Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_05910

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_05900 and HUW76_05905 are separated by 18 nucleotidesHUW76_05905 and HUW76_05910 are separated by 25 nucleotidesHUW76_05910 and HUW76_05915 are separated by 11 nucleotidesHUW76_05915 and HUW76_05920 are separated by 8 nucleotides HUW76_05900: HUW76_05900 - hypothetical protein, at 1,205,008 to 1,205,790 _05900 HUW76_05905: HUW76_05905 - Bax inhibitor-1/YccA family protein, at 1,205,809 to 1,206,495 _05905 HUW76_05910: HUW76_05910 - AMP-binding protein, at 1,206,521 to 1,209,019 _05910 HUW76_05915: HUW76_05915 - hypothetical protein, at 1,209,031 to 1,209,180 _05915 HUW76_05920: HUW76_05920 - tRNA 2-thiocytidine(32) synthetase TtcA, at 1,209,189 to 1,210,022 _05920 Position (kb) 1206 1207 1208 1209 1210Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1205.523 kb on + strand, within HUW76_05900at 1205.523 kb on + strand, within HUW76_05900at 1205.523 kb on + strand, within HUW76_05900at 1205.523 kb on + strand, within HUW76_05900at 1205.523 kb on + strand, within HUW76_05900at 1205.531 kb on - strand, within HUW76_05900at 1205.531 kb on - strand, within HUW76_05900at 1205.542 kb on - strand, within HUW76_05900at 1205.586 kb on - strand, within HUW76_05900at 1205.656 kb on - strand, within HUW76_05900at 1205.656 kb on - strand, within HUW76_05900at 1205.661 kb on - strand, within HUW76_05900at 1205.665 kb on + strand, within HUW76_05900at 1205.665 kb on + strand, within HUW76_05900at 1205.760 kb on - strandat 1205.760 kb on - strandat 1205.871 kb on + strandat 1205.886 kb on - strand, within HUW76_05905at 1205.886 kb on - strand, within HUW76_05905at 1206.020 kb on + strand, within HUW76_05905at 1206.100 kb on + strand, within HUW76_05905at 1206.183 kb on - strand, within HUW76_05905at 1206.183 kb on - strand, within HUW76_05905at 1206.185 kb on - strand, within HUW76_05905at 1206.185 kb on - strand, within HUW76_05905at 1206.185 kb on - strand, within HUW76_05905at 1206.185 kb on - strand, within HUW76_05905at 1206.393 kb on - strand, within HUW76_05905at 1206.393 kb on - strand, within HUW76_05905at 1206.393 kb on - strand, within HUW76_05905at 1206.393 kb on - strand, within HUW76_05905at 1206.424 kb on - strand, within HUW76_05905at 1206.424 kb on - strand, within HUW76_05905at 1206.589 kb on + strandat 1206.677 kb on - strandat 1206.748 kb on - strandat 1206.978 kb on - strand, within HUW76_05910at 1206.978 kb on - strand, within HUW76_05910at 1207.201 kb on - strand, within HUW76_05910at 1207.329 kb on - strand, within HUW76_05910at 1207.603 kb on - strand, within HUW76_05910at 1207.658 kb on - strand, within HUW76_05910at 1207.769 kb on - strand, within HUW76_05910at 1207.769 kb on - strand, within HUW76_05910at 1207.790 kb on - strand, within HUW76_05910at 1207.894 kb on - strand, within HUW76_05910at 1207.894 kb on - strand, within HUW76_05910at 1207.939 kb on - strand, within HUW76_05910at 1207.939 kb on - strand, within HUW76_05910at 1207.939 kb on - strand, within HUW76_05910at 1208.070 kb on - strand, within HUW76_05910at 1208.070 kb on - strand, within HUW76_05910at 1208.070 kb on - strand, within HUW76_05910at 1208.070 kb on - strand, within HUW76_05910at 1208.077 kb on - strand, within HUW76_05910at 1208.143 kb on - strand, within HUW76_05910at 1208.143 kb on - strand, within HUW76_05910at 1208.237 kb on - strand, within HUW76_05910at 1208.237 kb on - strand, within HUW76_05910at 1208.249 kb on - strand, within HUW76_05910at 1208.405 kb on - strand, within HUW76_05910at 1208.405 kb on - strand, within HUW76_05910at 1208.405 kb on - strand, within HUW76_05910at 1208.405 kb on - strand, within HUW76_05910at 1208.441 kb on - strand, within HUW76_05910at 1208.497 kb on + strand, within HUW76_05910at 1208.505 kb on - strand, within HUW76_05910at 1208.505 kb on - strand, within HUW76_05910at 1208.505 kb on - strand, within HUW76_05910at 1208.547 kb on - strand, within HUW76_05910at 1208.767 kb on - strand, within HUW76_05910at 1208.775 kb on - strandat 1208.776 kb on - strandat 1208.776 kb on - strandat 1208.788 kb on + strandat 1208.796 kb on - strandat 1208.800 kb on + strandat 1208.860 kb on - strandat 1208.896 kb on - strandat 1208.896 kb on - strandat 1208.978 kb on - strandat 1208.990 kb on - strandat 1209.085 kb on + strand, within HUW76_05915at 1209.123 kb on + strand, within HUW76_05915at 1209.202 kb on - strandat 1209.202 kb on - strandat 1209.227 kb on - strandat 1209.227 kb on - strandat 1209.243 kb on - strandat 1209.243 kb on - strandat 1209.358 kb on - strand, within HUW76_05920at 1209.367 kb on - strand, within HUW76_05920at 1209.548 kb on + strand, within HUW76_05920at 1209.555 kb on + strand, within HUW76_05920at 1209.570 kb on + strand, within HUW76_05920at 1209.604 kb on - strand, within HUW76_05920at 1209.739 kb on - strand, within HUW76_05920at 1209.739 kb on - strand, within HUW76_05920at 1209.739 kb on - strand, within HUW76_05920at 1209.739 kb on - strand, within HUW76_05920at 1209.824 kb on + strand, within HUW76_05920at 1209.824 kb on + strand, within HUW76_05920at 1209.824 kb on + strand, within HUW76_05920at 1209.832 kb on - strand, within HUW76_05920at 1209.832 kb on - strand, within HUW76_05920at 1209.832 kb on - strand, within HUW76_05920at 1209.832 kb on - strand, within HUW76_05920at 1209.832 kb on - strand, within HUW76_05920at 1209.832 kb on - strand, within HUW76_05920at 1209.832 kb on - strand, within HUW76_05920at 1209.832 kb on - strand, within HUW76_05920at 1209.859 kb on - strand, within HUW76_05920at 1209.859 kb on - strand, within HUW76_05920at 1209.867 kb on + strand, within HUW76_05920at 1209.943 kb on - strandat 1209.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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1,205,523 + HUW76_05900 0.66 +4.1
1,205,523 + HUW76_05900 0.66 +0.4
1,205,523 + HUW76_05900 0.66 +0.5
1,205,523 + HUW76_05900 0.66 +1.0
1,205,523 + HUW76_05900 0.66 +3.1
1,205,531 - HUW76_05900 0.67 +4.1
1,205,531 - HUW76_05900 0.67 +2.4
1,205,542 - HUW76_05900 0.68 +2.6
1,205,586 - HUW76_05900 0.74 +3.1
1,205,656 - HUW76_05900 0.83 +2.3
1,205,656 - HUW76_05900 0.83 +0.6
1,205,661 - HUW76_05900 0.83 +2.8
1,205,665 + HUW76_05900 0.84 +3.5
1,205,665 + HUW76_05900 0.84 +2.0
1,205,760 - +2.7
1,205,760 - +2.3
1,205,871 + +3.3
1,205,886 - HUW76_05905 0.11 -2.0
1,205,886 - HUW76_05905 0.11 +0.1
1,206,020 + HUW76_05905 0.31 +1.3
1,206,100 + HUW76_05905 0.42 +1.2
1,206,183 - HUW76_05905 0.54 +0.0
1,206,183 - HUW76_05905 0.54 +0.0
1,206,185 - HUW76_05905 0.55 -0.3
1,206,185 - HUW76_05905 0.55 -1.1
1,206,185 - HUW76_05905 0.55 +0.2
1,206,185 - HUW76_05905 0.55 +0.1
1,206,393 - HUW76_05905 0.85 -0.3
1,206,393 - HUW76_05905 0.85 +0.3
1,206,393 - HUW76_05905 0.85 -1.6
1,206,393 - HUW76_05905 0.85 -1.0
1,206,424 - HUW76_05905 0.90 -0.4
1,206,424 - HUW76_05905 0.90 +0.3
1,206,589 + -0.0
1,206,677 - -0.5
1,206,748 - -0.5
1,206,978 - HUW76_05910 0.18 +1.5
1,206,978 - HUW76_05910 0.18 -2.5
1,207,201 - HUW76_05910 0.27 -1.5
1,207,329 - HUW76_05910 0.32 -0.6
1,207,603 - HUW76_05910 0.43 +1.1
1,207,658 - HUW76_05910 0.45 +4.1
1,207,769 - HUW76_05910 0.50 +1.0
1,207,769 - HUW76_05910 0.50 +0.4
1,207,790 - HUW76_05910 0.51 +2.1
1,207,894 - HUW76_05910 0.55 +0.1
1,207,894 - HUW76_05910 0.55 +0.8
1,207,939 - HUW76_05910 0.57 +1.6
1,207,939 - HUW76_05910 0.57 +0.8
1,207,939 - HUW76_05910 0.57 +1.3
1,208,070 - HUW76_05910 0.62 +1.0
1,208,070 - HUW76_05910 0.62 +0.6
1,208,070 - HUW76_05910 0.62 +1.1
1,208,070 - HUW76_05910 0.62 +1.1
1,208,077 - HUW76_05910 0.62 +0.9
1,208,143 - HUW76_05910 0.65 +0.5
1,208,143 - HUW76_05910 0.65 +1.4
1,208,237 - HUW76_05910 0.69 +1.1
1,208,237 - HUW76_05910 0.69 +1.7
1,208,249 - HUW76_05910 0.69 +1.0
1,208,405 - HUW76_05910 0.75 +0.6
1,208,405 - HUW76_05910 0.75 +2.1
1,208,405 - HUW76_05910 0.75 +1.2
1,208,405 - HUW76_05910 0.75 +0.9
1,208,441 - HUW76_05910 0.77 +1.3
1,208,497 + HUW76_05910 0.79 -0.1
1,208,505 - HUW76_05910 0.79 +1.5
1,208,505 - HUW76_05910 0.79 +1.0
1,208,505 - HUW76_05910 0.79 +1.3
1,208,547 - HUW76_05910 0.81 +1.5
1,208,767 - HUW76_05910 0.90 +2.1
1,208,775 - +0.7
1,208,776 - +1.2
1,208,776 - +1.1
1,208,788 + -0.2
1,208,796 - +1.4
1,208,800 + +1.0
1,208,860 - +0.6
1,208,896 - +1.0
1,208,896 - +1.1
1,208,978 - +1.4
1,208,990 - +3.0
1,209,085 + HUW76_05915 0.36 +2.5
1,209,123 + HUW76_05915 0.61 +0.1
1,209,202 - -2.2
1,209,202 - +0.8
1,209,227 - +0.6
1,209,227 - -0.5
1,209,243 - +0.2
1,209,243 - -0.6
1,209,358 - HUW76_05920 0.20 -0.7
1,209,367 - HUW76_05920 0.21 -0.6
1,209,548 + HUW76_05920 0.43 +1.6
1,209,555 + HUW76_05920 0.44 -0.6
1,209,570 + HUW76_05920 0.46 -0.0
1,209,604 - HUW76_05920 0.50 +0.4
1,209,739 - HUW76_05920 0.66 +0.2
1,209,739 - HUW76_05920 0.66 -1.2
1,209,739 - HUW76_05920 0.66 -0.2
1,209,739 - HUW76_05920 0.66 +0.6
1,209,824 + HUW76_05920 0.76 +1.0
1,209,824 + HUW76_05920 0.76 +2.0
1,209,824 + HUW76_05920 0.76 +1.7
1,209,832 - HUW76_05920 0.77 -0.4
1,209,832 - HUW76_05920 0.77 +0.6
1,209,832 - HUW76_05920 0.77 +0.1
1,209,832 - HUW76_05920 0.77 +0.1
1,209,832 - HUW76_05920 0.77 -1.2
1,209,832 - HUW76_05920 0.77 -0.3
1,209,832 - HUW76_05920 0.77 -0.5
1,209,832 - HUW76_05920 0.77 +0.5
1,209,859 - HUW76_05920 0.80 +0.2
1,209,859 - HUW76_05920 0.80 -0.1
1,209,867 + HUW76_05920 0.81 +0.2
1,209,943 - -0.5
1,209,950 - -0.4

Or see this region's nucleotide sequence