Strain Fitness in Pseudomonas sp. DMC3 around GFF4555

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4554 and GFF4555 are separated by 136 nucleotidesGFF4555 and GFF4556 are separated by 85 nucleotidesGFF4556 and GFF4557 are separated by 92 nucleotides GFF4554 - hypothetical protein, at 39,469 to 40,023 GFF4554 GFF4555 - hypothetical protein, at 40,160 to 41,173 GFF4555 GFF4556 - hypothetical protein, at 41,259 to 42,056 GFF4556 GFF4557 - HTH-type transcriptional repressor KstR2, at 42,149 to 42,772 GFF4557 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 39.269 kb on + strandat 39.270 kb on - strandat 39.273 kb on + strandat 39.273 kb on + strandat 39.352 kb on + strandat 39.352 kb on + strandat 39.353 kb on - strandat 39.353 kb on - strandat 39.353 kb on - strandat 39.411 kb on - strandat 39.447 kb on + strandat 39.447 kb on + strandat 39.447 kb on + strandat 39.448 kb on - strandat 39.448 kb on - strandat 39.448 kb on - strandat 39.448 kb on - strandat 39.482 kb on + strandat 39.482 kb on + strandat 39.482 kb on + strandat 39.482 kb on + strandat 39.483 kb on - strandat 39.483 kb on - strandat 39.509 kb on + strandat 39.664 kb on + strand, within GFF4554at 39.664 kb on + strand, within GFF4554at 39.664 kb on + strand, within GFF4554at 39.730 kb on + strand, within GFF4554at 39.731 kb on - strand, within GFF4554at 39.731 kb on - strand, within GFF4554at 39.731 kb on - strand, within GFF4554at 39.874 kb on + strand, within GFF4554at 39.875 kb on - strand, within GFF4554at 39.875 kb on - strand, within GFF4554at 39.875 kb on - strand, within GFF4554at 40.156 kb on + strandat 40.157 kb on - strandat 40.270 kb on + strand, within GFF4555at 40.271 kb on - strand, within GFF4555at 40.271 kb on - strand, within GFF4555at 40.347 kb on + strand, within GFF4555at 40.347 kb on + strand, within GFF4555at 40.347 kb on + strand, within GFF4555at 40.347 kb on + strand, within GFF4555at 40.347 kb on + strand, within GFF4555at 40.348 kb on - strand, within GFF4555at 40.348 kb on - strand, within GFF4555at 40.348 kb on - strand, within GFF4555at 40.348 kb on - strand, within GFF4555at 40.348 kb on - strand, within GFF4555at 40.348 kb on - strand, within GFF4555at 40.348 kb on - strand, within GFF4555at 40.435 kb on - strand, within GFF4555at 40.449 kb on + strand, within GFF4555at 40.449 kb on + strand, within GFF4555at 40.449 kb on + strand, within GFF4555at 40.449 kb on + strand, within GFF4555at 40.449 kb on + strand, within GFF4555at 40.450 kb on - strand, within GFF4555at 40.450 kb on - strand, within GFF4555at 40.450 kb on - strand, within GFF4555at 40.450 kb on - strand, within GFF4555at 40.483 kb on - strand, within GFF4555at 40.494 kb on + strand, within GFF4555at 40.495 kb on - strand, within GFF4555at 40.788 kb on + strand, within GFF4555at 40.789 kb on - strand, within GFF4555at 40.972 kb on - strand, within GFF4555at 40.972 kb on - strand, within GFF4555at 41.188 kb on + strandat 41.189 kb on - strandat 41.189 kb on - strandat 41.189 kb on - strandat 41.189 kb on - strandat 41.293 kb on + strandat 41.293 kb on + strandat 41.293 kb on + strandat 41.293 kb on + strandat 41.293 kb on + strandat 41.294 kb on - strandat 41.294 kb on - strandat 41.294 kb on - strandat 41.294 kb on - strandat 41.294 kb on - strandat 41.396 kb on - strand, within GFF4556at 41.396 kb on - strand, within GFF4556at 41.404 kb on + strand, within GFF4556at 41.404 kb on + strand, within GFF4556at 41.404 kb on + strand, within GFF4556at 41.404 kb on + strand, within GFF4556at 41.404 kb on + strand, within GFF4556at 41.404 kb on + strand, within GFF4556at 41.404 kb on + strand, within GFF4556at 41.405 kb on - strand, within GFF4556at 41.405 kb on - strand, within GFF4556at 41.405 kb on - strand, within GFF4556at 41.405 kb on - strand, within GFF4556at 41.405 kb on - strand, within GFF4556at 41.405 kb on - strand, within GFF4556at 41.418 kb on - strand, within GFF4556at 41.468 kb on - strand, within GFF4556at 41.479 kb on + strand, within GFF4556at 41.479 kb on + strand, within GFF4556at 41.479 kb on + strand, within GFF4556at 41.479 kb on + strand, within GFF4556at 41.480 kb on - strand, within GFF4556at 41.480 kb on - strand, within GFF4556at 41.480 kb on - strand, within GFF4556at 41.566 kb on + strand, within GFF4556at 41.566 kb on + strand, within GFF4556at 41.581 kb on + strand, within GFF4556at 41.582 kb on - strand, within GFF4556at 41.582 kb on - strand, within GFF4556at 41.615 kb on - strand, within GFF4556at 41.666 kb on - strand, within GFF4556at 41.666 kb on - strand, within GFF4556at 41.854 kb on + strand, within GFF4556at 41.854 kb on + strand, within GFF4556at 41.854 kb on + strand, within GFF4556at 41.855 kb on - strand, within GFF4556at 41.935 kb on + strand, within GFF4556at 41.935 kb on + strand, within GFF4556at 41.936 kb on - strand, within GFF4556at 41.991 kb on + strandat 41.992 kb on - strandat 42.119 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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39,269 + +0.2
39,270 - +0.1
39,273 + +0.5
39,273 + +2.4
39,352 + -0.6
39,352 + -0.4
39,353 - +0.9
39,353 - +0.4
39,353 - +0.2
39,411 - -0.2
39,447 + -0.5
39,447 + -0.1
39,447 + -0.7
39,448 - -2.3
39,448 - +0.5
39,448 - +0.0
39,448 - +1.8
39,482 + +1.2
39,482 + -0.7
39,482 + +0.3
39,482 + -0.1
39,483 - +0.8
39,483 - -0.0
39,509 + -1.8
39,664 + GFF4554 0.35 -1.5
39,664 + GFF4554 0.35 +0.5
39,664 + GFF4554 0.35 -0.2
39,730 + GFF4554 0.47 +0.8
39,731 - GFF4554 0.47 +0.1
39,731 - GFF4554 0.47 +1.0
39,731 - GFF4554 0.47 -0.1
39,874 + GFF4554 0.73 -1.2
39,875 - GFF4554 0.73 +0.3
39,875 - GFF4554 0.73 +0.6
39,875 - GFF4554 0.73 -1.5
40,156 + -1.5
40,157 - -0.7
40,270 + GFF4555 0.11 -0.5
40,271 - GFF4555 0.11 -0.2
40,271 - GFF4555 0.11 -0.4
40,347 + GFF4555 0.18 +0.5
40,347 + GFF4555 0.18 -0.5
40,347 + GFF4555 0.18 +1.0
40,347 + GFF4555 0.18 +0.9
40,347 + GFF4555 0.18 +0.1
40,348 - GFF4555 0.19 +0.2
40,348 - GFF4555 0.19 +0.5
40,348 - GFF4555 0.19 +0.0
40,348 - GFF4555 0.19 -1.2
40,348 - GFF4555 0.19 +0.1
40,348 - GFF4555 0.19 -0.3
40,348 - GFF4555 0.19 +1.9
40,435 - GFF4555 0.27 -0.5
40,449 + GFF4555 0.29 +0.5
40,449 + GFF4555 0.29 -0.1
40,449 + GFF4555 0.29 +0.8
40,449 + GFF4555 0.29 +0.1
40,449 + GFF4555 0.29 -0.4
40,450 - GFF4555 0.29 -1.5
40,450 - GFF4555 0.29 -0.5
40,450 - GFF4555 0.29 -0.9
40,450 - GFF4555 0.29 -0.2
40,483 - GFF4555 0.32 -0.0
40,494 + GFF4555 0.33 -0.3
40,495 - GFF4555 0.33 -0.7
40,788 + GFF4555 0.62 +0.2
40,789 - GFF4555 0.62 +0.2
40,972 - GFF4555 0.80 -0.7
40,972 - GFF4555 0.80 -0.0
41,188 + -0.0
41,189 - +0.3
41,189 - +1.1
41,189 - -0.4
41,189 - -0.3
41,293 + -0.5
41,293 + -1.0
41,293 + +1.8
41,293 + -0.2
41,293 + +0.5
41,294 - +0.9
41,294 - -0.4
41,294 - -0.7
41,294 - +0.2
41,294 - +0.0
41,396 - GFF4556 0.17 -0.4
41,396 - GFF4556 0.17 -0.3
41,404 + GFF4556 0.18 -0.6
41,404 + GFF4556 0.18 +0.3
41,404 + GFF4556 0.18 -0.5
41,404 + GFF4556 0.18 +0.9
41,404 + GFF4556 0.18 +0.4
41,404 + GFF4556 0.18 -0.3
41,404 + GFF4556 0.18 +0.3
41,405 - GFF4556 0.18 +0.5
41,405 - GFF4556 0.18 -0.9
41,405 - GFF4556 0.18 +0.6
41,405 - GFF4556 0.18 +0.0
41,405 - GFF4556 0.18 +0.1
41,405 - GFF4556 0.18 +0.9
41,418 - GFF4556 0.20 +1.0
41,468 - GFF4556 0.26 +0.7
41,479 + GFF4556 0.28 -0.1
41,479 + GFF4556 0.28 +0.4
41,479 + GFF4556 0.28 +0.6
41,479 + GFF4556 0.28 +0.1
41,480 - GFF4556 0.28 +0.1
41,480 - GFF4556 0.28 +0.5
41,480 - GFF4556 0.28 +0.2
41,566 + GFF4556 0.38 -0.4
41,566 + GFF4556 0.38 -1.0
41,581 + GFF4556 0.40 -0.4
41,582 - GFF4556 0.40 -0.5
41,582 - GFF4556 0.40 +0.2
41,615 - GFF4556 0.45 +0.3
41,666 - GFF4556 0.51 +0.4
41,666 - GFF4556 0.51 +0.1
41,854 + GFF4556 0.75 -0.8
41,854 + GFF4556 0.75 -0.4
41,854 + GFF4556 0.75 +0.4
41,855 - GFF4556 0.75 +0.8
41,935 + GFF4556 0.85 -0.4
41,935 + GFF4556 0.85 +0.6
41,936 - GFF4556 0.85 +0.4
41,991 + -0.4
41,992 - +0.5
42,119 - -0.5

Or see this region's nucleotide sequence