Strain Fitness in Pseudomonas sp. DMC3 around GFF5171

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5170 and GFF5171 are separated by 110 nucleotidesGFF5171 and GFF5172 are separated by 403 nucleotidesGFF5172 and GFF5173 are separated by 97 nucleotides GFF5170 - L-serine dehydratase 2, at 50,819 to 52,195 GFF5170 GFF5171 - Aminomethyltransferase, at 52,306 to 53,430 GFF5171 GFF5172 - Major cold shock protein CspA, at 53,834 to 54,046 GFF5172 GFF5173 - hypothetical protein, at 54,144 to 54,632 GFF5173 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 51.373 kb on + strand, within GFF5170at 51.373 kb on + strand, within GFF5170at 51.373 kb on + strand, within GFF5170at 51.373 kb on + strand, within GFF5170at 51.377 kb on + strand, within GFF5170at 51.377 kb on + strand, within GFF5170at 51.377 kb on + strand, within GFF5170at 51.377 kb on + strand, within GFF5170at 51.377 kb on + strand, within GFF5170at 51.377 kb on + strand, within GFF5170at 51.378 kb on - strand, within GFF5170at 51.378 kb on - strand, within GFF5170at 51.378 kb on - strand, within GFF5170at 51.378 kb on - strand, within GFF5170at 51.629 kb on + strand, within GFF5170at 51.630 kb on - strand, within GFF5170at 51.630 kb on - strand, within GFF5170at 51.725 kb on + strand, within GFF5170at 51.725 kb on + strand, within GFF5170at 51.725 kb on + strand, within GFF5170at 51.726 kb on - strand, within GFF5170at 51.726 kb on - strand, within GFF5170at 51.728 kb on + strand, within GFF5170at 51.728 kb on + strand, within GFF5170at 51.728 kb on + strand, within GFF5170at 51.728 kb on + strand, within GFF5170at 51.728 kb on + strand, within GFF5170at 51.728 kb on + strand, within GFF5170at 51.728 kb on + strand, within GFF5170at 51.728 kb on + strand, within GFF5170at 51.729 kb on - strand, within GFF5170at 51.729 kb on - strand, within GFF5170at 51.729 kb on - strand, within GFF5170at 51.729 kb on - strand, within GFF5170at 51.729 kb on - strand, within GFF5170at 51.729 kb on - strand, within GFF5170at 51.729 kb on - strand, within GFF5170at 51.729 kb on - strand, within GFF5170at 51.729 kb on - strand, within GFF5170at 51.806 kb on + strand, within GFF5170at 51.806 kb on + strand, within GFF5170at 52.145 kb on + strandat 52.146 kb on - strandat 52.146 kb on - strandat 52.215 kb on + strandat 52.215 kb on + strandat 52.215 kb on + strandat 52.216 kb on - strandat 52.216 kb on - strandat 52.216 kb on - strandat 52.216 kb on - strandat 52.216 kb on - strandat 52.220 kb on - strandat 52.387 kb on + strandat 52.387 kb on + strandat 52.571 kb on - strand, within GFF5171at 52.723 kb on - strand, within GFF5171at 52.934 kb on + strand, within GFF5171at 53.023 kb on + strand, within GFF5171at 53.023 kb on + strand, within GFF5171at 53.024 kb on - strand, within GFF5171at 53.312 kb on - strand, within GFF5171at 53.326 kb on + strandat 53.326 kb on + strandat 53.327 kb on - strandat 53.327 kb on - strandat 53.327 kb on - strandat 53.327 kb on - strandat 53.444 kb on + strandat 53.473 kb on + strandat 53.474 kb on - strandat 53.527 kb on + strandat 53.540 kb on + strandat 53.542 kb on + strandat 53.542 kb on + strandat 53.543 kb on - strandat 53.576 kb on + strandat 53.587 kb on + strandat 53.587 kb on + strandat 53.588 kb on - strandat 53.666 kb on - strandat 53.720 kb on - strandat 53.725 kb on - strandat 53.735 kb on + strandat 53.812 kb on + strandat 53.812 kb on + strandat 53.829 kb on - strandat 53.829 kb on - strandat 53.893 kb on + strand, within GFF5172at 53.893 kb on + strand, within GFF5172at 53.925 kb on + strand, within GFF5172at 53.926 kb on - strand, within GFF5172at 54.030 kb on + strandat 54.030 kb on + strandat 54.030 kb on + strandat 54.055 kb on + strandat 54.073 kb on - strandat 54.073 kb on - strandat 54.078 kb on + strandat 54.079 kb on - strandat 54.103 kb on - strandat 54.220 kb on - strand, within GFF5173at 54.267 kb on + strand, within GFF5173at 54.267 kb on + strand, within GFF5173at 54.267 kb on + strand, within GFF5173at 54.267 kb on + strand, within GFF5173at 54.268 kb on - strand, within GFF5173at 54.373 kb on + strand, within GFF5173at 54.373 kb on + strand, within GFF5173at 54.373 kb on + strand, within GFF5173

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
51,373 + GFF5170 0.40 -0.9
51,373 + GFF5170 0.40 -1.0
51,373 + GFF5170 0.40 -0.6
51,373 + GFF5170 0.40 +0.2
51,377 + GFF5170 0.41 +0.1
51,377 + GFF5170 0.41 -0.2
51,377 + GFF5170 0.41 +1.3
51,377 + GFF5170 0.41 -0.5
51,377 + GFF5170 0.41 +1.2
51,377 + GFF5170 0.41 -1.1
51,378 - GFF5170 0.41 -0.4
51,378 - GFF5170 0.41 +2.1
51,378 - GFF5170 0.41 +1.1
51,378 - GFF5170 0.41 -0.3
51,629 + GFF5170 0.59 +0.6
51,630 - GFF5170 0.59 -0.0
51,630 - GFF5170 0.59 +0.6
51,725 + GFF5170 0.66 -0.2
51,725 + GFF5170 0.66 +0.6
51,725 + GFF5170 0.66 +1.6
51,726 - GFF5170 0.66 -0.2
51,726 - GFF5170 0.66 +1.6
51,728 + GFF5170 0.66 -0.5
51,728 + GFF5170 0.66 +0.2
51,728 + GFF5170 0.66 -0.9
51,728 + GFF5170 0.66 -0.1
51,728 + GFF5170 0.66 -0.2
51,728 + GFF5170 0.66 +1.1
51,728 + GFF5170 0.66 +0.5
51,728 + GFF5170 0.66 -0.5
51,729 - GFF5170 0.66 -0.9
51,729 - GFF5170 0.66 +0.8
51,729 - GFF5170 0.66 -0.1
51,729 - GFF5170 0.66 -0.7
51,729 - GFF5170 0.66 -0.1
51,729 - GFF5170 0.66 -1.2
51,729 - GFF5170 0.66 +0.6
51,729 - GFF5170 0.66 -0.3
51,729 - GFF5170 0.66 -0.9
51,806 + GFF5170 0.72 -0.4
51,806 + GFF5170 0.72 -2.1
52,145 + +0.5
52,146 - -1.4
52,146 - -0.5
52,215 + -0.7
52,215 + +0.2
52,215 + -0.4
52,216 - -0.1
52,216 - -1.4
52,216 - +0.6
52,216 - +0.3
52,216 - +0.5
52,220 - +0.3
52,387 + +0.0
52,387 + -1.7
52,571 - GFF5171 0.24 -0.7
52,723 - GFF5171 0.37 -0.4
52,934 + GFF5171 0.56 -0.4
53,023 + GFF5171 0.64 -0.9
53,023 + GFF5171 0.64 +0.4
53,024 - GFF5171 0.64 +1.2
53,312 - GFF5171 0.89 -0.9
53,326 + +0.2
53,326 + +1.4
53,327 - +1.0
53,327 - -0.3
53,327 - +1.0
53,327 - -0.4
53,444 + -0.6
53,473 + -0.5
53,474 - -1.2
53,527 + -2.9
53,540 + +1.4
53,542 + +0.9
53,542 + -0.1
53,543 - +0.1
53,576 + -0.8
53,587 + -0.8
53,587 + -0.4
53,588 - +1.0
53,666 - +1.1
53,720 - -0.4
53,725 - -0.5
53,735 + +0.4
53,812 + -0.2
53,812 + -0.4
53,829 - -0.1
53,829 - +1.4
53,893 + GFF5172 0.28 -0.3
53,893 + GFF5172 0.28 +0.8
53,925 + GFF5172 0.43 +0.3
53,926 - GFF5172 0.43 -2.2
54,030 + +0.3
54,030 + +0.2
54,030 + +0.8
54,055 + +0.9
54,073 - -0.1
54,073 - +0.4
54,078 + +0.4
54,079 - +0.3
54,103 - -0.7
54,220 - GFF5173 0.16 -1.0
54,267 + GFF5173 0.25 +0.6
54,267 + GFF5173 0.25 +1.2
54,267 + GFF5173 0.25 -0.2
54,267 + GFF5173 0.25 -0.8
54,268 - GFF5173 0.25 -0.3
54,373 + GFF5173 0.47 -0.9
54,373 + GFF5173 0.47 -0.4
54,373 + GFF5173 0.47 +0.7

Or see this region's nucleotide sequence