Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_07060

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_07050 and HUW76_07055 are separated by 102 nucleotidesHUW76_07055 and HUW76_07060 are separated by 19 nucleotidesHUW76_07060 and HUW76_07065 are separated by 18 nucleotides HUW76_07050: HUW76_07050 - hypothetical protein, at 1,465,588 to 1,466,472 _07050 HUW76_07055: HUW76_07055 - shikimate kinase, at 1,466,575 to 1,467,093 _07055 HUW76_07060: HUW76_07060 - GTPase HflX, at 1,467,113 to 1,468,914 _07060 HUW76_07065: HUW76_07065 - WYL domain-containing protein, at 1,468,933 to 1,469,787 _07065 Position (kb) 1467 1468 1469Strain fitness (log2 ratio) -1 0 1 2 3at 1466.686 kb on - strand, within HUW76_07055at 1466.686 kb on - strand, within HUW76_07055at 1466.795 kb on + strand, within HUW76_07055at 1466.795 kb on + strand, within HUW76_07055at 1466.846 kb on + strand, within HUW76_07055at 1466.908 kb on + strand, within HUW76_07055at 1466.918 kb on + strand, within HUW76_07055at 1466.918 kb on + strand, within HUW76_07055at 1466.918 kb on + strand, within HUW76_07055at 1466.918 kb on + strand, within HUW76_07055at 1466.932 kb on + strand, within HUW76_07055at 1466.932 kb on + strand, within HUW76_07055at 1467.003 kb on + strand, within HUW76_07055at 1467.003 kb on + strand, within HUW76_07055at 1467.030 kb on - strand, within HUW76_07055at 1467.066 kb on + strandat 1467.066 kb on + strandat 1467.066 kb on + strandat 1467.066 kb on + strandat 1467.066 kb on + strandat 1467.066 kb on + strandat 1467.074 kb on - strandat 1467.116 kb on - strandat 1467.167 kb on + strandat 1467.169 kb on + strandat 1467.169 kb on + strandat 1467.177 kb on - strandat 1467.177 kb on - strandat 1467.247 kb on + strandat 1467.247 kb on + strandat 1467.313 kb on + strand, within HUW76_07060at 1467.313 kb on + strand, within HUW76_07060at 1467.313 kb on + strand, within HUW76_07060at 1467.313 kb on + strand, within HUW76_07060at 1467.315 kb on + strand, within HUW76_07060at 1467.316 kb on - strand, within HUW76_07060at 1467.329 kb on - strand, within HUW76_07060at 1467.338 kb on + strand, within HUW76_07060at 1467.338 kb on + strand, within HUW76_07060at 1467.372 kb on + strand, within HUW76_07060at 1467.372 kb on + strand, within HUW76_07060at 1467.453 kb on + strand, within HUW76_07060at 1467.458 kb on + strand, within HUW76_07060at 1467.458 kb on + strand, within HUW76_07060at 1467.458 kb on + strand, within HUW76_07060at 1467.468 kb on - strand, within HUW76_07060at 1467.483 kb on + strand, within HUW76_07060at 1467.484 kb on + strand, within HUW76_07060at 1467.484 kb on + strand, within HUW76_07060at 1467.517 kb on + strand, within HUW76_07060at 1467.527 kb on + strand, within HUW76_07060at 1467.527 kb on + strand, within HUW76_07060at 1467.540 kb on + strand, within HUW76_07060at 1467.540 kb on + strand, within HUW76_07060at 1467.621 kb on + strand, within HUW76_07060at 1467.621 kb on + strand, within HUW76_07060at 1467.641 kb on + strand, within HUW76_07060at 1467.648 kb on - strand, within HUW76_07060at 1467.671 kb on + strand, within HUW76_07060at 1467.671 kb on + strand, within HUW76_07060at 1467.671 kb on + strand, within HUW76_07060at 1467.696 kb on + strand, within HUW76_07060at 1467.787 kb on + strand, within HUW76_07060at 1467.805 kb on + strand, within HUW76_07060at 1467.891 kb on + strand, within HUW76_07060at 1467.891 kb on + strand, within HUW76_07060at 1467.891 kb on + strand, within HUW76_07060at 1467.892 kb on + strand, within HUW76_07060at 1467.892 kb on + strand, within HUW76_07060at 1467.899 kb on + strand, within HUW76_07060at 1467.899 kb on + strand, within HUW76_07060at 1467.899 kb on + strand, within HUW76_07060at 1467.914 kb on + strand, within HUW76_07060at 1467.914 kb on + strand, within HUW76_07060at 1467.914 kb on + strand, within HUW76_07060at 1467.914 kb on + strand, within HUW76_07060at 1467.922 kb on - strand, within HUW76_07060at 1467.999 kb on + strand, within HUW76_07060at 1467.999 kb on + strand, within HUW76_07060at 1467.999 kb on + strand, within HUW76_07060at 1467.999 kb on + strand, within HUW76_07060at 1468.030 kb on + strand, within HUW76_07060at 1468.040 kb on + strand, within HUW76_07060at 1468.040 kb on + strand, within HUW76_07060at 1468.041 kb on + strand, within HUW76_07060at 1468.041 kb on + strand, within HUW76_07060at 1468.067 kb on + strand, within HUW76_07060at 1468.067 kb on + strand, within HUW76_07060at 1468.070 kb on - strand, within HUW76_07060at 1468.187 kb on + strand, within HUW76_07060at 1468.192 kb on + strand, within HUW76_07060at 1468.192 kb on + strand, within HUW76_07060at 1468.205 kb on + strand, within HUW76_07060at 1468.205 kb on + strand, within HUW76_07060at 1468.215 kb on + strand, within HUW76_07060at 1468.215 kb on + strand, within HUW76_07060at 1468.215 kb on + strand, within HUW76_07060at 1468.288 kb on + strand, within HUW76_07060at 1468.334 kb on + strand, within HUW76_07060at 1468.334 kb on + strand, within HUW76_07060at 1468.341 kb on + strand, within HUW76_07060at 1468.367 kb on + strand, within HUW76_07060at 1468.370 kb on + strand, within HUW76_07060at 1468.378 kb on + strand, within HUW76_07060at 1468.378 kb on + strand, within HUW76_07060at 1468.449 kb on + strand, within HUW76_07060at 1468.449 kb on + strand, within HUW76_07060at 1468.513 kb on + strand, within HUW76_07060at 1468.513 kb on + strand, within HUW76_07060at 1468.513 kb on + strand, within HUW76_07060at 1468.513 kb on + strand, within HUW76_07060at 1468.541 kb on + strand, within HUW76_07060at 1468.541 kb on + strand, within HUW76_07060at 1468.814 kb on + strandat 1468.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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1,466,686 - HUW76_07055 0.21 +1.6
1,466,686 - HUW76_07055 0.21 +2.8
1,466,795 + HUW76_07055 0.42 +1.1
1,466,795 + HUW76_07055 0.42 +0.0
1,466,846 + HUW76_07055 0.52 -0.6
1,466,908 + HUW76_07055 0.64 -0.9
1,466,918 + HUW76_07055 0.66 +0.2
1,466,918 + HUW76_07055 0.66 -1.0
1,466,918 + HUW76_07055 0.66 +0.9
1,466,918 + HUW76_07055 0.66 -0.4
1,466,932 + HUW76_07055 0.69 +0.9
1,466,932 + HUW76_07055 0.69 +0.4
1,467,003 + HUW76_07055 0.82 -0.5
1,467,003 + HUW76_07055 0.82 -0.5
1,467,030 - HUW76_07055 0.88 +2.9
1,467,066 + +0.4
1,467,066 + +0.3
1,467,066 + +0.2
1,467,066 + +0.5
1,467,066 + +0.2
1,467,066 + -1.1
1,467,074 - +2.4
1,467,116 - +0.9
1,467,167 + -0.5
1,467,169 + -0.4
1,467,169 + -0.1
1,467,177 - +0.6
1,467,177 - +1.1
1,467,247 + -0.3
1,467,247 + -0.6
1,467,313 + HUW76_07060 0.11 +0.7
1,467,313 + HUW76_07060 0.11 -0.2
1,467,313 + HUW76_07060 0.11 -0.3
1,467,313 + HUW76_07060 0.11 -0.4
1,467,315 + HUW76_07060 0.11 -0.6
1,467,316 - HUW76_07060 0.11 -0.6
1,467,329 - HUW76_07060 0.12 -0.3
1,467,338 + HUW76_07060 0.12 -0.3
1,467,338 + HUW76_07060 0.12 -0.5
1,467,372 + HUW76_07060 0.14 -0.4
1,467,372 + HUW76_07060 0.14 -0.1
1,467,453 + HUW76_07060 0.19 +0.5
1,467,458 + HUW76_07060 0.19 +0.4
1,467,458 + HUW76_07060 0.19 -1.3
1,467,458 + HUW76_07060 0.19 -0.3
1,467,468 - HUW76_07060 0.20 -0.6
1,467,483 + HUW76_07060 0.21 +0.9
1,467,484 + HUW76_07060 0.21 -0.1
1,467,484 + HUW76_07060 0.21 -0.4
1,467,517 + HUW76_07060 0.22 -0.5
1,467,527 + HUW76_07060 0.23 +0.0
1,467,527 + HUW76_07060 0.23 -0.6
1,467,540 + HUW76_07060 0.24 -0.2
1,467,540 + HUW76_07060 0.24 -0.2
1,467,621 + HUW76_07060 0.28 -0.5
1,467,621 + HUW76_07060 0.28 -1.1
1,467,641 + HUW76_07060 0.29 -0.8
1,467,648 - HUW76_07060 0.30 -1.1
1,467,671 + HUW76_07060 0.31 -0.7
1,467,671 + HUW76_07060 0.31 -0.4
1,467,671 + HUW76_07060 0.31 +0.1
1,467,696 + HUW76_07060 0.32 -0.7
1,467,787 + HUW76_07060 0.37 -0.1
1,467,805 + HUW76_07060 0.38 -0.5
1,467,891 + HUW76_07060 0.43 -0.3
1,467,891 + HUW76_07060 0.43 -0.7
1,467,891 + HUW76_07060 0.43 +2.8
1,467,892 + HUW76_07060 0.43 -0.3
1,467,892 + HUW76_07060 0.43 -0.5
1,467,899 + HUW76_07060 0.44 -0.3
1,467,899 + HUW76_07060 0.44 -0.5
1,467,899 + HUW76_07060 0.44 -0.0
1,467,914 + HUW76_07060 0.44 -0.8
1,467,914 + HUW76_07060 0.44 +1.0
1,467,914 + HUW76_07060 0.44 -0.2
1,467,914 + HUW76_07060 0.44 -0.4
1,467,922 - HUW76_07060 0.45 +0.9
1,467,999 + HUW76_07060 0.49 +0.5
1,467,999 + HUW76_07060 0.49 +0.9
1,467,999 + HUW76_07060 0.49 -1.1
1,467,999 + HUW76_07060 0.49 +0.4
1,468,030 + HUW76_07060 0.51 -0.5
1,468,040 + HUW76_07060 0.51 +0.9
1,468,040 + HUW76_07060 0.51 -0.6
1,468,041 + HUW76_07060 0.51 -0.2
1,468,041 + HUW76_07060 0.51 +0.1
1,468,067 + HUW76_07060 0.53 -0.1
1,468,067 + HUW76_07060 0.53 -0.6
1,468,070 - HUW76_07060 0.53 +0.6
1,468,187 + HUW76_07060 0.60 -0.2
1,468,192 + HUW76_07060 0.60 -0.4
1,468,192 + HUW76_07060 0.60 -0.3
1,468,205 + HUW76_07060 0.61 -0.1
1,468,205 + HUW76_07060 0.61 -0.7
1,468,215 + HUW76_07060 0.61 -0.2
1,468,215 + HUW76_07060 0.61 -0.2
1,468,215 + HUW76_07060 0.61 -1.2
1,468,288 + HUW76_07060 0.65 -0.3
1,468,334 + HUW76_07060 0.68 -0.1
1,468,334 + HUW76_07060 0.68 -0.5
1,468,341 + HUW76_07060 0.68 -0.6
1,468,367 + HUW76_07060 0.70 -0.8
1,468,370 + HUW76_07060 0.70 -0.3
1,468,378 + HUW76_07060 0.70 +0.7
1,468,378 + HUW76_07060 0.70 -0.5
1,468,449 + HUW76_07060 0.74 -0.2
1,468,449 + HUW76_07060 0.74 -0.3
1,468,513 + HUW76_07060 0.78 -0.6
1,468,513 + HUW76_07060 0.78 +0.1
1,468,513 + HUW76_07060 0.78 +0.2
1,468,513 + HUW76_07060 0.78 -0.4
1,468,541 + HUW76_07060 0.79 -0.8
1,468,541 + HUW76_07060 0.79 -0.2
1,468,814 + +0.3
1,468,814 + -0.1

Or see this region's nucleotide sequence