02623 0.87 +1.5

Or see this region's nucleotide sequence