Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_08045

Experiment: Time0_primer_test

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_primer_test
1,673,144	-				-0.8
1,673,160	+				-0.4
1,673,168	-				-0.2
1,673,168	-				-0.2
1,673,168	-				+0.1
1,673,315	+				-0.1
1,673,333	-				-0.5
1,673,333	-				+0.5
1,673,333	-				-0.7
1,673,333	-				-0.2
1,673,333	-				+0.8
1,673,333	-				-0.1
1,673,333	-				-0.3
1,673,333	-				-0.7
1,673,333	-				+0.1
1,673,356	+				-0.5
1,673,373	+				-0.4
1,673,381	-				-0.5
1,673,399	-				-0.4
1,673,399	-				-0.7
1,673,426	-		HUW76_08040	0.11	-0.6
1,673,446	+		HUW76_08040	0.14	+0.5
1,673,446	+		HUW76_08040	0.14	+0.9
1,673,523	-		HUW76_08040	0.25	-0.4
1,673,602	+		HUW76_08040	0.36	+0.4
1,673,602	+		HUW76_08040	0.36	+0.7
1,673,613	+		HUW76_08040	0.38	+0.1
1,673,613	+		HUW76_08040	0.38	+0.3
1,673,613	+		HUW76_08040	0.38	+0.2
1,673,621	-		HUW76_08040	0.39	-0.3
1,673,621	-		HUW76_08040	0.39	-0.7
1,673,621	-		HUW76_08040	0.39	-0.1
1,673,680	-		HUW76_08040	0.47	-1.0
1,673,690	-		HUW76_08040	0.49	-0.4
1,673,759	-		HUW76_08040	0.59	+2.7
1,673,792	+		HUW76_08040	0.64	+0.4
1,673,792	+		HUW76_08040	0.64	+0.5
1,673,792	+		HUW76_08040	0.64	+1.4
1,673,802	-		HUW76_08040	0.65	-0.0
1,673,802	-		HUW76_08040	0.65	-0.7
1,673,875	-		HUW76_08040	0.75	-0.6
1,673,875	-		HUW76_08040	0.75	-0.5
1,673,875	-		HUW76_08040	0.75	-0.2
1,673,898	+		HUW76_08040	0.79	+1.8
1,673,898	+		HUW76_08040	0.79	+0.7
1,673,923	+		HUW76_08040	0.82	+0.5
1,673,923	+		HUW76_08040	0.82	+1.1
1,673,923	+		HUW76_08040	0.82	+0.9
1,673,923	+		HUW76_08040	0.82	+1.2
1,673,931	-		HUW76_08040	0.83	-0.2
1,673,931	-		HUW76_08040	0.83	-0.5
1,673,931	-		HUW76_08040	0.83	-0.3
1,673,931	-		HUW76_08040	0.83	-1.2
1,673,931	-		HUW76_08040	0.83	-0.3
1,673,931	-		HUW76_08040	0.83	-0.6
1,673,931	-		HUW76_08040	0.83	-0.3
1,673,931	-		HUW76_08040	0.83	-0.1
1,673,931	-		HUW76_08040	0.83	-0.2
1,673,944	+		HUW76_08040	0.85	+0.8
1,673,952	-		HUW76_08040	0.86	-0.6
1,673,952	-		HUW76_08040	0.86	+0.0
1,673,952	-		HUW76_08040	0.86	-0.5
1,673,952	-		HUW76_08040	0.86	-0.8
1,673,952	-		HUW76_08040	0.86	-0.6
1,673,997	-				-0.2
1,673,997	-				-1.1
1,674,031	-				+0.7
1,674,047	+				+0.5
1,674,061	-				-0.6
1,674,061	-				-0.7
1,674,070	+				-0.2
1,674,070	+				+0.5
1,674,070	+				+0.5
1,674,070	+				+0.5
1,674,070	+				+1.0
1,674,070	+				+1.1
1,674,070	+				-0.3
1,674,070	+				+0.7
1,674,070	+				+0.7
1,674,070	+				+0.9
1,674,070	+				+0.1
1,674,070	+				+0.7
1,674,070	+				+1.0
1,674,070	+				+0.6
1,674,070	+				-0.3
1,674,070	+				+0.9
1,674,078	-				-0.9
1,674,078	-				-0.5
1,674,078	-				-0.0
1,674,078	-				-0.2
1,674,078	-				-0.1
1,674,078	-				-0.7
1,674,078	-				-0.2
1,674,078	-				-0.6
1,674,078	-				+0.0
1,674,078	-				+0.2
1,674,078	-				-0.5
1,674,078	-				-0.2
1,674,078	-				+0.0
1,674,078	-				-0.1
1,674,078	-				-0.1
1,674,078	-				-0.2
1,674,078	-				+0.2
1,674,078	-				-0.3
1,674,078	-				-0.4
1,674,078	-				-0.5
1,674,078	-				-0.6
1,674,078	-				+0.5
1,674,078	-				-0.5
1,674,080	+				+0.2
1,674,080	-				-0.6
1,674,080	-				-0.5
1,674,082	+				+1.4
1,674,082	+				+0.8
1,674,082	+				+2.0
1,674,082	+				+0.3
1,674,082	+				+0.6
1,674,083	-				-1.7
1,674,083	-				-0.6
1,674,088	-				-0.6
1,674,090	-				-0.4
1,674,090	-				-1.4
1,674,111	+				+0.7
1,674,111	+				+0.1
1,674,119	-				-0.5
1,674,119	-				+0.1
1,674,171	-				-0.5
1,674,223	+		HUW76_08045	0.14	+1.7
1,674,223	+		HUW76_08045	0.14	+0.8
1,674,231	-		HUW76_08045	0.15	-0.0
1,674,266	+		HUW76_08045	0.19	+0.8
1,674,445	-		HUW76_08045	0.39	+0.1
1,674,445	-		HUW76_08045	0.39	-0.1
1,674,460	-		HUW76_08045	0.40	+1.9
1,674,460	-		HUW76_08045	0.40	+0.4
1,674,467	+		HUW76_08045	0.41	+1.5
1,674,475	-		HUW76_08045	0.42	-0.2
1,674,481	+		HUW76_08045	0.43	-0.8
1,674,493	+		HUW76_08045	0.44	+0.9
1,674,493	+		HUW76_08045	0.44	+1.1
1,674,493	+		HUW76_08045	0.44	+0.4
1,674,493	+		HUW76_08045	0.44	+1.5
1,674,501	-		HUW76_08045	0.45	+0.6
1,674,501	-		HUW76_08045	0.45	-0.2
1,674,501	-		HUW76_08045	0.45	+0.7
1,674,501	-		HUW76_08045	0.45	+1.6
1,674,501	-		HUW76_08045	0.45	+0.8
1,674,522	-		HUW76_08045	0.47	+0.7
1,674,625	-		HUW76_08045	0.59	+0.6
1,674,697	+		HUW76_08045	0.67	+1.1
1,674,697	+		HUW76_08045	0.67	+1.2
1,674,700	-		HUW76_08045	0.67	+1.5
1,674,705	-		HUW76_08045	0.68	+1.0
1,674,707	+		HUW76_08045	0.68	-0.2
1,674,707	+		HUW76_08045	0.68	-1.3
1,674,744	-		HUW76_08045	0.72	+0.7
1,674,766	+		HUW76_08045	0.74	+0.7
1,674,766	+		HUW76_08045	0.74	+0.1
1,674,766	+		HUW76_08045	0.74	+0.8
1,674,787	-		HUW76_08045	0.77	+2.0
1,674,787	-		HUW76_08045	0.77	+0.6
1,674,790	-		HUW76_08045	0.77	+2.0
1,674,804	+		HUW76_08045	0.79	+1.0
1,674,804	+		HUW76_08045	0.79	+0.6
1,674,804	+		HUW76_08045	0.79	+0.6
1,674,812	-		HUW76_08045	0.80	+1.6
1,674,817	-		HUW76_08045	0.80	+0.1
1,674,817	-		HUW76_08045	0.80	+0.5
1,674,822	-		HUW76_08045	0.81	-0.2
1,674,955	+				+1.0
1,674,955	+				+1.7
1,674,965	+				+1.5
1,674,965	+				+1.8
1,674,965	+				+1.1
1,674,965	+				-0.0
1,674,973	-				+3.2
1,674,973	-				-0.1
1,674,973	-				-0.2
1,674,973	-				+1.4
1,674,973	-				+0.3
1,674,973	-				+0.2
1,674,973	-				+0.3
1,674,983	-				-0.2
1,674,983	-				+0.5
1,674,983	-				+0.5
1,674,983	-				-0.1
1,675,315	+		HUW76_08050	0.42	+2.2
1,675,322	-		HUW76_08050	0.43	-0.7
1,675,359	-		HUW76_08050	0.48	+0.1
1,675,359	-		HUW76_08050	0.48	+0.5
1,675,425	+		HUW76_08050	0.56	+0.2
1,675,530	+		HUW76_08050	0.70	+0.4
1,675,622	+		HUW76_08050	0.82	+0.4
1,675,687	+				+0.3
1,675,687	+				+0.9
1,675,687	+				+2.1
1,675,687	+				-0.0
1,675,690	+				+1.3
1,675,690	+				+0.8
1,675,690	+				+1.8
1,675,698	-				-0.2
1,675,698	-				-0.4
1,675,698	-				-0.3
1,675,700	-				-0.7
1,675,700	-				-0.1
1,675,788	+				+0.9
1,675,788	+				+1.0
1,675,788	+				+0.2
1,675,788	+				+0.3
1,675,788	+				+0.1
1,675,788	+				+0.4
1,675,788	+				+0.8
1,675,788	+				+0.4
1,675,788	+				-0.0
1,675,788	+				+0.3
1,675,788	+				+0.4
1,675,788	+				+0.5
1,675,788	+				+0.5
1,675,788	+				+0.8
1,675,788	+				+0.9
1,675,788	+				+0.2
1,675,788	+				+0.3
1,675,796	-				-0.9
1,675,796	-				-1.1
1,675,796	-				+0.0
1,675,796	-				+0.4
1,675,796	-				-0.8
1,675,796	-				-0.4
1,675,796	-				-0.0
1,675,832	-				+0.1
1,675,930	+		HUW76_08055	0.10	+0.2
1,675,935	+		HUW76_08055	0.11	-0.1
1,675,935	+		HUW76_08055	0.11	+0.2
1,675,935	+		HUW76_08055	0.11	+0.0
1,675,943	-		HUW76_08055	0.11	-0.6
1,675,943	-		HUW76_08055	0.11	-0.6
1,675,943	-		HUW76_08055	0.11	-0.0
1,675,943	-		HUW76_08055	0.11	-1.0
1,675,943	-		HUW76_08055	0.11	-0.4
1,675,943	-		HUW76_08055	0.11	-0.2
1,675,950	+		HUW76_08055	0.11	+0.6
1,675,950	-		HUW76_08055	0.11	-0.0