Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_06705

Experiment: Time0_primer_test

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHUW76_06695 and HUW76_06700 overlap by 14 nucleotidesHUW76_06700 and HUW76_06705 are separated by 21 nucleotidesHUW76_06705 and HUW76_06710 are separated by 127 nucleotidesHUW76_06710 and HUW76_06715 are separated by 5 nucleotides HUW76_06695: HUW76_06695 - excinuclease ABC subunit UvrC, at 1,391,111 to 1,392,880 _06695 HUW76_06700: HUW76_06700 - RNase adapter RapZ, at 1,392,867 to 1,393,739 _06700 HUW76_06705: HUW76_06705 - CoA-disulfide reductase, at 1,393,761 to 1,395,110 _06705 HUW76_06710: HUW76_06710 - hypothetical protein, at 1,395,238 to 1,395,819 _06710 HUW76_06715: HUW76_06715 - AAA family ATPase, at 1,395,825 to 1,397,150 _06715 Position (kb) 1393 1394 1395 1396Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1392.812 kb on - strandat 1392.981 kb on - strand, within HUW76_06700at 1392.981 kb on - strand, within HUW76_06700at 1392.983 kb on - strand, within HUW76_06700at 1392.991 kb on - strand, within HUW76_06700at 1393.177 kb on - strand, within HUW76_06700at 1393.177 kb on - strand, within HUW76_06700at 1393.217 kb on - strand, within HUW76_06700at 1393.342 kb on - strand, within HUW76_06700at 1393.438 kb on - strand, within HUW76_06700at 1393.456 kb on - strand, within HUW76_06700at 1393.456 kb on - strand, within HUW76_06700at 1393.456 kb on - strand, within HUW76_06700at 1393.648 kb on + strand, within HUW76_06700at 1393.709 kb on - strandat 1393.709 kb on - strandat 1393.845 kb on + strandat 1393.916 kb on - strand, within HUW76_06705at 1393.916 kb on - strand, within HUW76_06705at 1394.000 kb on - strand, within HUW76_06705at 1394.000 kb on - strand, within HUW76_06705at 1394.010 kb on - strand, within HUW76_06705at 1394.075 kb on - strand, within HUW76_06705at 1394.075 kb on - strand, within HUW76_06705at 1394.075 kb on - strand, within HUW76_06705at 1394.075 kb on - strand, within HUW76_06705at 1394.110 kb on - strand, within HUW76_06705at 1394.126 kb on - strand, within HUW76_06705at 1394.126 kb on - strand, within HUW76_06705at 1394.248 kb on - strand, within HUW76_06705at 1394.255 kb on - strand, within HUW76_06705at 1394.255 kb on - strand, within HUW76_06705at 1394.258 kb on - strand, within HUW76_06705at 1394.258 kb on - strand, within HUW76_06705at 1394.265 kb on - strand, within HUW76_06705at 1394.265 kb on - strand, within HUW76_06705at 1394.275 kb on - strand, within HUW76_06705at 1394.275 kb on - strand, within HUW76_06705at 1394.276 kb on + strand, within HUW76_06705at 1394.360 kb on + strand, within HUW76_06705at 1394.422 kb on - strand, within HUW76_06705at 1394.422 kb on - strand, within HUW76_06705at 1394.443 kb on + strand, within HUW76_06705at 1394.504 kb on - strand, within HUW76_06705at 1394.552 kb on - strand, within HUW76_06705at 1394.692 kb on - strand, within HUW76_06705at 1394.692 kb on - strand, within HUW76_06705at 1394.722 kb on - strand, within HUW76_06705at 1394.722 kb on - strand, within HUW76_06705at 1394.723 kb on - strand, within HUW76_06705at 1394.723 kb on - strand, within HUW76_06705at 1394.723 kb on - strand, within HUW76_06705at 1394.723 kb on - strand, within HUW76_06705at 1394.747 kb on + strand, within HUW76_06705at 1394.747 kb on + strand, within HUW76_06705at 1394.755 kb on - strand, within HUW76_06705at 1394.755 kb on - strand, within HUW76_06705at 1394.755 kb on - strand, within HUW76_06705at 1394.755 kb on - strand, within HUW76_06705at 1394.755 kb on - strand, within HUW76_06705at 1394.755 kb on - strand, within HUW76_06705at 1394.890 kb on + strand, within HUW76_06705at 1394.986 kb on + strandat 1394.986 kb on + strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1394.994 kb on - strandat 1395.017 kb on + strandat 1395.017 kb on + strandat 1395.017 kb on + strandat 1395.017 kb on + strandat 1395.063 kb on + strandat 1395.071 kb on - strandat 1395.206 kb on + strandat 1395.214 kb on - strandat 1395.214 kb on - strandat 1395.214 kb on - strandat 1395.252 kb on + strandat 1395.429 kb on - strand, within HUW76_06710at 1395.429 kb on - strand, within HUW76_06710at 1395.464 kb on + strand, within HUW76_06710at 1395.500 kb on - strand, within HUW76_06710at 1395.500 kb on - strand, within HUW76_06710at 1395.600 kb on + strand, within HUW76_06710at 1395.600 kb on + strand, within HUW76_06710at 1395.664 kb on - strand, within HUW76_06710at 1395.833 kb on - strandat 1395.833 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
remove
1,392,812 - -0.9
1,392,981 - HUW76_06700 0.13 +0.6
1,392,981 - HUW76_06700 0.13 +0.9
1,392,983 - HUW76_06700 0.13 +3.1
1,392,991 - HUW76_06700 0.14 +1.4
1,393,177 - HUW76_06700 0.36 +2.7
1,393,177 - HUW76_06700 0.36 +2.9
1,393,217 - HUW76_06700 0.40 -0.1
1,393,342 - HUW76_06700 0.54 +3.9
1,393,438 - HUW76_06700 0.65 +1.5
1,393,456 - HUW76_06700 0.67 +2.9
1,393,456 - HUW76_06700 0.67 +2.2
1,393,456 - HUW76_06700 0.67 +1.6
1,393,648 + HUW76_06700 0.89 -0.1
1,393,709 - +2.9
1,393,709 - +1.4
1,393,845 + +0.9
1,393,916 - HUW76_06705 0.11 -0.5
1,393,916 - HUW76_06705 0.11 -0.6
1,394,000 - HUW76_06705 0.18 -0.4
1,394,000 - HUW76_06705 0.18 -2.2
1,394,010 - HUW76_06705 0.18 -0.2
1,394,075 - HUW76_06705 0.23 -0.2
1,394,075 - HUW76_06705 0.23 -1.1
1,394,075 - HUW76_06705 0.23 -0.1
1,394,075 - HUW76_06705 0.23 -0.3
1,394,110 - HUW76_06705 0.26 -0.3
1,394,126 - HUW76_06705 0.27 -1.1
1,394,126 - HUW76_06705 0.27 +0.8
1,394,248 - HUW76_06705 0.36 -0.0
1,394,255 - HUW76_06705 0.37 -0.4
1,394,255 - HUW76_06705 0.37 +0.1
1,394,258 - HUW76_06705 0.37 +0.0
1,394,258 - HUW76_06705 0.37 -0.7
1,394,265 - HUW76_06705 0.37 -1.4
1,394,265 - HUW76_06705 0.37 -0.5
1,394,275 - HUW76_06705 0.38 -0.0
1,394,275 - HUW76_06705 0.38 -0.4
1,394,276 + HUW76_06705 0.38 +1.9
1,394,360 + HUW76_06705 0.44 +2.8
1,394,422 - HUW76_06705 0.49 +0.0
1,394,422 - HUW76_06705 0.49 -0.4
1,394,443 + HUW76_06705 0.51 +0.5
1,394,504 - HUW76_06705 0.55 -0.2
1,394,552 - HUW76_06705 0.59 -0.3
1,394,692 - HUW76_06705 0.69 -0.7
1,394,692 - HUW76_06705 0.69 -0.4
1,394,722 - HUW76_06705 0.71 -0.6
1,394,722 - HUW76_06705 0.71 +0.1
1,394,723 - HUW76_06705 0.71 -0.8
1,394,723 - HUW76_06705 0.71 -0.0
1,394,723 - HUW76_06705 0.71 -0.3
1,394,723 - HUW76_06705 0.71 -0.7
1,394,747 + HUW76_06705 0.73 -0.5
1,394,747 + HUW76_06705 0.73 -0.1
1,394,755 - HUW76_06705 0.74 -0.2
1,394,755 - HUW76_06705 0.74 +0.0
1,394,755 - HUW76_06705 0.74 -0.6
1,394,755 - HUW76_06705 0.74 -0.7
1,394,755 - HUW76_06705 0.74 -0.7
1,394,755 - HUW76_06705 0.74 -0.9
1,394,890 + HUW76_06705 0.84 +1.4
1,394,986 + +1.5
1,394,986 + +2.8
1,394,994 - -0.5
1,394,994 - +0.2
1,394,994 - -1.1
1,394,994 - +0.0
1,394,994 - -0.2
1,394,994 - -0.1
1,394,994 - -0.4
1,394,994 - -0.4
1,394,994 - -0.2
1,394,994 - -0.1
1,394,994 - +0.6
1,394,994 - +0.2
1,394,994 - -0.4
1,395,017 + +0.5
1,395,017 + -0.6
1,395,017 + +1.3
1,395,017 + +0.4
1,395,063 + +0.8
1,395,071 - -0.8
1,395,206 + +1.5
1,395,214 - -1.0
1,395,214 - -0.4
1,395,214 - -1.8
1,395,252 + -0.2
1,395,429 - HUW76_06710 0.33 +0.1
1,395,429 - HUW76_06710 0.33 -0.3
1,395,464 + HUW76_06710 0.39 -1.5
1,395,500 - HUW76_06710 0.45 -0.5
1,395,500 - HUW76_06710 0.45 +0.1
1,395,600 + HUW76_06710 0.62 +0.0
1,395,600 + HUW76_06710 0.62 +0.6
1,395,664 - HUW76_06710 0.73 -0.6
1,395,833 - +0.3
1,395,833 - -1.0

Or see this region's nucleotide sequence