Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_04740 and HUW76_04745 are separated by 11 nucleotides HUW76_04745 and HUW76_04750 are separated by 203 nucleotides HUW76_04750 and HUW76_04755 are separated by 20 nucleotides HUW76_04755 and HUW76_04760 are separated by 25 nucleotides
HUW76_04740: HUW76_04740 - threonine/serine exporter ThrE family protein, at 955,452 to 956,210
_04740
HUW76_04745: HUW76_04745 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 956,222 to 956,953
_04745
HUW76_04750: HUW76_04750 - acyl-CoA dehydrogenase, at 957,157 to 958,302
_04750
HUW76_04755: HUW76_04755 - electron transfer flavoprotein subunit beta/FixA family protein, at 958,323 to 959,111
_04755
HUW76_04760: HUW76_04760 - electron transfer flavoprotein subunit alpha/FixB family protein, at 959,137 to 960,312
_04760
Position (kb) 957
958
959 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 956.204 kb on + strand at 956.204 kb on + strand at 956.207 kb on + strand at 956.424 kb on - strand, within HUW76_04745 at 956.424 kb on - strand, within HUW76_04745 at 956.431 kb on + strand, within HUW76_04745 at 956.460 kb on + strand, within HUW76_04745 at 956.460 kb on + strand, within HUW76_04745 at 956.460 kb on + strand, within HUW76_04745 at 956.468 kb on - strand, within HUW76_04745 at 956.476 kb on - strand, within HUW76_04745 at 956.579 kb on - strand, within HUW76_04745 at 956.713 kb on + strand, within HUW76_04745 at 956.713 kb on + strand, within HUW76_04745 at 956.924 kb on + strand at 956.926 kb on + strand at 956.926 kb on + strand at 956.926 kb on + strand at 956.926 kb on + strand at 956.926 kb on + strand at 956.926 kb on + strand at 956.926 kb on + strand at 956.926 kb on + strand at 956.933 kb on - strand at 956.934 kb on - strand at 956.934 kb on - strand at 956.934 kb on - strand at 956.934 kb on - strand at 956.936 kb on + strand at 957.315 kb on + strand, within HUW76_04750 at 957.315 kb on + strand, within HUW76_04750 at 957.333 kb on + strand, within HUW76_04750 at 957.512 kb on + strand, within HUW76_04750 at 958.154 kb on + strand, within HUW76_04750 at 958.154 kb on + strand, within HUW76_04750 at 958.155 kb on + strand, within HUW76_04750 at 958.322 kb on + strand at 958.327 kb on + strand at 958.327 kb on + strand at 958.335 kb on - strand at 958.470 kb on + strand, within HUW76_04755 at 958.518 kb on + strand, within HUW76_04755 at 958.561 kb on + strand, within HUW76_04755 at 958.568 kb on + strand, within HUW76_04755 at 958.696 kb on + strand, within HUW76_04755 at 958.725 kb on + strand, within HUW76_04755 at 958.727 kb on + strand, within HUW76_04755 at 958.735 kb on + strand, within HUW76_04755 at 958.744 kb on + strand, within HUW76_04755 at 958.812 kb on + strand, within HUW76_04755 at 958.840 kb on + strand, within HUW76_04755 at 958.897 kb on + strand, within HUW76_04755 at 958.897 kb on + strand, within HUW76_04755 at 958.939 kb on + strand, within HUW76_04755 at 958.949 kb on + strand, within HUW76_04755 at 959.020 kb on + strand, within HUW76_04755
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 956,204 + +1.6 956,204 + +2.1 956,207 + +1.5 956,424 - HUW76_04745 0.28 -0.0 956,424 - HUW76_04745 0.28 +1.1 956,431 + HUW76_04745 0.29 +0.2 956,460 + HUW76_04745 0.33 +1.1 956,460 + HUW76_04745 0.33 +0.7 956,460 + HUW76_04745 0.33 +1.1 956,468 - HUW76_04745 0.34 -0.5 956,476 - HUW76_04745 0.35 +0.5 956,579 - HUW76_04745 0.49 -0.7 956,713 + HUW76_04745 0.67 -0.7 956,713 + HUW76_04745 0.67 -0.5 956,924 + -0.0 956,926 + -0.0 956,926 + +0.3 956,926 + +0.7 956,926 + +0.8 956,926 + +1.2 956,926 + +0.3 956,926 + -0.2 956,926 + +0.3 956,933 - +0.5 956,934 - +1.1 956,934 - +0.9 956,934 - -0.5 956,934 - +0.8 956,936 + +2.1 957,315 + HUW76_04750 0.14 -1.2 957,315 + HUW76_04750 0.14 -0.1 957,333 + HUW76_04750 0.15 -0.1 957,512 + HUW76_04750 0.31 +0.9 958,154 + HUW76_04750 0.87 -1.1 958,154 + HUW76_04750 0.87 -1.4 958,155 + HUW76_04750 0.87 -0.1 958,322 + +0.9 958,327 + +0.4 958,327 + -2.3 958,335 - -1.1 958,470 + HUW76_04755 0.19 -0.6 958,518 + HUW76_04755 0.25 +0.4 958,561 + HUW76_04755 0.30 -0.6 958,568 + HUW76_04755 0.31 -1.1 958,696 + HUW76_04755 0.47 +0.9 958,725 + HUW76_04755 0.51 +0.3 958,727 + HUW76_04755 0.51 +2.8 958,735 + HUW76_04755 0.52 -3.8 958,744 + HUW76_04755 0.53 -0.1 958,812 + HUW76_04755 0.62 -0.5 958,840 + HUW76_04755 0.66 +2.7 958,897 + HUW76_04755 0.73 +0.4 958,897 + HUW76_04755 0.73 -0.9 958,939 + HUW76_04755 0.78 -1.1 958,949 + HUW76_04755 0.79 +0.1 959,020 + HUW76_04755 0.88 -0.5
Or see this region's nucleotide sequence