Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1408 and GFF1409 are separated by 150 nucleotides GFF1409 and GFF1410 are separated by 186 nucleotides
GFF1408 - hypothetical protein, at 178,882 to 179,631
GFF1408
GFF1409 - hypothetical protein, at 179,782 to 180,567
GFF1409
GFF1410 - hypothetical protein, at 180,754 to 181,317
GFF1410
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.823 kb on + strand at 178.823 kb on + strand at 178.824 kb on - strand at 178.824 kb on - strand at 178.824 kb on - strand at 178.871 kb on + strand at 178.872 kb on - strand at 178.961 kb on + strand, within GFF1408 at 179.006 kb on + strand, within GFF1408 at 179.007 kb on - strand, within GFF1408 at 179.113 kb on + strand, within GFF1408 at 179.114 kb on - strand, within GFF1408 at 179.251 kb on + strand, within GFF1408 at 179.251 kb on + strand, within GFF1408 at 179.251 kb on + strand, within GFF1408 at 179.252 kb on - strand, within GFF1408 at 179.252 kb on - strand, within GFF1408 at 179.252 kb on - strand, within GFF1408 at 179.252 kb on - strand, within GFF1408 at 179.299 kb on + strand, within GFF1408 at 179.299 kb on + strand, within GFF1408 at 179.299 kb on + strand, within GFF1408 at 179.299 kb on + strand, within GFF1408 at 179.299 kb on + strand, within GFF1408 at 179.300 kb on - strand, within GFF1408 at 179.300 kb on - strand, within GFF1408 at 179.350 kb on + strand, within GFF1408 at 179.350 kb on + strand, within GFF1408 at 179.350 kb on + strand, within GFF1408 at 179.350 kb on + strand, within GFF1408 at 179.350 kb on + strand, within GFF1408 at 179.350 kb on + strand, within GFF1408 at 179.351 kb on - strand, within GFF1408 at 179.351 kb on - strand, within GFF1408 at 179.351 kb on - strand, within GFF1408 at 179.351 kb on - strand, within GFF1408 at 179.701 kb on + strand at 179.715 kb on - strand at 179.715 kb on - strand at 179.716 kb on + strand at 179.717 kb on - strand at 179.727 kb on - strand at 179.832 kb on + strand at 179.837 kb on + strand at 179.838 kb on - strand at 179.932 kb on + strand, within GFF1409 at 179.932 kb on + strand, within GFF1409 at 179.932 kb on + strand, within GFF1409 at 179.932 kb on + strand, within GFF1409 at 179.961 kb on - strand, within GFF1409 at 180.196 kb on + strand, within GFF1409 at 180.196 kb on + strand, within GFF1409 at 180.196 kb on + strand, within GFF1409 at 180.197 kb on - strand, within GFF1409 at 180.197 kb on - strand, within GFF1409 at 180.197 kb on - strand, within GFF1409 at 180.197 kb on - strand, within GFF1409 at 180.197 kb on - strand, within GFF1409 at 180.197 kb on - strand, within GFF1409 at 180.222 kb on + strand, within GFF1409 at 180.222 kb on + strand, within GFF1409 at 180.222 kb on + strand, within GFF1409 at 180.551 kb on - strand at 180.551 kb on - strand at 180.551 kb on - strand at 180.604 kb on + strand at 180.605 kb on - strand at 180.657 kb on + strand at 180.657 kb on + strand at 180.657 kb on + strand at 180.657 kb on + strand at 180.658 kb on - strand at 180.726 kb on - strand at 180.970 kb on + strand, within GFF1410 at 180.970 kb on + strand, within GFF1410 at 180.970 kb on + strand, within GFF1410 at 180.970 kb on + strand, within GFF1410 at 180.970 kb on + strand, within GFF1410 at 180.971 kb on - strand, within GFF1410 at 180.971 kb on - strand, within GFF1410
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 178,823 + -1.5 178,823 + -0.5 178,824 - -0.1 178,824 - -1.7 178,824 - -0.5 178,871 + +1.1 178,872 - -0.7 178,961 + GFF1408 0.11 -0.3 179,006 + GFF1408 0.17 +0.2 179,007 - GFF1408 0.17 -0.3 179,113 + GFF1408 0.31 -0.3 179,114 - GFF1408 0.31 -0.3 179,251 + GFF1408 0.49 -0.7 179,251 + GFF1408 0.49 +1.5 179,251 + GFF1408 0.49 +1.0 179,252 - GFF1408 0.49 -1.4 179,252 - GFF1408 0.49 -0.5 179,252 - GFF1408 0.49 -0.3 179,252 - GFF1408 0.49 -1.4 179,299 + GFF1408 0.56 -0.6 179,299 + GFF1408 0.56 +0.5 179,299 + GFF1408 0.56 -0.9 179,299 + GFF1408 0.56 +0.2 179,299 + GFF1408 0.56 -2.1 179,300 - GFF1408 0.56 +1.2 179,300 - GFF1408 0.56 -0.5 179,350 + GFF1408 0.62 +0.0 179,350 + GFF1408 0.62 -0.5 179,350 + GFF1408 0.62 -0.2 179,350 + GFF1408 0.62 -0.6 179,350 + GFF1408 0.62 -1.3 179,350 + GFF1408 0.62 -0.0 179,351 - GFF1408 0.63 +0.5 179,351 - GFF1408 0.63 +0.5 179,351 - GFF1408 0.63 -0.1 179,351 - GFF1408 0.63 -0.7 179,701 + -0.7 179,715 - -1.0 179,715 - +0.5 179,716 + -1.2 179,717 - -1.5 179,727 - -0.3 179,832 + -0.6 179,837 + -1.5 179,838 - -0.3 179,932 + GFF1409 0.19 -0.6 179,932 + GFF1409 0.19 -0.7 179,932 + GFF1409 0.19 -0.1 179,932 + GFF1409 0.19 +0.5 179,961 - GFF1409 0.23 +0.1 180,196 + GFF1409 0.53 -0.6 180,196 + GFF1409 0.53 -1.3 180,196 + GFF1409 0.53 +0.7 180,197 - GFF1409 0.53 +0.8 180,197 - GFF1409 0.53 +0.5 180,197 - GFF1409 0.53 -1.0 180,197 - GFF1409 0.53 -0.7 180,197 - GFF1409 0.53 +0.3 180,197 - GFF1409 0.53 +1.8 180,222 + GFF1409 0.56 +0.1 180,222 + GFF1409 0.56 -0.5 180,222 + GFF1409 0.56 +1.7 180,551 - -0.9 180,551 - -1.0 180,551 - -1.0 180,604 + +0.9 180,605 - -0.6 180,657 + -1.7 180,657 + +1.0 180,657 + -1.0 180,657 + -0.1 180,658 - +0.1 180,726 - -0.3 180,970 + GFF1410 0.38 -0.3 180,970 + GFF1410 0.38 -0.3 180,970 + GFF1410 0.38 -1.0 180,970 + GFF1410 0.38 -0.9 180,970 + GFF1410 0.38 +0.6 180,971 - GFF1410 0.38 +0.5 180,971 - GFF1410 0.38 -0.0
Or see this region's nucleotide sequence