Strain Fitness in Pseudomonas sp. DMC3 around GFF4635

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4634 and GFF4635 are separated by 234 nucleotidesGFF4635 and GFF4636 are separated by 176 nucleotides GFF4634 - Membrane-bound lytic murein transglycosylase F, at 116,557 to 117,978 GFF4634 GFF4635 - 3'-5' ssDNA/RNA exonuclease TatD, at 118,213 to 119,019 GFF4635 GFF4636 - hypothetical protein, at 119,196 to 120,677 GFF4636 Position (kb) 118 119 120Strain fitness (log2 ratio) -1 0 1 2at 117.524 kb on + strand, within GFF4634at 117.524 kb on + strand, within GFF4634at 117.740 kb on + strand, within GFF4634at 117.740 kb on + strand, within GFF4634at 117.740 kb on + strand, within GFF4634at 117.740 kb on + strand, within GFF4634at 117.741 kb on - strand, within GFF4634at 117.741 kb on - strand, within GFF4634at 117.741 kb on - strand, within GFF4634at 117.741 kb on - strand, within GFF4634at 117.741 kb on - strand, within GFF4634at 117.767 kb on + strand, within GFF4634at 117.768 kb on - strand, within GFF4634at 118.060 kb on + strandat 118.061 kb on - strandat 118.162 kb on - strandat 118.163 kb on + strandat 118.180 kb on + strandat 118.180 kb on + strandat 118.206 kb on + strandat 118.207 kb on - strandat 118.207 kb on - strandat 118.291 kb on + strandat 118.292 kb on - strandat 118.410 kb on + strand, within GFF4635at 118.720 kb on + strand, within GFF4635at 118.720 kb on + strand, within GFF4635at 118.720 kb on + strand, within GFF4635at 118.721 kb on - strand, within GFF4635at 118.721 kb on - strand, within GFF4635at 118.721 kb on - strand, within GFF4635at 118.846 kb on + strand, within GFF4635at 118.846 kb on + strand, within GFF4635at 118.846 kb on + strand, within GFF4635at 118.846 kb on + strand, within GFF4635at 118.847 kb on - strand, within GFF4635at 118.847 kb on - strand, within GFF4635at 118.847 kb on - strand, within GFF4635at 118.904 kb on - strand, within GFF4635at 118.904 kb on - strand, within GFF4635at 118.904 kb on - strand, within GFF4635at 118.904 kb on - strand, within GFF4635at 118.971 kb on + strandat 118.971 kb on + strandat 118.971 kb on + strandat 118.972 kb on - strandat 118.972 kb on - strandat 118.972 kb on - strandat 118.998 kb on + strandat 118.999 kb on - strandat 119.017 kb on + strandat 119.017 kb on + strandat 119.051 kb on + strandat 119.051 kb on + strandat 119.051 kb on + strandat 119.051 kb on + strandat 119.051 kb on + strandat 119.051 kb on + strandat 119.051 kb on + strandat 119.051 kb on + strandat 119.052 kb on - strandat 119.052 kb on - strandat 119.052 kb on - strandat 119.052 kb on - strandat 119.052 kb on - strandat 119.052 kb on - strandat 119.052 kb on - strandat 119.066 kb on + strandat 119.066 kb on + strandat 119.066 kb on + strandat 119.066 kb on + strandat 119.067 kb on - strandat 119.076 kb on - strandat 119.076 kb on - strandat 119.210 kb on + strandat 119.210 kb on + strandat 119.210 kb on + strandat 119.211 kb on - strandat 119.211 kb on - strandat 119.281 kb on + strandat 119.281 kb on + strandat 119.282 kb on - strandat 119.282 kb on - strandat 119.286 kb on + strandat 119.286 kb on + strandat 119.286 kb on + strandat 119.286 kb on + strandat 119.287 kb on - strandat 119.287 kb on - strandat 119.287 kb on - strandat 119.577 kb on + strand, within GFF4636at 119.622 kb on + strand, within GFF4636at 119.622 kb on + strand, within GFF4636at 119.623 kb on - strand, within GFF4636at 119.623 kb on - strand, within GFF4636at 119.623 kb on - strand, within GFF4636at 119.623 kb on - strand, within GFF4636at 119.839 kb on + strand, within GFF4636at 119.988 kb on + strand, within GFF4636at 119.989 kb on - strand, within GFF4636

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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117,524 + GFF4634 0.68 +0.0
117,524 + GFF4634 0.68 -0.5
117,740 + GFF4634 0.83 +0.7
117,740 + GFF4634 0.83 -0.2
117,740 + GFF4634 0.83 -0.9
117,740 + GFF4634 0.83 +0.0
117,741 - GFF4634 0.83 +1.1
117,741 - GFF4634 0.83 -0.1
117,741 - GFF4634 0.83 +0.1
117,741 - GFF4634 0.83 +0.4
117,741 - GFF4634 0.83 -0.3
117,767 + GFF4634 0.85 +0.4
117,768 - GFF4634 0.85 +0.4
118,060 + +0.2
118,061 - -0.5
118,162 - -0.6
118,163 + -0.3
118,180 + +0.9
118,180 + +0.0
118,206 + +0.6
118,207 - -1.1
118,207 - +0.1
118,291 + -0.1
118,292 - +1.9
118,410 + GFF4635 0.24 +0.6
118,720 + GFF4635 0.63 +0.9
118,720 + GFF4635 0.63 +0.4
118,720 + GFF4635 0.63 -1.1
118,721 - GFF4635 0.63 -0.4
118,721 - GFF4635 0.63 -1.4
118,721 - GFF4635 0.63 +0.3
118,846 + GFF4635 0.78 +0.3
118,846 + GFF4635 0.78 +0.9
118,846 + GFF4635 0.78 -0.1
118,846 + GFF4635 0.78 +0.2
118,847 - GFF4635 0.79 +0.2
118,847 - GFF4635 0.79 +0.6
118,847 - GFF4635 0.79 +0.0
118,904 - GFF4635 0.86 -1.3
118,904 - GFF4635 0.86 +0.9
118,904 - GFF4635 0.86 +0.0
118,904 - GFF4635 0.86 -1.0
118,971 + -1.3
118,971 + -0.1
118,971 + -0.9
118,972 - -0.7
118,972 - +0.1
118,972 - +0.6
118,998 + +1.0
118,999 - -1.0
119,017 + +1.8
119,017 + -1.0
119,051 + -0.6
119,051 + +1.2
119,051 + +0.4
119,051 + +0.4
119,051 + -0.2
119,051 + -0.0
119,051 + -0.4
119,051 + -0.8
119,052 - +1.0
119,052 - -0.3
119,052 - +1.2
119,052 - +0.0
119,052 - +0.2
119,052 - +0.5
119,052 - -0.8
119,066 + -0.5
119,066 + +0.1
119,066 + -0.3
119,066 + +0.0
119,067 - -0.0
119,076 - +0.3
119,076 - +0.0
119,210 + +1.1
119,210 + -0.1
119,210 + +0.4
119,211 - +1.6
119,211 - +0.2
119,281 + +0.6
119,281 + -0.3
119,282 - +0.6
119,282 - +0.8
119,286 + +0.4
119,286 + +0.9
119,286 + -0.2
119,286 + +0.1
119,287 - -0.8
119,287 - +1.3
119,287 - +1.1
119,577 + GFF4636 0.26 -0.1
119,622 + GFF4636 0.29 +1.3
119,622 + GFF4636 0.29 +1.3
119,623 - GFF4636 0.29 -0.1
119,623 - GFF4636 0.29 +2.0
119,623 - GFF4636 0.29 +0.5
119,623 - GFF4636 0.29 +1.1
119,839 + GFF4636 0.43 +0.0
119,988 + GFF4636 0.53 -0.0
119,989 - GFF4636 0.54 +0.7

Or see this region's nucleotide sequence