Strain Fitness in Pseudomonas sp. DMC3 around GFF4936

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4934 and GFF4935 are separated by 7 nucleotidesGFF4935 and GFF4936 are separated by 391 nucleotidesGFF4936 and GFF4937 are separated by 16 nucleotidesGFF4937 and GFF4938 are separated by 1 nucleotides GFF4934 - hypothetical protein, at 29,015 to 29,632 GFF4934 GFF4935 - hypothetical protein, at 29,640 to 29,801 GFF4935 GFF4936 - High-affinity gluconate transporter, at 30,193 to 31,542 GFF4936 GFF4937 - HTH-type transcriptional regulator HexR, at 31,559 to 32,419 GFF4937 GFF4938 - D-aminoacylase, at 32,421 to 33,878 GFF4938 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 29.194 kb on + strand, within GFF4934at 29.194 kb on + strand, within GFF4934at 29.194 kb on + strand, within GFF4934at 29.194 kb on + strand, within GFF4934at 29.194 kb on + strand, within GFF4934at 29.194 kb on + strand, within GFF4934at 29.194 kb on + strand, within GFF4934at 29.195 kb on - strand, within GFF4934at 29.195 kb on - strand, within GFF4934at 29.195 kb on - strand, within GFF4934at 29.195 kb on - strand, within GFF4934at 29.195 kb on - strand, within GFF4934at 29.195 kb on - strand, within GFF4934at 29.239 kb on + strand, within GFF4934at 29.239 kb on + strand, within GFF4934at 29.239 kb on + strand, within GFF4934at 29.239 kb on + strand, within GFF4934at 29.239 kb on + strand, within GFF4934at 29.239 kb on + strand, within GFF4934at 29.240 kb on - strand, within GFF4934at 29.240 kb on - strand, within GFF4934at 29.240 kb on - strand, within GFF4934at 29.240 kb on - strand, within GFF4934at 29.240 kb on - strand, within GFF4934at 29.240 kb on - strand, within GFF4934at 29.240 kb on - strand, within GFF4934at 29.240 kb on - strand, within GFF4934at 29.240 kb on - strand, within GFF4934at 29.243 kb on + strand, within GFF4934at 29.243 kb on + strand, within GFF4934at 29.243 kb on + strand, within GFF4934at 29.244 kb on - strand, within GFF4934at 29.244 kb on - strand, within GFF4934at 29.244 kb on - strand, within GFF4934at 29.262 kb on + strand, within GFF4934at 29.328 kb on + strand, within GFF4934at 29.328 kb on + strand, within GFF4934at 29.328 kb on + strand, within GFF4934at 29.329 kb on - strand, within GFF4934at 29.475 kb on + strand, within GFF4934at 29.475 kb on + strand, within GFF4934at 29.475 kb on + strand, within GFF4934at 29.476 kb on - strand, within GFF4934at 29.476 kb on - strand, within GFF4934at 29.507 kb on + strand, within GFF4934at 29.522 kb on + strand, within GFF4934at 29.522 kb on + strand, within GFF4934at 29.523 kb on - strand, within GFF4934at 29.552 kb on + strand, within GFF4934at 29.553 kb on - strand, within GFF4934at 29.553 kb on - strand, within GFF4934at 29.553 kb on - strand, within GFF4934at 29.553 kb on - strand, within GFF4934at 29.566 kb on - strand, within GFF4934at 29.589 kb on - strandat 29.642 kb on - strandat 29.642 kb on - strandat 29.790 kb on + strandat 29.790 kb on + strandat 29.790 kb on + strandat 29.790 kb on + strandat 29.791 kb on - strandat 29.791 kb on - strandat 29.791 kb on - strandat 29.791 kb on - strandat 29.791 kb on - strandat 29.821 kb on - strandat 29.821 kb on - strandat 29.821 kb on - strandat 29.821 kb on - strandat 29.821 kb on - strandat 29.821 kb on - strandat 29.833 kb on + strandat 29.833 kb on + strandat 29.834 kb on - strandat 29.835 kb on + strandat 29.835 kb on + strandat 29.836 kb on - strandat 29.836 kb on - strandat 29.836 kb on - strandat 29.836 kb on - strandat 30.053 kb on + strandat 30.054 kb on - strandat 30.069 kb on + strandat 30.069 kb on + strandat 30.070 kb on - strandat 30.073 kb on + strandat 30.073 kb on + strandat 30.073 kb on + strandat 30.073 kb on + strandat 30.073 kb on + strandat 30.074 kb on - strandat 30.074 kb on - strandat 30.074 kb on - strandat 30.361 kb on + strand, within GFF4936at 30.362 kb on - strand, within GFF4936at 30.362 kb on - strand, within GFF4936at 30.362 kb on - strand, within GFF4936at 30.393 kb on + strand, within GFF4936at 30.393 kb on + strand, within GFF4936at 30.393 kb on + strand, within GFF4936at 30.393 kb on + strand, within GFF4936at 30.394 kb on - strand, within GFF4936at 30.712 kb on + strand, within GFF4936at 30.713 kb on - strand, within GFF4936at 30.713 kb on - strand, within GFF4936at 30.743 kb on - strand, within GFF4936at 30.895 kb on - strand, within GFF4936at 31.435 kb on + strandat 31.435 kb on + strandat 31.436 kb on - strandat 31.436 kb on - strandat 31.436 kb on - strandat 31.436 kb on - strandat 31.532 kb on - strandat 31.541 kb on - strandat 31.572 kb on - strandat 31.755 kb on + strand, within GFF4937at 31.755 kb on + strand, within GFF4937at 31.755 kb on + strand, within GFF4937at 31.755 kb on + strand, within GFF4937at 31.755 kb on + strand, within GFF4937at 31.755 kb on + strand, within GFF4937at 31.756 kb on - strand, within GFF4937at 31.756 kb on - strand, within GFF4937at 31.756 kb on - strand, within GFF4937at 31.835 kb on + strand, within GFF4937at 31.835 kb on + strand, within GFF4937at 31.836 kb on - strand, within GFF4937at 31.924 kb on - strand, within GFF4937at 32.255 kb on + strand, within GFF4937at 32.276 kb on + strand, within GFF4937at 32.381 kb on + strandat 32.427 kb on + strandat 32.428 kb on - strandat 32.481 kb on + strandat 32.481 kb on + strandat 32.481 kb on + strandat 32.481 kb on + strandat 32.482 kb on - strandat 32.482 kb on - strandat 32.483 kb on + strandat 32.483 kb on + strandat 32.483 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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29,194 + GFF4934 0.29 -0.4
29,194 + GFF4934 0.29 +1.0
29,194 + GFF4934 0.29 -1.4
29,194 + GFF4934 0.29 +0.9
29,194 + GFF4934 0.29 +0.2
29,194 + GFF4934 0.29 -0.4
29,194 + GFF4934 0.29 -0.3
29,195 - GFF4934 0.29 -0.3
29,195 - GFF4934 0.29 +1.3
29,195 - GFF4934 0.29 -0.7
29,195 - GFF4934 0.29 +0.7
29,195 - GFF4934 0.29 -0.2
29,195 - GFF4934 0.29 +0.1
29,239 + GFF4934 0.36 -0.6
29,239 + GFF4934 0.36 +1.0
29,239 + GFF4934 0.36 +0.3
29,239 + GFF4934 0.36 +1.0
29,239 + GFF4934 0.36 -1.8
29,239 + GFF4934 0.36 +0.8
29,240 - GFF4934 0.36 +0.0
29,240 - GFF4934 0.36 +1.0
29,240 - GFF4934 0.36 -0.0
29,240 - GFF4934 0.36 -0.4
29,240 - GFF4934 0.36 +0.4
29,240 - GFF4934 0.36 -0.1
29,240 - GFF4934 0.36 +1.5
29,240 - GFF4934 0.36 -0.1
29,240 - GFF4934 0.36 -0.6
29,243 + GFF4934 0.37 -0.1
29,243 + GFF4934 0.37 +0.2
29,243 + GFF4934 0.37 -0.5
29,244 - GFF4934 0.37 +1.9
29,244 - GFF4934 0.37 -2.6
29,244 - GFF4934 0.37 -0.7
29,262 + GFF4934 0.40 -0.7
29,328 + GFF4934 0.51 -0.5
29,328 + GFF4934 0.51 +0.7
29,328 + GFF4934 0.51 -1.9
29,329 - GFF4934 0.51 -0.3
29,475 + GFF4934 0.74 -0.4
29,475 + GFF4934 0.74 -0.3
29,475 + GFF4934 0.74 +0.1
29,476 - GFF4934 0.75 -0.9
29,476 - GFF4934 0.75 +0.3
29,507 + GFF4934 0.80 -0.4
29,522 + GFF4934 0.82 +0.2
29,522 + GFF4934 0.82 +0.4
29,523 - GFF4934 0.82 -1.8
29,552 + GFF4934 0.87 -0.0
29,553 - GFF4934 0.87 -0.5
29,553 - GFF4934 0.87 +0.9
29,553 - GFF4934 0.87 +0.2
29,553 - GFF4934 0.87 -0.2
29,566 - GFF4934 0.89 +0.0
29,589 - +0.3
29,642 - -0.5
29,642 - -0.1
29,790 + -0.2
29,790 + -0.9
29,790 + -0.5
29,790 + -0.6
29,791 - +1.4
29,791 - -0.5
29,791 - -0.1
29,791 - -0.6
29,791 - -0.6
29,821 - -0.5
29,821 - +0.1
29,821 - -0.0
29,821 - -0.2
29,821 - -1.3
29,821 - +0.1
29,833 + -0.1
29,833 + -0.8
29,834 - +0.2
29,835 + -0.4
29,835 + +1.2
29,836 - +0.1
29,836 - -0.8
29,836 - -0.8
29,836 - +0.6
30,053 + +0.9
30,054 - +0.0
30,069 + +1.3
30,069 + +0.9
30,070 - -1.0
30,073 + -0.3
30,073 + -0.1
30,073 + -0.8
30,073 + -0.9
30,073 + +1.5
30,074 - -1.3
30,074 - +0.6
30,074 - -0.4
30,361 + GFF4936 0.12 -1.9
30,362 - GFF4936 0.13 -0.5
30,362 - GFF4936 0.13 -0.6
30,362 - GFF4936 0.13 +0.6
30,393 + GFF4936 0.15 +0.7
30,393 + GFF4936 0.15 -0.1
30,393 + GFF4936 0.15 -0.6
30,393 + GFF4936 0.15 -0.0
30,394 - GFF4936 0.15 +2.0
30,712 + GFF4936 0.38 +0.1
30,713 - GFF4936 0.39 -0.1
30,713 - GFF4936 0.39 +0.4
30,743 - GFF4936 0.41 +0.5
30,895 - GFF4936 0.52 -0.6
31,435 + +0.5
31,435 + -0.1
31,436 - -0.4
31,436 - -1.2
31,436 - -0.1
31,436 - +0.5
31,532 - +0.3
31,541 - +1.2
31,572 - +0.1
31,755 + GFF4937 0.23 +0.1
31,755 + GFF4937 0.23 +0.2
31,755 + GFF4937 0.23 -0.4
31,755 + GFF4937 0.23 +0.6
31,755 + GFF4937 0.23 +0.1
31,755 + GFF4937 0.23 +1.3
31,756 - GFF4937 0.23 +0.0
31,756 - GFF4937 0.23 -0.5
31,756 - GFF4937 0.23 +0.1
31,835 + GFF4937 0.32 -0.8
31,835 + GFF4937 0.32 +0.3
31,836 - GFF4937 0.32 +0.0
31,924 - GFF4937 0.42 -0.4
32,255 + GFF4937 0.81 -0.8
32,276 + GFF4937 0.83 +0.3
32,381 + -0.1
32,427 + -0.0
32,428 - -0.3
32,481 + +0.1
32,481 + +0.5
32,481 + -0.2
32,481 + -0.7
32,482 - +0.1
32,482 - -0.2
32,483 + -0.7
32,483 + -1.0
32,483 + +0.6

Or see this region's nucleotide sequence