Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_04435 and HUW76_04440 overlap by 8 nucleotides HUW76_04440 and HUW76_04445 overlap by 1 nucleotides HUW76_04445 and HUW76_04450 are separated by 21 nucleotides HUW76_04450 and HUW76_04455 overlap by 1 nucleotides
HUW76_04435: HUW76_04435 - type II toxin-antitoxin system HicB family antitoxin, at 895,377 to 896,255
_04435
HUW76_04440: HUW76_04440 - phosphatidylinositol-4-phosphate 5-kinase, at 896,248 to 897,129
_04440
HUW76_04445: HUW76_04445 - rRNA pseudouridine synthase, at 897,129 to 897,809
_04445
HUW76_04450: HUW76_04450 - hypothetical protein, at 897,831 to 898,178
_04450
HUW76_04455: HUW76_04455 - elongation factor P maturation arginine rhamnosyltransferase EarP, at 898,178 to 899,230
_04455
Position (kb) 897
898 Strain fitness (log2 ratio) -2
-1
0
1
2 at 896.130 kb on - strand, within HUW76_04435 at 896.136 kb on + strand, within HUW76_04435 at 896.161 kb on - strand, within HUW76_04435 at 896.202 kb on + strand at 896.202 kb on + strand at 896.212 kb on + strand at 896.212 kb on + strand at 896.217 kb on - strand at 896.229 kb on + strand at 896.240 kb on + strand at 896.240 kb on + strand at 896.240 kb on + strand at 896.240 kb on + strand at 896.240 kb on + strand at 896.240 kb on + strand at 896.240 kb on + strand at 896.240 kb on + strand at 896.240 kb on + strand at 896.247 kb on - strand at 896.247 kb on - strand at 896.248 kb on - strand at 896.248 kb on - strand at 896.248 kb on - strand at 896.248 kb on - strand at 896.248 kb on - strand at 896.248 kb on - strand at 896.248 kb on - strand at 896.248 kb on - strand at 896.248 kb on - strand at 896.248 kb on - strand at 896.248 kb on - strand at 896.257 kb on + strand at 896.257 kb on + strand at 896.265 kb on - strand at 896.265 kb on - strand at 896.319 kb on + strand at 896.416 kb on - strand, within HUW76_04440 at 896.435 kb on + strand, within HUW76_04440 at 896.467 kb on - strand, within HUW76_04440 at 896.467 kb on - strand, within HUW76_04440 at 896.467 kb on - strand, within HUW76_04440 at 896.486 kb on + strand, within HUW76_04440 at 896.494 kb on + strand, within HUW76_04440 at 896.586 kb on - strand, within HUW76_04440 at 896.586 kb on - strand, within HUW76_04440 at 896.637 kb on + strand, within HUW76_04440 at 896.637 kb on + strand, within HUW76_04440 at 896.637 kb on + strand, within HUW76_04440 at 896.643 kb on + strand, within HUW76_04440 at 896.651 kb on - strand, within HUW76_04440 at 896.725 kb on - strand, within HUW76_04440 at 896.725 kb on - strand, within HUW76_04440 at 896.733 kb on - strand, within HUW76_04440 at 896.733 kb on - strand, within HUW76_04440 at 896.741 kb on - strand, within HUW76_04440 at 896.821 kb on + strand, within HUW76_04440 at 896.821 kb on + strand, within HUW76_04440 at 896.829 kb on - strand, within HUW76_04440 at 896.829 kb on - strand, within HUW76_04440 at 896.875 kb on - strand, within HUW76_04440 at 896.875 kb on - strand, within HUW76_04440 at 896.920 kb on + strand, within HUW76_04440 at 896.920 kb on + strand, within HUW76_04440 at 897.043 kb on + strand at 897.043 kb on + strand at 897.051 kb on - strand at 897.088 kb on + strand at 897.099 kb on + strand at 897.107 kb on - strand at 897.107 kb on - strand at 897.116 kb on + strand at 897.116 kb on + strand at 897.123 kb on + strand at 897.123 kb on + strand at 897.124 kb on - strand at 897.124 kb on - strand at 897.124 kb on - strand at 897.136 kb on - strand at 897.136 kb on - strand at 897.136 kb on - strand at 897.138 kb on + strand at 897.146 kb on - strand at 897.160 kb on + strand at 897.160 kb on + strand at 897.375 kb on + strand, within HUW76_04445 at 897.459 kb on - strand, within HUW76_04445 at 897.491 kb on + strand, within HUW76_04445 at 897.655 kb on + strand, within HUW76_04445 at 897.745 kb on + strand at 897.798 kb on - strand at 897.798 kb on - strand at 897.864 kb on + strand at 897.881 kb on + strand, within HUW76_04450 at 897.913 kb on - strand, within HUW76_04450 at 897.917 kb on - strand, within HUW76_04450 at 897.919 kb on - strand, within HUW76_04450 at 897.937 kb on + strand, within HUW76_04450 at 897.937 kb on + strand, within HUW76_04450 at 897.947 kb on - strand, within HUW76_04450 at 897.947 kb on - strand, within HUW76_04450 at 898.027 kb on - strand, within HUW76_04450 at 898.027 kb on - strand, within HUW76_04450 at 898.092 kb on + strand, within HUW76_04450 at 898.092 kb on + strand, within HUW76_04450 at 898.092 kb on + strand, within HUW76_04450 at 898.173 kb on + strand at 898.181 kb on - strand at 898.181 kb on - strand at 898.183 kb on + strand at 898.183 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 896,130 - HUW76_04435 0.86 +1.3 896,136 + HUW76_04435 0.86 +0.2 896,161 - HUW76_04435 0.89 +0.6 896,202 + -0.5 896,202 + -0.2 896,212 + -1.4 896,212 + +0.2 896,217 - +0.2 896,229 + +0.0 896,240 + -0.7 896,240 + -0.7 896,240 + -0.8 896,240 + -0.6 896,240 + -0.4 896,240 + -0.4 896,240 + +1.0 896,240 + +0.3 896,240 + +0.1 896,247 - -0.2 896,247 - +0.4 896,248 - -0.0 896,248 - +0.6 896,248 - +1.0 896,248 - +0.6 896,248 - -0.0 896,248 - +0.4 896,248 - +0.5 896,248 - +1.8 896,248 - +1.8 896,248 - +0.1 896,248 - -0.0 896,257 + -0.3 896,257 + -0.8 896,265 - +2.0 896,265 - -0.2 896,319 + -0.3 896,416 - HUW76_04440 0.19 +0.7 896,435 + HUW76_04440 0.21 -0.4 896,467 - HUW76_04440 0.25 -2.0 896,467 - HUW76_04440 0.25 +0.5 896,467 - HUW76_04440 0.25 +0.3 896,486 + HUW76_04440 0.27 -0.0 896,494 + HUW76_04440 0.28 -0.1 896,586 - HUW76_04440 0.38 +0.4 896,586 - HUW76_04440 0.38 +0.3 896,637 + HUW76_04440 0.44 -0.8 896,637 + HUW76_04440 0.44 -1.2 896,637 + HUW76_04440 0.44 +0.4 896,643 + HUW76_04440 0.45 +1.0 896,651 - HUW76_04440 0.46 +0.3 896,725 - HUW76_04440 0.54 +0.1 896,725 - HUW76_04440 0.54 -0.5 896,733 - HUW76_04440 0.55 -1.4 896,733 - HUW76_04440 0.55 -1.0 896,741 - HUW76_04440 0.56 +1.3 896,821 + HUW76_04440 0.65 -0.2 896,821 + HUW76_04440 0.65 -1.0 896,829 - HUW76_04440 0.66 +0.7 896,829 - HUW76_04440 0.66 +0.1 896,875 - HUW76_04440 0.71 +0.7 896,875 - HUW76_04440 0.71 +1.5 896,920 + HUW76_04440 0.76 -0.9 896,920 + HUW76_04440 0.76 +0.3 897,043 + +0.1 897,043 + -0.0 897,051 - +1.1 897,088 + -0.9 897,099 + -0.6 897,107 - +0.7 897,107 - +1.1 897,116 + -0.2 897,116 + -0.3 897,123 + -0.7 897,123 + +0.1 897,124 - +0.3 897,124 - +1.5 897,124 - -0.1 897,136 - +0.7 897,136 - -0.8 897,136 - -0.1 897,138 + -0.7 897,146 - -0.8 897,160 + +0.2 897,160 + +0.6 897,375 + HUW76_04445 0.36 -0.8 897,459 - HUW76_04445 0.48 -0.3 897,491 + HUW76_04445 0.53 -0.6 897,655 + HUW76_04445 0.77 -0.5 897,745 + +0.5 897,798 - -0.4 897,798 - +0.6 897,864 + -0.6 897,881 + HUW76_04450 0.14 -0.6 897,913 - HUW76_04450 0.24 +0.3 897,917 - HUW76_04450 0.25 -0.1 897,919 - HUW76_04450 0.25 +0.1 897,937 + HUW76_04450 0.30 -0.2 897,937 + HUW76_04450 0.30 -0.4 897,947 - HUW76_04450 0.33 +0.6 897,947 - HUW76_04450 0.33 -1.1 898,027 - HUW76_04450 0.56 +0.2 898,027 - HUW76_04450 0.56 -0.4 898,092 + HUW76_04450 0.75 -0.0 898,092 + HUW76_04450 0.75 -0.2 898,092 + HUW76_04450 0.75 +0.3 898,173 + -0.2 898,181 - -0.6 898,181 - +1.0 898,183 + -0.4 898,183 + -0.2
Or see this region's nucleotide sequence