Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_08085

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_08080 and HUW76_08085 are separated by 315 nucleotidesHUW76_08085 and HUW76_08090 are separated by 61 nucleotides HUW76_08080: HUW76_08080 - peptidyl-prolyl cis-trans isomerase, at 1,681,025 to 1,681,708 _08080 HUW76_08085: HUW76_08085 - formate C-acetyltransferase, at 1,682,024 to 1,684,255 _08085 HUW76_08090: HUW76_08090 - pyruvate formate lyase-activating protein, at 1,684,317 to 1,685,060 _08090 Position (kb) 1682 1683 1684 1685Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1681.042 kb on + strandat 1681.087 kb on + strandat 1681.095 kb on - strand, within HUW76_08080at 1681.095 kb on - strand, within HUW76_08080at 1681.095 kb on - strand, within HUW76_08080at 1681.138 kb on - strand, within HUW76_08080at 1681.138 kb on - strand, within HUW76_08080at 1681.138 kb on - strand, within HUW76_08080at 1681.359 kb on + strand, within HUW76_08080at 1681.359 kb on - strand, within HUW76_08080at 1681.359 kb on - strand, within HUW76_08080at 1681.451 kb on - strand, within HUW76_08080at 1681.451 kb on - strand, within HUW76_08080at 1681.456 kb on - strand, within HUW76_08080at 1681.532 kb on + strand, within HUW76_08080at 1681.573 kb on - strand, within HUW76_08080at 1681.573 kb on - strand, within HUW76_08080at 1681.573 kb on - strand, within HUW76_08080at 1681.587 kb on + strand, within HUW76_08080at 1681.587 kb on + strand, within HUW76_08080at 1681.710 kb on - strandat 1681.752 kb on - strandat 1681.897 kb on + strandat 1682.039 kb on - strandat 1682.105 kb on + strandat 1682.105 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.107 kb on + strandat 1682.114 kb on + strandat 1682.115 kb on - strandat 1682.317 kb on - strand, within HUW76_08085at 1682.390 kb on - strand, within HUW76_08085at 1682.433 kb on + strand, within HUW76_08085at 1682.433 kb on + strand, within HUW76_08085at 1682.438 kb on + strand, within HUW76_08085at 1682.441 kb on - strand, within HUW76_08085at 1682.441 kb on - strand, within HUW76_08085at 1682.487 kb on - strand, within HUW76_08085at 1682.493 kb on + strand, within HUW76_08085at 1682.493 kb on + strand, within HUW76_08085at 1682.539 kb on + strand, within HUW76_08085at 1682.547 kb on + strand, within HUW76_08085at 1682.547 kb on + strand, within HUW76_08085at 1682.602 kb on - strand, within HUW76_08085at 1682.602 kb on - strand, within HUW76_08085at 1682.648 kb on + strand, within HUW76_08085at 1682.648 kb on + strand, within HUW76_08085at 1682.681 kb on - strand, within HUW76_08085at 1682.839 kb on + strand, within HUW76_08085at 1682.946 kb on + strand, within HUW76_08085at 1682.965 kb on + strand, within HUW76_08085at 1682.975 kb on + strand, within HUW76_08085at 1682.975 kb on + strand, within HUW76_08085at 1683.000 kb on + strand, within HUW76_08085at 1683.000 kb on + strand, within HUW76_08085at 1683.055 kb on + strand, within HUW76_08085at 1683.055 kb on + strand, within HUW76_08085at 1683.055 kb on + strand, within HUW76_08085at 1683.063 kb on - strand, within HUW76_08085at 1683.092 kb on - strand, within HUW76_08085at 1683.104 kb on + strand, within HUW76_08085at 1683.104 kb on + strand, within HUW76_08085at 1683.104 kb on + strand, within HUW76_08085at 1683.104 kb on + strand, within HUW76_08085at 1683.112 kb on - strand, within HUW76_08085at 1683.112 kb on - strand, within HUW76_08085at 1683.121 kb on - strand, within HUW76_08085at 1683.147 kb on + strand, within HUW76_08085at 1683.147 kb on + strand, within HUW76_08085at 1683.163 kb on + strand, within HUW76_08085at 1683.163 kb on + strand, within HUW76_08085at 1683.202 kb on - strand, within HUW76_08085at 1683.223 kb on + strand, within HUW76_08085at 1683.223 kb on - strand, within HUW76_08085at 1683.231 kb on - strand, within HUW76_08085at 1683.232 kb on + strand, within HUW76_08085at 1683.232 kb on + strand, within HUW76_08085at 1683.233 kb on - strand, within HUW76_08085at 1683.240 kb on - strand, within HUW76_08085at 1683.240 kb on - strand, within HUW76_08085at 1683.256 kb on - strand, within HUW76_08085at 1683.256 kb on - strand, within HUW76_08085at 1683.305 kb on + strand, within HUW76_08085at 1683.305 kb on + strand, within HUW76_08085at 1683.305 kb on + strand, within HUW76_08085at 1683.310 kb on + strand, within HUW76_08085at 1683.310 kb on + strand, within HUW76_08085at 1683.312 kb on - strand, within HUW76_08085at 1683.312 kb on - strand, within HUW76_08085at 1683.318 kb on - strand, within HUW76_08085at 1683.355 kb on + strand, within HUW76_08085at 1683.355 kb on + strand, within HUW76_08085at 1683.382 kb on + strand, within HUW76_08085at 1683.492 kb on - strand, within HUW76_08085at 1683.504 kb on + strand, within HUW76_08085at 1683.524 kb on + strand, within HUW76_08085at 1683.524 kb on + strand, within HUW76_08085at 1683.524 kb on + strand, within HUW76_08085at 1683.524 kb on + strand, within HUW76_08085at 1683.524 kb on + strand, within HUW76_08085at 1683.524 kb on + strand, within HUW76_08085at 1683.532 kb on - strand, within HUW76_08085at 1683.532 kb on - strand, within HUW76_08085at 1683.532 kb on - strand, within HUW76_08085at 1683.532 kb on - strand, within HUW76_08085at 1683.532 kb on - strand, within HUW76_08085at 1683.532 kb on - strand, within HUW76_08085at 1683.532 kb on - strand, within HUW76_08085at 1683.547 kb on - strand, within HUW76_08085at 1683.549 kb on + strand, within HUW76_08085at 1683.549 kb on + strand, within HUW76_08085at 1683.549 kb on + strand, within HUW76_08085at 1683.549 kb on + strand, within HUW76_08085at 1683.549 kb on + strand, within HUW76_08085at 1683.700 kb on + strand, within HUW76_08085at 1683.700 kb on + strand, within HUW76_08085at 1683.700 kb on + strand, within HUW76_08085at 1683.700 kb on + strand, within HUW76_08085at 1683.700 kb on + strand, within HUW76_08085at 1683.700 kb on + strand, within HUW76_08085at 1683.700 kb on + strand, within HUW76_08085at 1683.700 kb on + strand, within HUW76_08085at 1683.751 kb on + strand, within HUW76_08085at 1683.751 kb on + strand, within HUW76_08085at 1683.776 kb on - strand, within HUW76_08085at 1683.778 kb on + strand, within HUW76_08085at 1683.778 kb on + strand, within HUW76_08085at 1683.778 kb on + strand, within HUW76_08085at 1683.785 kb on - strand, within HUW76_08085at 1683.785 kb on - strand, within HUW76_08085at 1683.881 kb on - strand, within HUW76_08085at 1683.882 kb on - strand, within HUW76_08085at 1683.885 kb on + strand, within HUW76_08085at 1683.912 kb on - strand, within HUW76_08085at 1683.926 kb on - strand, within HUW76_08085at 1683.947 kb on + strand, within HUW76_08085at 1684.052 kb on + strandat 1684.156 kb on + strandat 1684.324 kb on - strandat 1684.324 kb on - strandat 1684.325 kb on - strandat 1684.325 kb on - strandat 1684.389 kb on + strandat 1684.394 kb on + strand, within HUW76_08090at 1684.394 kb on + strand, within HUW76_08090at 1684.402 kb on - strand, within HUW76_08090at 1684.468 kb on + strand, within HUW76_08090at 1684.476 kb on - strand, within HUW76_08090at 1684.476 kb on - strand, within HUW76_08090at 1684.476 kb on - strand, within HUW76_08090at 1684.476 kb on - strand, within HUW76_08090at 1684.476 kb on - strand, within HUW76_08090at 1684.478 kb on + strand, within HUW76_08090at 1684.500 kb on + strand, within HUW76_08090at 1684.518 kb on + strand, within HUW76_08090at 1684.518 kb on + strand, within HUW76_08090at 1684.544 kb on - strand, within HUW76_08090at 1684.545 kb on - strand, within HUW76_08090at 1684.545 kb on - strand, within HUW76_08090at 1684.604 kb on + strand, within HUW76_08090at 1684.619 kb on - strand, within HUW76_08090at 1684.619 kb on - strand, within HUW76_08090at 1684.619 kb on - strand, within HUW76_08090at 1684.619 kb on - strand, within HUW76_08090at 1684.619 kb on - strand, within HUW76_08090at 1684.619 kb on - strand, within HUW76_08090at 1684.798 kb on + strand, within HUW76_08090at 1684.798 kb on + strand, within HUW76_08090at 1684.804 kb on + strand, within HUW76_08090at 1684.806 kb on - strand, within HUW76_08090at 1684.822 kb on - strand, within HUW76_08090at 1684.845 kb on - strand, within HUW76_08090at 1684.845 kb on - strand, within HUW76_08090at 1684.850 kb on + strand, within HUW76_08090at 1684.850 kb on + strand, within HUW76_08090at 1684.960 kb on - strand, within HUW76_08090at 1684.963 kb on + strand, within HUW76_08090at 1684.963 kb on + strand, within HUW76_08090at 1685.026 kb on - strandat 1685.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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1,681,042 + -0.7
1,681,087 + +0.3
1,681,095 - HUW76_08080 0.10 -0.7
1,681,095 - HUW76_08080 0.10 +0.2
1,681,095 - HUW76_08080 0.10 -0.6
1,681,138 - HUW76_08080 0.17 +0.7
1,681,138 - HUW76_08080 0.17 -0.6
1,681,138 - HUW76_08080 0.17 -0.3
1,681,359 + HUW76_08080 0.49 +0.7
1,681,359 - HUW76_08080 0.49 -0.3
1,681,359 - HUW76_08080 0.49 -1.1
1,681,451 - HUW76_08080 0.62 -0.0
1,681,451 - HUW76_08080 0.62 +0.6
1,681,456 - HUW76_08080 0.63 -0.2
1,681,532 + HUW76_08080 0.74 +1.6
1,681,573 - HUW76_08080 0.80 -0.3
1,681,573 - HUW76_08080 0.80 -0.2
1,681,573 - HUW76_08080 0.80 -0.0
1,681,587 + HUW76_08080 0.82 +0.1
1,681,587 + HUW76_08080 0.82 -0.1
1,681,710 - -1.1
1,681,752 - +0.1
1,681,897 + -0.2
1,682,039 - +0.6
1,682,105 + -0.7
1,682,105 + +0.2
1,682,107 + -0.5
1,682,107 + -0.5
1,682,107 + -0.5
1,682,107 + -1.3
1,682,107 + -0.4
1,682,107 + -0.4
1,682,107 + -0.2
1,682,107 + -0.9
1,682,107 + -0.5
1,682,107 + -0.6
1,682,107 + -1.0
1,682,107 + -0.6
1,682,107 + -0.6
1,682,107 + -0.7
1,682,107 + -0.6
1,682,114 + -0.5
1,682,115 - +1.0
1,682,317 - HUW76_08085 0.13 +3.3
1,682,390 - HUW76_08085 0.16 +2.2
1,682,433 + HUW76_08085 0.18 -1.2
1,682,433 + HUW76_08085 0.18 -0.7
1,682,438 + HUW76_08085 0.19 +0.1
1,682,441 - HUW76_08085 0.19 -0.0
1,682,441 - HUW76_08085 0.19 +1.6
1,682,487 - HUW76_08085 0.21 -1.7
1,682,493 + HUW76_08085 0.21 -0.9
1,682,493 + HUW76_08085 0.21 -1.1
1,682,539 + HUW76_08085 0.23 -0.4
1,682,547 + HUW76_08085 0.23 +0.5
1,682,547 + HUW76_08085 0.23 -0.5
1,682,602 - HUW76_08085 0.26 +1.3
1,682,602 - HUW76_08085 0.26 +1.5
1,682,648 + HUW76_08085 0.28 -0.2
1,682,648 + HUW76_08085 0.28 -0.7
1,682,681 - HUW76_08085 0.29 +2.3
1,682,839 + HUW76_08085 0.37 -0.3
1,682,946 + HUW76_08085 0.41 -1.1
1,682,965 + HUW76_08085 0.42 -1.1
1,682,975 + HUW76_08085 0.43 -0.4
1,682,975 + HUW76_08085 0.43 -2.2
1,683,000 + HUW76_08085 0.44 -0.6
1,683,000 + HUW76_08085 0.44 -1.0
1,683,055 + HUW76_08085 0.46 -1.6
1,683,055 + HUW76_08085 0.46 -0.6
1,683,055 + HUW76_08085 0.46 -1.1
1,683,063 - HUW76_08085 0.47 -0.2
1,683,092 - HUW76_08085 0.48 -0.0
1,683,104 + HUW76_08085 0.48 -0.9
1,683,104 + HUW76_08085 0.48 +0.0
1,683,104 + HUW76_08085 0.48 -0.6
1,683,104 + HUW76_08085 0.48 -1.7
1,683,112 - HUW76_08085 0.49 +1.3
1,683,112 - HUW76_08085 0.49 +1.6
1,683,121 - HUW76_08085 0.49 -1.8
1,683,147 + HUW76_08085 0.50 -1.1
1,683,147 + HUW76_08085 0.50 -0.4
1,683,163 + HUW76_08085 0.51 -0.6
1,683,163 + HUW76_08085 0.51 -1.1
1,683,202 - HUW76_08085 0.53 -0.5
1,683,223 + HUW76_08085 0.54 -0.5
1,683,223 - HUW76_08085 0.54 +2.0
1,683,231 - HUW76_08085 0.54 -1.8
1,683,232 + HUW76_08085 0.54 -0.5
1,683,232 + HUW76_08085 0.54 -1.7
1,683,233 - HUW76_08085 0.54 +1.7
1,683,240 - HUW76_08085 0.54 -0.3
1,683,240 - HUW76_08085 0.54 +2.0
1,683,256 - HUW76_08085 0.55 +0.7
1,683,256 - HUW76_08085 0.55 +0.4
1,683,305 + HUW76_08085 0.57 -1.1
1,683,305 + HUW76_08085 0.57 -2.0
1,683,305 + HUW76_08085 0.57 -0.3
1,683,310 + HUW76_08085 0.58 -0.6
1,683,310 + HUW76_08085 0.58 -1.1
1,683,312 - HUW76_08085 0.58 +0.6
1,683,312 - HUW76_08085 0.58 -0.6
1,683,318 - HUW76_08085 0.58 +0.9
1,683,355 + HUW76_08085 0.60 -0.7
1,683,355 + HUW76_08085 0.60 -0.3
1,683,382 + HUW76_08085 0.61 -1.0
1,683,492 - HUW76_08085 0.66 -0.3
1,683,504 + HUW76_08085 0.66 -0.6
1,683,524 + HUW76_08085 0.67 -1.0
1,683,524 + HUW76_08085 0.67 +1.8
1,683,524 + HUW76_08085 0.67 +1.7
1,683,524 + HUW76_08085 0.67 -0.8
1,683,524 + HUW76_08085 0.67 +0.3
1,683,524 + HUW76_08085 0.67 -1.3
1,683,532 - HUW76_08085 0.68 +1.6
1,683,532 - HUW76_08085 0.68 +0.1
1,683,532 - HUW76_08085 0.68 -0.0
1,683,532 - HUW76_08085 0.68 +2.6
1,683,532 - HUW76_08085 0.68 +0.6
1,683,532 - HUW76_08085 0.68 -0.6
1,683,532 - HUW76_08085 0.68 +1.0
1,683,547 - HUW76_08085 0.68 +1.6
1,683,549 + HUW76_08085 0.68 -0.9
1,683,549 + HUW76_08085 0.68 -0.7
1,683,549 + HUW76_08085 0.68 -0.4
1,683,549 + HUW76_08085 0.68 -0.6
1,683,549 + HUW76_08085 0.68 -0.0
1,683,700 + HUW76_08085 0.75 -1.0
1,683,700 + HUW76_08085 0.75 -0.8
1,683,700 + HUW76_08085 0.75 -0.4
1,683,700 + HUW76_08085 0.75 -1.0
1,683,700 + HUW76_08085 0.75 -0.5
1,683,700 + HUW76_08085 0.75 -0.3
1,683,700 + HUW76_08085 0.75 -0.5
1,683,700 + HUW76_08085 0.75 -1.5
1,683,751 + HUW76_08085 0.77 -0.2
1,683,751 + HUW76_08085 0.77 -1.4
1,683,776 - HUW76_08085 0.78 +2.2
1,683,778 + HUW76_08085 0.79 +0.6
1,683,778 + HUW76_08085 0.79 -0.4
1,683,778 + HUW76_08085 0.79 +0.3
1,683,785 - HUW76_08085 0.79 +1.3
1,683,785 - HUW76_08085 0.79 +1.4
1,683,881 - HUW76_08085 0.83 +1.3
1,683,882 - HUW76_08085 0.83 -0.1
1,683,885 + HUW76_08085 0.83 -1.3
1,683,912 - HUW76_08085 0.85 -0.1
1,683,926 - HUW76_08085 0.85 -1.3
1,683,947 + HUW76_08085 0.86 -0.3
1,684,052 + -0.3
1,684,156 + -0.8
1,684,324 - -0.3
1,684,324 - -0.2
1,684,325 - +0.8
1,684,325 - -0.2
1,684,389 + -0.4
1,684,394 + HUW76_08090 0.10 -0.3
1,684,394 + HUW76_08090 0.10 -2.0
1,684,402 - HUW76_08090 0.11 -0.4
1,684,468 + HUW76_08090 0.20 +0.9
1,684,476 - HUW76_08090 0.21 +0.9
1,684,476 - HUW76_08090 0.21 -0.0
1,684,476 - HUW76_08090 0.21 -0.4
1,684,476 - HUW76_08090 0.21 -0.0
1,684,476 - HUW76_08090 0.21 +0.2
1,684,478 + HUW76_08090 0.22 -0.8
1,684,500 + HUW76_08090 0.25 -0.7
1,684,518 + HUW76_08090 0.27 -0.4
1,684,518 + HUW76_08090 0.27 -0.8
1,684,544 - HUW76_08090 0.31 -0.2
1,684,545 - HUW76_08090 0.31 -0.7
1,684,545 - HUW76_08090 0.31 +0.1
1,684,604 + HUW76_08090 0.39 -0.6
1,684,619 - HUW76_08090 0.41 +0.8
1,684,619 - HUW76_08090 0.41 +0.4
1,684,619 - HUW76_08090 0.41 +0.4
1,684,619 - HUW76_08090 0.41 +0.1
1,684,619 - HUW76_08090 0.41 -0.3
1,684,619 - HUW76_08090 0.41 +0.7
1,684,798 + HUW76_08090 0.65 -0.6
1,684,798 + HUW76_08090 0.65 -1.1
1,684,804 + HUW76_08090 0.65 -0.4
1,684,806 - HUW76_08090 0.66 +0.5
1,684,822 - HUW76_08090 0.68 -1.1
1,684,845 - HUW76_08090 0.71 +0.5
1,684,845 - HUW76_08090 0.71 -0.6
1,684,850 + HUW76_08090 0.72 -1.1
1,684,850 + HUW76_08090 0.72 -0.8
1,684,960 - HUW76_08090 0.86 -1.3
1,684,963 + HUW76_08090 0.87 +0.4
1,684,963 + HUW76_08090 0.87 -0.4
1,685,026 - -1.7
1,685,026 - +0.7

Or see this region's nucleotide sequence