Experiment: Wheat Arabinoxylan 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02232 and BACOVA_02233 are separated by 29 nucleotides BACOVA_02233 and BACOVA_02235 are separated by 154 nucleotides BACOVA_02235 and BACOVA_02234 overlap by 24 nucleotides BACOVA_02234 and BACOVA_02236 are separated by 7 nucleotides BACOVA_02236 and BACOVA_02237 are separated by 24 nucleotides
BACOVA_02232: BACOVA_02232 - hypothetical protein, at 14,632 to 14,772
_02232
BACOVA_02233: BACOVA_02233 - hypothetical protein, at 14,802 to 14,906
_02233
BACOVA_02235: BACOVA_02235 - hypothetical protein, at 15,061 to 15,168
_02235
BACOVA_02234: BACOVA_02234 - positive regulator of sigma(E), RseC/MucC, at 15,145 to 15,570
_02234
BACOVA_02236: BACOVA_02236 - electron transport complex, RnfABCDGE type, B subunit, at 15,578 to 16,531
_02236
BACOVA_02237: BACOVA_02237 - electron transport complex, RnfABCDGE type, C subunit, at 16,556 to 17,893
_02237
Position (kb) 15
16
17 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 14.671 kb on + strand, within BACOVA_02232 at 14.671 kb on + strand, within BACOVA_02232 at 14.673 kb on + strand, within BACOVA_02232 at 14.673 kb on + strand, within BACOVA_02232 at 14.677 kb on - strand, within BACOVA_02232 at 14.713 kb on + strand, within BACOVA_02232 at 14.714 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.718 kb on - strand, within BACOVA_02232 at 14.760 kb on - strand at 14.817 kb on + strand, within BACOVA_02233 at 14.872 kb on - strand, within BACOVA_02233 at 14.872 kb on - strand, within BACOVA_02233 at 14.883 kb on + strand, within BACOVA_02233 at 14.897 kb on - strand at 14.979 kb on + strand at 15.016 kb on - strand at 15.102 kb on + strand, within BACOVA_02235 at 15.157 kb on - strand at 15.160 kb on - strand at 15.162 kb on - strand at 15.162 kb on - strand at 15.188 kb on + strand, within BACOVA_02234 at 15.243 kb on + strand, within BACOVA_02234 at 15.291 kb on - strand, within BACOVA_02234 at 15.295 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.300 kb on - strand, within BACOVA_02234 at 15.320 kb on - strand, within BACOVA_02234 at 15.405 kb on - strand, within BACOVA_02234 at 15.487 kb on - strand, within BACOVA_02234 at 15.493 kb on + strand, within BACOVA_02234 at 15.507 kb on - strand, within BACOVA_02234 at 15.507 kb on - strand, within BACOVA_02234 at 15.561 kb on - strand at 15.569 kb on - strand at 15.569 kb on - strand at 15.578 kb on - strand at 15.617 kb on - strand at 15.617 kb on - strand at 15.617 kb on - strand at 15.644 kb on + strand at 15.644 kb on + strand at 15.880 kb on - strand, within BACOVA_02236 at 15.889 kb on - strand, within BACOVA_02236 at 15.907 kb on + strand, within BACOVA_02236 at 15.908 kb on - strand, within BACOVA_02236 at 15.922 kb on + strand, within BACOVA_02236 at 15.972 kb on - strand, within BACOVA_02236 at 15.991 kb on + strand, within BACOVA_02236 at 15.992 kb on - strand, within BACOVA_02236 at 15.995 kb on + strand, within BACOVA_02236 at 16.097 kb on - strand, within BACOVA_02236 at 16.179 kb on - strand, within BACOVA_02236 at 16.181 kb on - strand, within BACOVA_02236 at 16.196 kb on - strand, within BACOVA_02236 at 16.219 kb on + strand, within BACOVA_02236 at 16.219 kb on + strand, within BACOVA_02236 at 16.229 kb on - strand, within BACOVA_02236 at 16.241 kb on - strand, within BACOVA_02236 at 16.308 kb on - strand, within BACOVA_02236 at 16.445 kb on - strand at 16.445 kb on - strand at 16.496 kb on + strand at 16.530 kb on - strand at 16.530 kb on - strand at 16.530 kb on - strand at 16.545 kb on + strand at 16.555 kb on + strand at 16.600 kb on + strand at 16.723 kb on - strand, within BACOVA_02237 at 16.730 kb on - strand, within BACOVA_02237 at 16.807 kb on + strand, within BACOVA_02237 at 16.840 kb on + strand, within BACOVA_02237 at 16.987 kb on + strand, within BACOVA_02237 at 17.116 kb on - strand, within BACOVA_02237 at 17.177 kb on - strand, within BACOVA_02237 at 17.180 kb on - strand, within BACOVA_02237 at 17.207 kb on - strand, within BACOVA_02237 at 17.329 kb on + strand, within BACOVA_02237 at 17.330 kb on - strand, within BACOVA_02237 at 17.330 kb on - strand, within BACOVA_02237 at 17.525 kb on - strand, within BACOVA_02237
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan 2.5 mg/mL (C) remove 14,671 + BACOVA_02232 0.28 -0.8 14,671 + BACOVA_02232 0.28 +1.2 14,673 + BACOVA_02232 0.29 +0.2 14,673 + BACOVA_02232 0.29 -1.0 14,677 - BACOVA_02232 0.32 -0.2 14,713 + BACOVA_02232 0.57 -2.0 14,714 - BACOVA_02232 0.58 +0.1 14,718 - BACOVA_02232 0.61 +0.1 14,718 - BACOVA_02232 0.61 +1.2 14,718 - BACOVA_02232 0.61 -0.5 14,718 - BACOVA_02232 0.61 -0.2 14,760 - -1.0 14,817 + BACOVA_02233 0.14 -0.6 14,872 - BACOVA_02233 0.67 -1.8 14,872 - BACOVA_02233 0.67 -0.1 14,883 + BACOVA_02233 0.77 -0.5 14,897 - -1.0 14,979 + +0.2 15,016 - +0.1 15,102 + BACOVA_02235 0.38 -0.9 15,157 - -3.6 15,160 - -3.8 15,162 - -2.3 15,162 - -1.5 15,188 + BACOVA_02234 0.10 -2.1 15,243 + BACOVA_02234 0.23 -0.8 15,291 - BACOVA_02234 0.34 -2.1 15,295 - BACOVA_02234 0.35 -1.6 15,300 - BACOVA_02234 0.36 -2.2 15,300 - BACOVA_02234 0.36 -1.0 15,300 - BACOVA_02234 0.36 -0.2 15,320 - BACOVA_02234 0.41 -1.5 15,405 - BACOVA_02234 0.61 -1.5 15,487 - BACOVA_02234 0.80 -1.0 15,493 + BACOVA_02234 0.82 -0.2 15,507 - BACOVA_02234 0.85 -1.2 15,507 - BACOVA_02234 0.85 -1.0 15,561 - -1.0 15,569 - -3.6 15,569 - -1.0 15,578 - -0.5 15,617 - -1.8 15,617 - -1.0 15,617 - -3.5 15,644 + -0.2 15,644 + +0.0 15,880 - BACOVA_02236 0.32 -1.3 15,889 - BACOVA_02236 0.33 -1.5 15,907 + BACOVA_02236 0.34 -1.5 15,908 - BACOVA_02236 0.35 -1.6 15,922 + BACOVA_02236 0.36 -0.2 15,972 - BACOVA_02236 0.41 -2.1 15,991 + BACOVA_02236 0.43 -0.2 15,992 - BACOVA_02236 0.43 -3.0 15,995 + BACOVA_02236 0.44 -0.2 16,097 - BACOVA_02236 0.54 -1.8 16,179 - BACOVA_02236 0.63 -0.9 16,181 - BACOVA_02236 0.63 -2.0 16,196 - BACOVA_02236 0.65 -2.2 16,219 + BACOVA_02236 0.67 +0.2 16,219 + BACOVA_02236 0.67 -1.5 16,229 - BACOVA_02236 0.68 -1.3 16,241 - BACOVA_02236 0.69 -2.8 16,308 - BACOVA_02236 0.77 -1.9 16,445 - -0.8 16,445 - -1.2 16,496 + -0.6 16,530 - -1.9 16,530 - -2.6 16,530 - -1.0 16,545 + -1.4 16,555 + -1.6 16,600 + -1.8 16,723 - BACOVA_02237 0.12 -1.2 16,730 - BACOVA_02237 0.13 -1.6 16,807 + BACOVA_02237 0.19 -0.5 16,840 + BACOVA_02237 0.21 -1.7 16,987 + BACOVA_02237 0.32 -1.9 17,116 - BACOVA_02237 0.42 -1.6 17,177 - BACOVA_02237 0.46 -2.4 17,180 - BACOVA_02237 0.47 -1.4 17,207 - BACOVA_02237 0.49 -0.8 17,329 + BACOVA_02237 0.58 -1.6 17,330 - BACOVA_02237 0.58 -2.4 17,330 - BACOVA_02237 0.58 -2.0 17,525 - BACOVA_02237 0.72 -1.3
Or see this region's nucleotide sequence