Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_07385

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_07375 and HUW76_07380 overlap by 11 nucleotidesHUW76_07380 and HUW76_07385 are separated by 17 nucleotidesHUW76_07385 and HUW76_07390 are separated by 351 nucleotides HUW76_07375: HUW76_07375 - glycosyltransferase family 9 protein, at 1,536,402 to 1,537,421 _07375 HUW76_07380: HUW76_07380 - glycosyltransferase family 2 protein, at 1,537,411 to 1,538,190 _07380 HUW76_07385: HUW76_07385 - polysaccharide deacetylase family protein, at 1,538,208 to 1,539,300 _07385 HUW76_07390: HUW76_07390 - glutamate-1-semialdehyde 2,1-aminomutase, at 1,539,652 to 1,540,956 _07390 Position (kb) 1538 1539 1540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1537.685 kb on - strand, within HUW76_07380at 1538.193 kb on - strandat 1538.193 kb on - strandat 1538.194 kb on - strandat 1539.472 kb on - strandat 1539.472 kb on - strandat 1539.473 kb on - strandat 1539.473 kb on - strandat 1539.559 kb on + strandat 1539.559 kb on + strandat 1539.559 kb on + strandat 1539.569 kb on + strandat 1539.577 kb on - strandat 1539.577 kb on - strandat 1539.647 kb on + strandat 1539.647 kb on + strandat 1539.647 kb on + strandat 1539.647 kb on + strandat 1539.647 kb on + strandat 1539.647 kb on + strandat 1539.647 kb on + strandat 1539.647 kb on + strandat 1539.647 kb on + strandat 1539.647 kb on + strandat 1539.647 kb on + strandat 1539.655 kb on - strandat 1539.730 kb on - strandat 1539.754 kb on + strandat 1539.801 kb on + strand, within HUW76_07390at 1539.801 kb on + strand, within HUW76_07390at 1539.820 kb on + strand, within HUW76_07390at 1539.820 kb on + strand, within HUW76_07390at 1539.820 kb on + strand, within HUW76_07390at 1539.820 kb on + strand, within HUW76_07390at 1539.820 kb on + strand, within HUW76_07390at 1539.828 kb on - strand, within HUW76_07390at 1539.828 kb on - strand, within HUW76_07390at 1539.828 kb on - strand, within HUW76_07390at 1539.830 kb on + strand, within HUW76_07390at 1539.830 kb on + strand, within HUW76_07390at 1539.909 kb on + strand, within HUW76_07390at 1539.949 kb on + strand, within HUW76_07390at 1539.949 kb on + strand, within HUW76_07390at 1539.949 kb on + strand, within HUW76_07390at 1540.041 kb on + strand, within HUW76_07390at 1540.041 kb on + strand, within HUW76_07390at 1540.041 kb on + strand, within HUW76_07390at 1540.041 kb on + strand, within HUW76_07390at 1540.041 kb on + strand, within HUW76_07390at 1540.049 kb on - strand, within HUW76_07390at 1540.101 kb on - strand, within HUW76_07390at 1540.126 kb on + strand, within HUW76_07390at 1540.142 kb on - strand, within HUW76_07390at 1540.165 kb on + strand, within HUW76_07390at 1540.191 kb on + strand, within HUW76_07390at 1540.191 kb on + strand, within HUW76_07390at 1540.200 kb on - strand, within HUW76_07390at 1540.207 kb on + strand, within HUW76_07390at 1540.253 kb on + strand, within HUW76_07390at 1540.255 kb on + strand, within HUW76_07390at 1540.298 kb on - strand, within HUW76_07390

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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1,537,685 - HUW76_07380 0.35 -1.6
1,538,193 - -0.0
1,538,193 - -0.3
1,538,194 - +1.1
1,539,472 - +0.2
1,539,472 - -0.1
1,539,473 - -0.8
1,539,473 - -0.4
1,539,559 + -0.6
1,539,559 + -0.5
1,539,559 + -0.6
1,539,569 + -0.1
1,539,577 - -0.4
1,539,577 - +0.2
1,539,647 + +0.5
1,539,647 + -0.7
1,539,647 + +0.5
1,539,647 + +0.4
1,539,647 + -0.3
1,539,647 + +0.1
1,539,647 + -0.6
1,539,647 + -0.6
1,539,647 + +0.8
1,539,647 + -0.2
1,539,647 + +1.2
1,539,655 - +0.5
1,539,730 - +1.2
1,539,754 + +2.8
1,539,801 + HUW76_07390 0.11 +1.3
1,539,801 + HUW76_07390 0.11 -0.5
1,539,820 + HUW76_07390 0.13 +0.5
1,539,820 + HUW76_07390 0.13 -1.0
1,539,820 + HUW76_07390 0.13 -0.8
1,539,820 + HUW76_07390 0.13 -0.4
1,539,820 + HUW76_07390 0.13 -0.4
1,539,828 - HUW76_07390 0.13 +2.0
1,539,828 - HUW76_07390 0.13 +0.6
1,539,828 - HUW76_07390 0.13 +2.5
1,539,830 + HUW76_07390 0.14 -1.8
1,539,830 + HUW76_07390 0.14 +0.3
1,539,909 + HUW76_07390 0.20 -1.4
1,539,949 + HUW76_07390 0.23 -0.1
1,539,949 + HUW76_07390 0.23 -0.4
1,539,949 + HUW76_07390 0.23 +0.3
1,540,041 + HUW76_07390 0.30 +0.2
1,540,041 + HUW76_07390 0.30 +0.3
1,540,041 + HUW76_07390 0.30 +0.3
1,540,041 + HUW76_07390 0.30 +0.7
1,540,041 + HUW76_07390 0.30 -0.3
1,540,049 - HUW76_07390 0.30 +0.5
1,540,101 - HUW76_07390 0.34 +1.0
1,540,126 + HUW76_07390 0.36 +1.0
1,540,142 - HUW76_07390 0.38 +0.8
1,540,165 + HUW76_07390 0.39 -0.5
1,540,191 + HUW76_07390 0.41 +0.7
1,540,191 + HUW76_07390 0.41 -1.0
1,540,200 - HUW76_07390 0.42 +1.0
1,540,207 + HUW76_07390 0.43 +0.2
1,540,253 + HUW76_07390 0.46 -0.0
1,540,255 + HUW76_07390 0.46 -0.2
1,540,298 - HUW76_07390 0.50 +0.8

Or see this region's nucleotide sequence