Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_07560

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_07550 and HUW76_07555 are separated by 25 nucleotidesHUW76_07555 and HUW76_07560 are separated by 293 nucleotidesHUW76_07560 and HUW76_07565 are separated by 26 nucleotides HUW76_07550: HUW76_07550 - N-acetylmuramoyl-L-alanine amidase, at 1,579,690 to 1,580,487 _07550 HUW76_07555: HUW76_07555 - endo alpha-1,4 polygalactosaminidase, at 1,580,513 to 1,580,806 _07555 HUW76_07560: HUW76_07560 - TonB-dependent receptor, at 1,581,100 to 1,583,349 _07560 HUW76_07565: HUW76_07565 - autotransporter domain-containing protein, at 1,583,376 to 1,587,974 _07565 Position (kb) 1581 1582 1583 1584Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1580.135 kb on + strand, within HUW76_07550at 1580.144 kb on - strand, within HUW76_07550at 1580.215 kb on + strand, within HUW76_07550at 1580.216 kb on + strand, within HUW76_07550at 1580.216 kb on + strand, within HUW76_07550at 1580.247 kb on + strand, within HUW76_07550at 1580.247 kb on + strand, within HUW76_07550at 1580.252 kb on + strand, within HUW76_07550at 1580.294 kb on - strand, within HUW76_07550at 1580.294 kb on - strand, within HUW76_07550at 1580.301 kb on - strand, within HUW76_07550at 1580.301 kb on - strand, within HUW76_07550at 1580.327 kb on + strand, within HUW76_07550at 1580.327 kb on + strand, within HUW76_07550at 1580.388 kb on + strand, within HUW76_07550at 1580.388 kb on + strand, within HUW76_07550at 1580.396 kb on - strand, within HUW76_07550at 1580.483 kb on + strandat 1580.490 kb on - strandat 1580.493 kb on + strandat 1580.496 kb on - strandat 1580.496 kb on - strandat 1580.573 kb on + strand, within HUW76_07555at 1580.588 kb on + strand, within HUW76_07555at 1580.718 kb on + strand, within HUW76_07555at 1580.734 kb on + strand, within HUW76_07555at 1580.734 kb on + strand, within HUW76_07555at 1580.734 kb on + strand, within HUW76_07555at 1580.734 kb on + strand, within HUW76_07555at 1580.734 kb on + strand, within HUW76_07555at 1580.734 kb on + strand, within HUW76_07555at 1580.734 kb on + strand, within HUW76_07555at 1580.734 kb on + strand, within HUW76_07555at 1580.742 kb on - strand, within HUW76_07555at 1580.742 kb on - strand, within HUW76_07555at 1580.742 kb on - strand, within HUW76_07555at 1580.742 kb on - strand, within HUW76_07555at 1580.742 kb on - strand, within HUW76_07555at 1580.742 kb on - strand, within HUW76_07555at 1580.742 kb on - strand, within HUW76_07555at 1580.865 kb on - strandat 1581.161 kb on + strandat 1581.161 kb on + strandat 1581.161 kb on + strandat 1581.161 kb on + strandat 1581.209 kb on + strandat 1581.209 kb on + strandat 1581.310 kb on - strandat 1581.315 kb on - strandat 1581.315 kb on - strandat 1581.316 kb on - strandat 1581.347 kb on + strand, within HUW76_07560at 1581.355 kb on - strand, within HUW76_07560at 1581.411 kb on - strand, within HUW76_07560at 1581.413 kb on + strand, within HUW76_07560at 1581.413 kb on + strand, within HUW76_07560at 1581.413 kb on + strand, within HUW76_07560at 1581.417 kb on + strand, within HUW76_07560at 1581.417 kb on + strand, within HUW76_07560at 1581.421 kb on - strand, within HUW76_07560at 1581.425 kb on - strand, within HUW76_07560at 1581.425 kb on - strand, within HUW76_07560at 1581.435 kb on - strand, within HUW76_07560at 1581.435 kb on - strand, within HUW76_07560at 1581.506 kb on + strand, within HUW76_07560at 1581.506 kb on + strand, within HUW76_07560at 1581.541 kb on + strand, within HUW76_07560at 1581.549 kb on - strand, within HUW76_07560at 1581.549 kb on - strand, within HUW76_07560at 1581.560 kb on + strand, within HUW76_07560at 1581.560 kb on + strand, within HUW76_07560at 1581.560 kb on + strand, within HUW76_07560at 1581.600 kb on + strand, within HUW76_07560at 1581.606 kb on - strand, within HUW76_07560at 1581.608 kb on - strand, within HUW76_07560at 1581.608 kb on - strand, within HUW76_07560at 1581.693 kb on - strand, within HUW76_07560at 1581.693 kb on - strand, within HUW76_07560at 1581.699 kb on + strand, within HUW76_07560at 1581.745 kb on + strand, within HUW76_07560at 1581.753 kb on - strand, within HUW76_07560at 1581.766 kb on - strand, within HUW76_07560at 1581.823 kb on + strand, within HUW76_07560at 1581.831 kb on - strand, within HUW76_07560at 1581.892 kb on + strand, within HUW76_07560at 1581.902 kb on - strand, within HUW76_07560at 1581.975 kb on + strand, within HUW76_07560at 1581.981 kb on - strand, within HUW76_07560at 1581.982 kb on + strand, within HUW76_07560at 1581.998 kb on + strand, within HUW76_07560at 1581.998 kb on + strand, within HUW76_07560at 1581.998 kb on + strand, within HUW76_07560at 1581.998 kb on + strand, within HUW76_07560at 1581.998 kb on + strand, within HUW76_07560at 1582.004 kb on - strand, within HUW76_07560at 1582.006 kb on - strand, within HUW76_07560at 1582.006 kb on - strand, within HUW76_07560at 1582.006 kb on - strand, within HUW76_07560at 1582.034 kb on + strand, within HUW76_07560at 1582.181 kb on + strand, within HUW76_07560at 1582.217 kb on + strand, within HUW76_07560at 1582.225 kb on - strand, within HUW76_07560at 1582.276 kb on + strand, within HUW76_07560at 1582.387 kb on + strand, within HUW76_07560at 1582.399 kb on + strand, within HUW76_07560at 1582.399 kb on + strand, within HUW76_07560at 1582.414 kb on - strand, within HUW76_07560at 1582.422 kb on + strand, within HUW76_07560at 1582.422 kb on + strand, within HUW76_07560at 1582.430 kb on - strand, within HUW76_07560at 1582.430 kb on - strand, within HUW76_07560at 1582.430 kb on - strand, within HUW76_07560at 1582.445 kb on + strand, within HUW76_07560at 1582.445 kb on + strand, within HUW76_07560at 1582.477 kb on - strand, within HUW76_07560at 1582.561 kb on + strand, within HUW76_07560at 1582.561 kb on + strand, within HUW76_07560at 1582.613 kb on - strand, within HUW76_07560at 1582.615 kb on + strand, within HUW76_07560at 1582.615 kb on + strand, within HUW76_07560at 1582.615 kb on + strand, within HUW76_07560at 1582.628 kb on + strand, within HUW76_07560at 1582.628 kb on + strand, within HUW76_07560at 1582.673 kb on + strand, within HUW76_07560at 1582.673 kb on + strand, within HUW76_07560at 1582.742 kb on + strand, within HUW76_07560at 1582.742 kb on + strand, within HUW76_07560at 1582.763 kb on - strand, within HUW76_07560at 1582.763 kb on - strand, within HUW76_07560at 1582.809 kb on - strand, within HUW76_07560at 1582.812 kb on - strand, within HUW76_07560at 1582.812 kb on - strand, within HUW76_07560at 1582.813 kb on + strand, within HUW76_07560at 1582.826 kb on - strand, within HUW76_07560at 1582.833 kb on + strand, within HUW76_07560at 1582.833 kb on + strand, within HUW76_07560at 1582.833 kb on + strand, within HUW76_07560at 1582.836 kb on - strand, within HUW76_07560at 1582.841 kb on - strand, within HUW76_07560at 1582.841 kb on - strand, within HUW76_07560at 1582.886 kb on - strand, within HUW76_07560at 1582.899 kb on + strand, within HUW76_07560at 1582.951 kb on - strand, within HUW76_07560at 1582.974 kb on - strand, within HUW76_07560at 1583.080 kb on + strand, within HUW76_07560at 1583.102 kb on - strand, within HUW76_07560at 1583.122 kb on - strand, within HUW76_07560at 1583.122 kb on - strand, within HUW76_07560at 1583.122 kb on - strand, within HUW76_07560at 1583.122 kb on - strand, within HUW76_07560at 1583.122 kb on - strand, within HUW76_07560at 1583.151 kb on + strandat 1583.151 kb on + strandat 1583.171 kb on + strandat 1583.171 kb on + strandat 1583.181 kb on + strandat 1583.189 kb on - strandat 1583.374 kb on - strandat 1583.374 kb on - strandat 1583.426 kb on + strandat 1583.426 kb on + strandat 1583.434 kb on - strandat 1583.434 kb on - strandat 1583.472 kb on + strandat 1583.472 kb on + strandat 1583.489 kb on + strandat 1583.514 kb on + strandat 1583.514 kb on + strandat 1583.589 kb on + strandat 1583.598 kb on + strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.608 kb on + strandat 1583.608 kb on + strandat 1583.715 kb on - strandat 1583.715 kb on - strandat 1583.873 kb on + strand, within HUW76_07565at 1583.873 kb on + strand, within HUW76_07565at 1583.873 kb on + strand, within HUW76_07565at 1583.874 kb on + strand, within HUW76_07565at 1583.874 kb on + strand, within HUW76_07565at 1583.881 kb on - strand, within HUW76_07565at 1583.881 kb on - strand, within HUW76_07565at 1583.917 kb on + strand, within HUW76_07565at 1583.917 kb on + strand, within HUW76_07565at 1583.980 kb on + strand, within HUW76_07565at 1583.990 kb on + strand, within HUW76_07565at 1584.119 kb on - strand, within HUW76_07565at 1584.143 kb on + strand, within HUW76_07565at 1584.151 kb on - strand, within HUW76_07565at 1584.164 kb on - strand, within HUW76_07565at 1584.176 kb on + strand, within HUW76_07565at 1584.176 kb on + strand, within HUW76_07565at 1584.183 kb on - strand, within HUW76_07565at 1584.233 kb on - strand, within HUW76_07565at 1584.241 kb on - strand, within HUW76_07565at 1584.247 kb on - strand, within HUW76_07565at 1584.247 kb on - strand, within HUW76_07565at 1584.247 kb on - strand, within HUW76_07565at 1584.265 kb on - strand, within HUW76_07565

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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1,580,135 + HUW76_07550 0.56 -0.1
1,580,144 - HUW76_07550 0.57 +0.9
1,580,215 + HUW76_07550 0.66 -0.6
1,580,216 + HUW76_07550 0.66 -0.1
1,580,216 + HUW76_07550 0.66 -1.1
1,580,247 + HUW76_07550 0.70 +0.3
1,580,247 + HUW76_07550 0.70 +0.1
1,580,252 + HUW76_07550 0.70 -0.3
1,580,294 - HUW76_07550 0.76 -0.1
1,580,294 - HUW76_07550 0.76 -0.3
1,580,301 - HUW76_07550 0.77 +0.6
1,580,301 - HUW76_07550 0.77 +0.0
1,580,327 + HUW76_07550 0.80 -0.2
1,580,327 + HUW76_07550 0.80 -0.5
1,580,388 + HUW76_07550 0.87 -0.6
1,580,388 + HUW76_07550 0.87 -0.0
1,580,396 - HUW76_07550 0.88 +0.8
1,580,483 + -0.5
1,580,490 - +0.6
1,580,493 + -0.2
1,580,496 - -0.2
1,580,496 - -0.2
1,580,573 + HUW76_07555 0.20 +0.1
1,580,588 + HUW76_07555 0.26 +0.1
1,580,718 + HUW76_07555 0.70 +0.6
1,580,734 + HUW76_07555 0.75 +0.2
1,580,734 + HUW76_07555 0.75 +1.3
1,580,734 + HUW76_07555 0.75 -0.3
1,580,734 + HUW76_07555 0.75 -0.5
1,580,734 + HUW76_07555 0.75 -1.0
1,580,734 + HUW76_07555 0.75 +1.3
1,580,734 + HUW76_07555 0.75 +0.9
1,580,734 + HUW76_07555 0.75 -0.2
1,580,742 - HUW76_07555 0.78 -0.9
1,580,742 - HUW76_07555 0.78 +0.0
1,580,742 - HUW76_07555 0.78 -0.3
1,580,742 - HUW76_07555 0.78 -0.7
1,580,742 - HUW76_07555 0.78 +0.2
1,580,742 - HUW76_07555 0.78 -0.5
1,580,742 - HUW76_07555 0.78 -0.8
1,580,865 - -0.3
1,581,161 + +2.0
1,581,161 + -0.6
1,581,161 + -0.7
1,581,161 + -0.1
1,581,209 + -0.1
1,581,209 + +0.1
1,581,310 - -0.4
1,581,315 - -0.6
1,581,315 - -0.6
1,581,316 - +0.5
1,581,347 + HUW76_07560 0.11 -0.1
1,581,355 - HUW76_07560 0.11 +0.8
1,581,411 - HUW76_07560 0.14 +1.0
1,581,413 + HUW76_07560 0.14 -0.6
1,581,413 + HUW76_07560 0.14 -0.8
1,581,413 + HUW76_07560 0.14 +0.8
1,581,417 + HUW76_07560 0.14 -1.0
1,581,417 + HUW76_07560 0.14 +0.3
1,581,421 - HUW76_07560 0.14 +0.6
1,581,425 - HUW76_07560 0.14 -0.3
1,581,425 - HUW76_07560 0.14 +0.6
1,581,435 - HUW76_07560 0.15 +0.3
1,581,435 - HUW76_07560 0.15 -0.1
1,581,506 + HUW76_07560 0.18 -1.4
1,581,506 + HUW76_07560 0.18 +0.2
1,581,541 + HUW76_07560 0.20 -0.3
1,581,549 - HUW76_07560 0.20 +0.9
1,581,549 - HUW76_07560 0.20 +0.4
1,581,560 + HUW76_07560 0.20 +0.6
1,581,560 + HUW76_07560 0.20 +0.3
1,581,560 + HUW76_07560 0.20 -0.3
1,581,600 + HUW76_07560 0.22 +0.1
1,581,606 - HUW76_07560 0.22 -0.2
1,581,608 - HUW76_07560 0.23 +0.6
1,581,608 - HUW76_07560 0.23 -0.1
1,581,693 - HUW76_07560 0.26 +0.8
1,581,693 - HUW76_07560 0.26 +0.5
1,581,699 + HUW76_07560 0.27 +0.6
1,581,745 + HUW76_07560 0.29 +0.5
1,581,753 - HUW76_07560 0.29 +1.0
1,581,766 - HUW76_07560 0.30 +1.1
1,581,823 + HUW76_07560 0.32 -0.6
1,581,831 - HUW76_07560 0.32 -0.1
1,581,892 + HUW76_07560 0.35 -0.2
1,581,902 - HUW76_07560 0.36 -2.9
1,581,975 + HUW76_07560 0.39 +0.2
1,581,981 - HUW76_07560 0.39 +0.1
1,581,982 + HUW76_07560 0.39 +0.3
1,581,998 + HUW76_07560 0.40 -0.1
1,581,998 + HUW76_07560 0.40 -0.1
1,581,998 + HUW76_07560 0.40 -0.0
1,581,998 + HUW76_07560 0.40 -0.6
1,581,998 + HUW76_07560 0.40 +0.3
1,582,004 - HUW76_07560 0.40 -0.1
1,582,006 - HUW76_07560 0.40 +0.9
1,582,006 - HUW76_07560 0.40 +0.4
1,582,006 - HUW76_07560 0.40 +0.6
1,582,034 + HUW76_07560 0.42 -0.4
1,582,181 + HUW76_07560 0.48 -0.2
1,582,217 + HUW76_07560 0.50 -0.1
1,582,225 - HUW76_07560 0.50 -0.0
1,582,276 + HUW76_07560 0.52 -0.2
1,582,387 + HUW76_07560 0.57 -0.4
1,582,399 + HUW76_07560 0.58 +0.4
1,582,399 + HUW76_07560 0.58 +0.3
1,582,414 - HUW76_07560 0.58 +0.3
1,582,422 + HUW76_07560 0.59 -0.3
1,582,422 + HUW76_07560 0.59 -0.0
1,582,430 - HUW76_07560 0.59 +0.2
1,582,430 - HUW76_07560 0.59 +1.2
1,582,430 - HUW76_07560 0.59 +1.5
1,582,445 + HUW76_07560 0.60 -0.8
1,582,445 + HUW76_07560 0.60 +0.3
1,582,477 - HUW76_07560 0.61 +1.0
1,582,561 + HUW76_07560 0.65 -0.6
1,582,561 + HUW76_07560 0.65 -0.3
1,582,613 - HUW76_07560 0.67 +0.3
1,582,615 + HUW76_07560 0.67 -0.5
1,582,615 + HUW76_07560 0.67 -1.2
1,582,615 + HUW76_07560 0.67 -1.3
1,582,628 + HUW76_07560 0.68 -0.7
1,582,628 + HUW76_07560 0.68 -0.2
1,582,673 + HUW76_07560 0.70 +1.0
1,582,673 + HUW76_07560 0.70 -0.7
1,582,742 + HUW76_07560 0.73 -0.3
1,582,742 + HUW76_07560 0.73 -0.7
1,582,763 - HUW76_07560 0.74 -0.3
1,582,763 - HUW76_07560 0.74 +0.4
1,582,809 - HUW76_07560 0.76 +0.1
1,582,812 - HUW76_07560 0.76 +0.9
1,582,812 - HUW76_07560 0.76 +0.5
1,582,813 + HUW76_07560 0.76 +0.2
1,582,826 - HUW76_07560 0.77 +0.1
1,582,833 + HUW76_07560 0.77 +0.1
1,582,833 + HUW76_07560 0.77 -0.3
1,582,833 + HUW76_07560 0.77 -0.9
1,582,836 - HUW76_07560 0.77 -1.4
1,582,841 - HUW76_07560 0.77 -1.1
1,582,841 - HUW76_07560 0.77 +0.6
1,582,886 - HUW76_07560 0.79 -0.3
1,582,899 + HUW76_07560 0.80 -0.1
1,582,951 - HUW76_07560 0.82 +0.6
1,582,974 - HUW76_07560 0.83 +0.4
1,583,080 + HUW76_07560 0.88 -0.3
1,583,102 - HUW76_07560 0.89 -0.2
1,583,122 - HUW76_07560 0.90 +0.9
1,583,122 - HUW76_07560 0.90 +0.3
1,583,122 - HUW76_07560 0.90 +0.1
1,583,122 - HUW76_07560 0.90 -1.4
1,583,122 - HUW76_07560 0.90 +0.1
1,583,151 + -0.4
1,583,151 + -0.5
1,583,171 + -0.3
1,583,171 + -1.0
1,583,181 + -0.2
1,583,189 - +0.1
1,583,374 - +0.1
1,583,374 - +0.0
1,583,426 + -0.7
1,583,426 + -1.9
1,583,434 - +2.7
1,583,434 - -0.1
1,583,472 + -0.3
1,583,472 + -0.6
1,583,489 + +0.7
1,583,514 + -0.1
1,583,514 + +0.1
1,583,589 + -0.2
1,583,598 + -0.7
1,583,601 - +2.1
1,583,601 - +1.1
1,583,608 + +0.2
1,583,608 + -0.2
1,583,715 - +0.4
1,583,715 - +0.6
1,583,873 + HUW76_07565 0.11 -0.3
1,583,873 + HUW76_07565 0.11 -0.7
1,583,873 + HUW76_07565 0.11 -0.6
1,583,874 + HUW76_07565 0.11 -0.2
1,583,874 + HUW76_07565 0.11 -0.6
1,583,881 - HUW76_07565 0.11 +1.0
1,583,881 - HUW76_07565 0.11 +0.2
1,583,917 + HUW76_07565 0.12 -0.3
1,583,917 + HUW76_07565 0.12 +0.4
1,583,980 + HUW76_07565 0.13 -0.1
1,583,990 + HUW76_07565 0.13 +0.3
1,584,119 - HUW76_07565 0.16 +0.7
1,584,143 + HUW76_07565 0.17 -0.9
1,584,151 - HUW76_07565 0.17 +0.7
1,584,164 - HUW76_07565 0.17 +0.5
1,584,176 + HUW76_07565 0.17 -0.3
1,584,176 + HUW76_07565 0.17 -0.3
1,584,183 - HUW76_07565 0.18 +0.3
1,584,233 - HUW76_07565 0.19 -0.8
1,584,241 - HUW76_07565 0.19 +0.2
1,584,247 - HUW76_07565 0.19 -0.1
1,584,247 - HUW76_07565 0.19 +1.3
1,584,247 - HUW76_07565 0.19 +1.5
1,584,265 - HUW76_07565 0.19 +0.5

Or see this region's nucleotide sequence