Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04265

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04260 and HUW76_04265 are separated by 2 nucleotidesHUW76_04265 and HUW76_04270 are separated by 188 nucleotidesHUW76_04270 and HUW76_04275 are separated by 83 nucleotides HUW76_04260: HUW76_04260 - AAA family ATPase, at 854,548 to 855,810 _04260 HUW76_04265: HUW76_04265 - RloB domain-containing protein, at 855,813 to 856,454 _04265 HUW76_04270: HUW76_04270 - hypothetical protein, at 856,643 to 856,915 _04270 HUW76_04275: HUW76_04275 - hypothetical protein, at 856,999 to 857,751 _04275 Position (kb) 855 856 857Strain fitness (log2 ratio) -2 -1 0 1 2 3at 855.115 kb on - strand, within HUW76_04260at 855.115 kb on - strand, within HUW76_04260at 855.232 kb on - strand, within HUW76_04260at 855.359 kb on - strand, within HUW76_04260at 855.573 kb on - strand, within HUW76_04260at 855.605 kb on - strand, within HUW76_04260at 855.615 kb on - strand, within HUW76_04260at 855.630 kb on - strand, within HUW76_04260at 855.686 kb on + strandat 855.686 kb on + strandat 855.694 kb on - strandat 855.694 kb on - strandat 855.773 kb on - strandat 855.883 kb on + strand, within HUW76_04265at 855.945 kb on + strand, within HUW76_04265at 855.997 kb on - strand, within HUW76_04265at 856.049 kb on + strand, within HUW76_04265at 856.068 kb on + strand, within HUW76_04265at 856.128 kb on + strand, within HUW76_04265at 856.128 kb on + strand, within HUW76_04265at 856.135 kb on + strand, within HUW76_04265at 856.145 kb on + strand, within HUW76_04265at 856.145 kb on + strand, within HUW76_04265at 856.145 kb on + strand, within HUW76_04265at 856.145 kb on + strand, within HUW76_04265at 856.153 kb on - strand, within HUW76_04265at 856.153 kb on - strand, within HUW76_04265at 856.319 kb on + strand, within HUW76_04265at 856.319 kb on + strand, within HUW76_04265at 856.326 kb on + strand, within HUW76_04265at 856.327 kb on - strand, within HUW76_04265at 856.397 kb on + strandat 856.399 kb on + strandat 856.407 kb on - strandat 856.407 kb on - strandat 856.407 kb on - strandat 856.407 kb on - strandat 856.407 kb on - strandat 856.415 kb on - strandat 856.415 kb on - strandat 856.415 kb on - strandat 856.415 kb on - strandat 856.531 kb on + strandat 856.586 kb on - strandat 856.734 kb on + strand, within HUW76_04270at 856.734 kb on + strand, within HUW76_04270at 856.775 kb on - strand, within HUW76_04270at 856.851 kb on + strand, within HUW76_04270at 856.852 kb on - strand, within HUW76_04270at 856.858 kb on + strand, within HUW76_04270at 856.858 kb on + strand, within HUW76_04270at 856.981 kb on - strandat 856.981 kb on - strandat 856.981 kb on - strandat 856.981 kb on - strandat 856.981 kb on - strandat 856.981 kb on - strandat 857.131 kb on - strand, within HUW76_04275at 857.160 kb on - strand, within HUW76_04275at 857.160 kb on - strand, within HUW76_04275at 857.184 kb on + strand, within HUW76_04275at 857.200 kb on - strand, within HUW76_04275at 857.200 kb on - strand, within HUW76_04275at 857.202 kb on + strand, within HUW76_04275at 857.202 kb on + strand, within HUW76_04275at 857.272 kb on + strand, within HUW76_04275at 857.280 kb on - strand, within HUW76_04275at 857.280 kb on - strand, within HUW76_04275at 857.280 kb on - strand, within HUW76_04275at 857.287 kb on + strand, within HUW76_04275at 857.287 kb on + strand, within HUW76_04275at 857.349 kb on + strand, within HUW76_04275at 857.352 kb on + strand, within HUW76_04275at 857.352 kb on + strand, within HUW76_04275at 857.356 kb on - strand, within HUW76_04275at 857.433 kb on + strand, within HUW76_04275at 857.436 kb on + strand, within HUW76_04275at 857.441 kb on - strand, within HUW76_04275at 857.441 kb on - strand, within HUW76_04275at 857.446 kb on - strand, within HUW76_04275at 857.453 kb on + strand, within HUW76_04275

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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855,115 - HUW76_04260 0.45 +0.5
855,115 - HUW76_04260 0.45 -0.4
855,232 - HUW76_04260 0.54 -0.3
855,359 - HUW76_04260 0.64 +0.7
855,573 - HUW76_04260 0.81 -1.0
855,605 - HUW76_04260 0.84 +1.3
855,615 - HUW76_04260 0.84 +0.8
855,630 - HUW76_04260 0.86 +0.4
855,686 + -0.7
855,686 + -0.7
855,694 - -0.8
855,694 - +1.4
855,773 - +1.0
855,883 + HUW76_04265 0.11 -0.7
855,945 + HUW76_04265 0.21 +0.0
855,997 - HUW76_04265 0.29 -0.3
856,049 + HUW76_04265 0.37 -0.5
856,068 + HUW76_04265 0.40 -0.6
856,128 + HUW76_04265 0.49 -0.8
856,128 + HUW76_04265 0.49 -0.7
856,135 + HUW76_04265 0.50 -1.1
856,145 + HUW76_04265 0.52 -0.6
856,145 + HUW76_04265 0.52 -0.1
856,145 + HUW76_04265 0.52 -0.4
856,145 + HUW76_04265 0.52 -0.9
856,153 - HUW76_04265 0.53 +0.6
856,153 - HUW76_04265 0.53 +0.5
856,319 + HUW76_04265 0.79 -0.6
856,319 + HUW76_04265 0.79 -0.1
856,326 + HUW76_04265 0.80 -0.1
856,327 - HUW76_04265 0.80 -1.8
856,397 + -0.3
856,399 + -0.5
856,407 - +2.8
856,407 - -0.6
856,407 - +0.7
856,407 - -0.2
856,407 - -0.6
856,415 - -0.4
856,415 - +0.1
856,415 - -0.4
856,415 - -0.5
856,531 + +0.1
856,586 - -0.2
856,734 + HUW76_04270 0.33 +1.0
856,734 + HUW76_04270 0.33 +1.7
856,775 - HUW76_04270 0.48 -0.5
856,851 + HUW76_04270 0.76 +1.0
856,852 - HUW76_04270 0.77 -0.4
856,858 + HUW76_04270 0.79 +0.8
856,858 + HUW76_04270 0.79 +1.1
856,981 - -0.2
856,981 - -0.0
856,981 - -0.6
856,981 - -0.3
856,981 - -0.3
856,981 - -0.6
857,131 - HUW76_04275 0.18 -0.9
857,160 - HUW76_04275 0.21 -0.1
857,160 - HUW76_04275 0.21 -0.1
857,184 + HUW76_04275 0.25 -0.2
857,200 - HUW76_04275 0.27 -0.3
857,200 - HUW76_04275 0.27 -1.0
857,202 + HUW76_04275 0.27 +1.7
857,202 + HUW76_04275 0.27 +1.3
857,272 + HUW76_04275 0.36 +1.2
857,280 - HUW76_04275 0.37 +0.2
857,280 - HUW76_04275 0.37 -0.4
857,280 - HUW76_04275 0.37 -0.5
857,287 + HUW76_04275 0.38 -0.8
857,287 + HUW76_04275 0.38 +1.0
857,349 + HUW76_04275 0.46 -0.2
857,352 + HUW76_04275 0.47 +0.5
857,352 + HUW76_04275 0.47 +0.2
857,356 - HUW76_04275 0.47 -0.4
857,433 + HUW76_04275 0.58 -0.1
857,436 + HUW76_04275 0.58 +0.2
857,441 - HUW76_04275 0.59 -1.3
857,441 - HUW76_04275 0.59 -0.4
857,446 - HUW76_04275 0.59 -0.4
857,453 + HUW76_04275 0.60 -0.2

Or see this region's nucleotide sequence