Strain Fitness in Pseudomonas sp. DMC3 around GFF2421

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2420 and GFF2421 are separated by 25 nucleotidesGFF2421 and GFF2422 are separated by 13 nucleotides GFF2420 - hypothetical protein, at 202,642 to 203,958 GFF2420 GFF2421 - hypothetical protein, at 203,984 to 206,029 GFF2421 GFF2422 - hypothetical protein, at 206,043 to 207,611 GFF2422 Position (kb) 203 204 205 206 207Strain fitness (log2 ratio) -1 0 1 2at 203.154 kb on + strand, within GFF2420at 203.347 kb on + strand, within GFF2420at 203.348 kb on - strand, within GFF2420at 203.348 kb on - strand, within GFF2420at 203.410 kb on + strand, within GFF2420at 203.728 kb on + strand, within GFF2420at 203.728 kb on + strand, within GFF2420at 203.728 kb on + strand, within GFF2420at 203.729 kb on - strand, within GFF2420at 203.729 kb on - strand, within GFF2420at 203.738 kb on - strand, within GFF2420at 203.738 kb on - strand, within GFF2420at 203.738 kb on - strand, within GFF2420at 203.832 kb on - strandat 203.923 kb on + strandat 203.924 kb on - strandat 203.954 kb on + strandat 203.954 kb on + strandat 203.956 kb on + strandat 203.956 kb on + strandat 203.956 kb on + strandat 203.957 kb on - strandat 203.968 kb on + strandat 203.968 kb on + strandat 203.969 kb on - strandat 203.971 kb on + strandat 203.971 kb on + strandat 203.971 kb on + strandat 203.972 kb on - strandat 203.972 kb on - strandat 203.972 kb on - strandat 204.188 kb on + strandat 204.653 kb on + strand, within GFF2421at 204.653 kb on + strand, within GFF2421at 204.654 kb on - strand, within GFF2421at 204.778 kb on + strand, within GFF2421at 204.778 kb on + strand, within GFF2421at 204.778 kb on + strand, within GFF2421at 204.778 kb on + strand, within GFF2421at 205.071 kb on - strand, within GFF2421at 205.100 kb on + strand, within GFF2421at 205.100 kb on + strand, within GFF2421at 205.343 kb on + strand, within GFF2421at 205.343 kb on + strand, within GFF2421at 205.343 kb on + strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.379 kb on + strand, within GFF2421at 205.379 kb on + strand, within GFF2421at 205.379 kb on + strand, within GFF2421at 205.379 kb on + strand, within GFF2421at 205.380 kb on - strand, within GFF2421at 205.380 kb on - strand, within GFF2421at 205.380 kb on - strand, within GFF2421at 205.380 kb on - strand, within GFF2421at 205.475 kb on + strand, within GFF2421at 205.475 kb on + strand, within GFF2421at 205.475 kb on + strand, within GFF2421at 205.597 kb on + strand, within GFF2421at 205.597 kb on + strand, within GFF2421at 205.598 kb on - strand, within GFF2421at 205.799 kb on + strand, within GFF2421at 205.799 kb on + strand, within GFF2421at 205.799 kb on + strand, within GFF2421at 205.799 kb on + strand, within GFF2421at 205.800 kb on - strand, within GFF2421at 205.800 kb on - strand, within GFF2421at 205.949 kb on + strandat 205.949 kb on + strandat 205.950 kb on - strandat 205.950 kb on - strandat 205.958 kb on + strandat 205.961 kb on + strandat 205.961 kb on + strandat 205.961 kb on + strandat 205.962 kb on - strandat 205.962 kb on - strandat 205.962 kb on - strandat 205.962 kb on - strandat 205.962 kb on - strandat 205.962 kb on - strandat 206.028 kb on - strandat 206.038 kb on - strandat 206.067 kb on + strandat 206.096 kb on + strandat 206.096 kb on + strandat 206.096 kb on + strandat 206.097 kb on - strandat 206.097 kb on - strandat 206.097 kb on - strandat 206.226 kb on + strand, within GFF2422at 206.226 kb on + strand, within GFF2422at 206.227 kb on - strand, within GFF2422at 206.442 kb on + strand, within GFF2422at 206.442 kb on + strand, within GFF2422at 206.442 kb on + strand, within GFF2422at 206.443 kb on - strand, within GFF2422at 206.443 kb on - strand, within GFF2422at 206.443 kb on - strand, within GFF2422at 206.443 kb on - strand, within GFF2422at 206.508 kb on + strand, within GFF2422at 206.508 kb on + strand, within GFF2422at 206.509 kb on - strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.698 kb on - strand, within GFF2422at 206.698 kb on - strand, within GFF2422at 206.698 kb on - strand, within GFF2422at 206.727 kb on + strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.825 kb on + strand, within GFF2422at 206.826 kb on - strand, within GFF2422at 206.901 kb on - strand, within GFF2422at 206.975 kb on + strand, within GFF2422at 206.976 kb on - strand, within GFF2422

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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203,154 + GFF2420 0.39 +1.8
203,347 + GFF2420 0.54 +1.4
203,348 - GFF2420 0.54 +1.5
203,348 - GFF2420 0.54 -0.0
203,410 + GFF2420 0.58 +0.1
203,728 + GFF2420 0.82 +0.9
203,728 + GFF2420 0.82 +1.9
203,728 + GFF2420 0.82 +0.1
203,729 - GFF2420 0.83 +0.7
203,729 - GFF2420 0.83 +1.1
203,738 - GFF2420 0.83 +0.4
203,738 - GFF2420 0.83 +0.5
203,738 - GFF2420 0.83 +1.8
203,832 - +1.0
203,923 + +1.5
203,924 - -0.0
203,954 + -0.1
203,954 + -0.7
203,956 + +0.6
203,956 + -0.0
203,956 + -0.7
203,957 - +0.6
203,968 + -0.3
203,968 + -1.0
203,969 - +2.0
203,971 + -0.3
203,971 + +0.3
203,971 + +1.6
203,972 - +1.1
203,972 - +1.2
203,972 - +1.1
204,188 + +0.3
204,653 + GFF2421 0.33 +0.6
204,653 + GFF2421 0.33 +0.8
204,654 - GFF2421 0.33 +0.6
204,778 + GFF2421 0.39 +1.5
204,778 + GFF2421 0.39 +0.7
204,778 + GFF2421 0.39 +0.4
204,778 + GFF2421 0.39 -0.2
205,071 - GFF2421 0.53 +0.4
205,100 + GFF2421 0.55 +2.4
205,100 + GFF2421 0.55 +0.7
205,343 + GFF2421 0.66 +1.2
205,343 + GFF2421 0.66 +1.1
205,343 + GFF2421 0.66 +1.1
205,344 - GFF2421 0.66 +1.2
205,344 - GFF2421 0.66 +0.6
205,344 - GFF2421 0.66 +0.2
205,344 - GFF2421 0.66 +1.1
205,344 - GFF2421 0.66 +0.8
205,344 - GFF2421 0.66 +1.6
205,344 - GFF2421 0.66 +2.0
205,344 - GFF2421 0.66 +1.1
205,379 + GFF2421 0.68 +1.5
205,379 + GFF2421 0.68 +1.0
205,379 + GFF2421 0.68 -0.2
205,379 + GFF2421 0.68 +1.4
205,380 - GFF2421 0.68 +0.7
205,380 - GFF2421 0.68 +0.9
205,380 - GFF2421 0.68 +1.9
205,380 - GFF2421 0.68 -0.3
205,475 + GFF2421 0.73 +1.9
205,475 + GFF2421 0.73 +1.1
205,475 + GFF2421 0.73 +0.1
205,597 + GFF2421 0.79 +0.6
205,597 + GFF2421 0.79 +1.2
205,598 - GFF2421 0.79 +0.5
205,799 + GFF2421 0.89 +1.4
205,799 + GFF2421 0.89 +1.6
205,799 + GFF2421 0.89 +0.9
205,799 + GFF2421 0.89 +1.0
205,800 - GFF2421 0.89 +1.0
205,800 - GFF2421 0.89 -0.4
205,949 + +0.1
205,949 + +1.3
205,950 - +0.5
205,950 - +2.7
205,958 + +1.1
205,961 + +0.9
205,961 + +1.1
205,961 + +1.6
205,962 - +1.3
205,962 - +1.1
205,962 - +0.7
205,962 - +1.3
205,962 - -0.2
205,962 - +0.2
206,028 - +0.6
206,038 - +0.6
206,067 + +0.7
206,096 + +0.8
206,096 + +0.3
206,096 + -0.3
206,097 - +1.0
206,097 - -0.2
206,097 - -0.4
206,226 + GFF2422 0.12 +1.1
206,226 + GFF2422 0.12 -0.4
206,227 - GFF2422 0.12 +0.2
206,442 + GFF2422 0.25 +1.6
206,442 + GFF2422 0.25 +0.3
206,442 + GFF2422 0.25 +1.4
206,443 - GFF2422 0.25 +0.3
206,443 - GFF2422 0.25 -0.9
206,443 - GFF2422 0.25 -0.0
206,443 - GFF2422 0.25 +2.6
206,508 + GFF2422 0.30 +1.0
206,508 + GFF2422 0.30 -0.0
206,509 - GFF2422 0.30 +0.2
206,697 + GFF2422 0.42 +1.3
206,697 + GFF2422 0.42 +0.7
206,697 + GFF2422 0.42 +0.1
206,697 + GFF2422 0.42 +0.5
206,697 + GFF2422 0.42 +0.5
206,697 + GFF2422 0.42 +1.0
206,697 + GFF2422 0.42 +1.9
206,697 + GFF2422 0.42 +1.7
206,698 - GFF2422 0.42 +0.1
206,698 - GFF2422 0.42 +1.1
206,698 - GFF2422 0.42 +0.7
206,727 + GFF2422 0.44 +1.3
206,728 - GFF2422 0.44 +0.9
206,728 - GFF2422 0.44 +1.2
206,728 - GFF2422 0.44 +1.4
206,728 - GFF2422 0.44 +0.6
206,825 + GFF2422 0.50 +1.2
206,826 - GFF2422 0.50 -0.9
206,901 - GFF2422 0.55 +1.2
206,975 + GFF2422 0.59 +0.8
206,976 - GFF2422 0.59 +0.7

Or see this region's nucleotide sequence