Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_04005

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_04000 and HUW76_04005 are separated by 206 nucleotidesHUW76_04005 and HUW76_04010 are separated by 133 nucleotides HUW76_04000: HUW76_04000 - FTR1 family iron permease, at 804,156 to 805,472 _04000 HUW76_04005: HUW76_04005 - NCS2 family permease, at 805,679 to 807,025 _04005 HUW76_04010: HUW76_04010 - glycosyltransferase family 9 protein, at 807,159 to 808,298 _04010 Position (kb) 805 806 807 808Strain fitness (log2 ratio) -2 -1 0 1 2at 804.681 kb on - strand, within HUW76_04000at 804.681 kb on - strand, within HUW76_04000at 804.699 kb on - strand, within HUW76_04000at 804.720 kb on + strand, within HUW76_04000at 804.728 kb on - strand, within HUW76_04000at 804.728 kb on - strand, within HUW76_04000at 804.736 kb on + strand, within HUW76_04000at 804.765 kb on + strand, within HUW76_04000at 804.773 kb on - strand, within HUW76_04000at 804.773 kb on - strand, within HUW76_04000at 804.773 kb on - strand, within HUW76_04000at 804.785 kb on + strand, within HUW76_04000at 804.785 kb on + strand, within HUW76_04000at 804.793 kb on - strand, within HUW76_04000at 804.793 kb on - strand, within HUW76_04000at 804.793 kb on - strand, within HUW76_04000at 804.834 kb on + strand, within HUW76_04000at 804.852 kb on - strand, within HUW76_04000at 804.852 kb on - strand, within HUW76_04000at 804.871 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.942 kb on - strand, within HUW76_04000at 804.952 kb on - strand, within HUW76_04000at 804.952 kb on - strand, within HUW76_04000at 804.952 kb on - strand, within HUW76_04000at 804.952 kb on - strand, within HUW76_04000at 805.012 kb on - strand, within HUW76_04000at 805.017 kb on - strand, within HUW76_04000at 805.047 kb on - strand, within HUW76_04000at 805.081 kb on + strand, within HUW76_04000at 805.094 kb on + strand, within HUW76_04000at 805.102 kb on - strand, within HUW76_04000at 805.102 kb on - strand, within HUW76_04000at 805.124 kb on - strand, within HUW76_04000at 805.136 kb on - strand, within HUW76_04000at 805.244 kb on - strand, within HUW76_04000at 805.244 kb on - strand, within HUW76_04000at 805.262 kb on + strand, within HUW76_04000at 805.286 kb on - strand, within HUW76_04000at 805.286 kb on - strand, within HUW76_04000at 805.339 kb on + strand, within HUW76_04000at 805.339 kb on + strand, within HUW76_04000at 805.347 kb on - strandat 805.347 kb on - strandat 805.347 kb on - strandat 805.347 kb on - strandat 805.718 kb on + strandat 805.787 kb on + strandat 805.787 kb on + strandat 805.877 kb on + strand, within HUW76_04005at 805.919 kb on + strand, within HUW76_04005at 805.985 kb on + strand, within HUW76_04005at 806.076 kb on + strand, within HUW76_04005at 806.086 kb on + strand, within HUW76_04005at 806.086 kb on + strand, within HUW76_04005at 806.086 kb on + strand, within HUW76_04005at 806.094 kb on - strand, within HUW76_04005at 806.094 kb on - strand, within HUW76_04005at 806.097 kb on - strand, within HUW76_04005at 806.125 kb on - strand, within HUW76_04005at 806.125 kb on - strand, within HUW76_04005at 806.148 kb on - strand, within HUW76_04005at 806.148 kb on - strand, within HUW76_04005at 806.156 kb on - strand, within HUW76_04005at 806.213 kb on + strand, within HUW76_04005at 806.281 kb on + strand, within HUW76_04005at 806.281 kb on + strand, within HUW76_04005at 806.281 kb on + strand, within HUW76_04005at 806.289 kb on - strand, within HUW76_04005at 806.289 kb on - strand, within HUW76_04005at 806.289 kb on - strand, within HUW76_04005at 806.425 kb on + strand, within HUW76_04005at 806.426 kb on + strand, within HUW76_04005at 806.571 kb on + strand, within HUW76_04005at 806.604 kb on + strand, within HUW76_04005at 806.686 kb on + strand, within HUW76_04005at 806.765 kb on + strand, within HUW76_04005at 806.765 kb on + strand, within HUW76_04005at 806.765 kb on + strand, within HUW76_04005at 806.784 kb on + strand, within HUW76_04005at 806.784 kb on + strand, within HUW76_04005at 806.787 kb on + strand, within HUW76_04005at 806.795 kb on - strand, within HUW76_04005at 806.964 kb on + strandat 806.970 kb on + strandat 807.217 kb on + strandat 807.225 kb on - strandat 807.306 kb on - strand, within HUW76_04010at 807.431 kb on + strand, within HUW76_04010at 807.443 kb on + strand, within HUW76_04010at 807.443 kb on + strand, within HUW76_04010at 807.501 kb on + strand, within HUW76_04010at 807.501 kb on + strand, within HUW76_04010at 807.508 kb on - strand, within HUW76_04010at 807.508 kb on - strand, within HUW76_04010at 807.548 kb on - strand, within HUW76_04010at 807.559 kb on + strand, within HUW76_04010at 807.559 kb on + strand, within HUW76_04010at 807.559 kb on + strand, within HUW76_04010at 807.559 kb on + strand, within HUW76_04010at 807.559 kb on + strand, within HUW76_04010at 807.567 kb on - strand, within HUW76_04010at 807.581 kb on - strand, within HUW76_04010at 807.581 kb on - strand, within HUW76_04010at 807.588 kb on + strand, within HUW76_04010at 807.588 kb on + strand, within HUW76_04010at 807.618 kb on - strand, within HUW76_04010at 807.618 kb on - strand, within HUW76_04010at 807.648 kb on - strand, within HUW76_04010at 807.677 kb on - strand, within HUW76_04010at 807.836 kb on + strand, within HUW76_04010at 807.870 kb on - strand, within HUW76_04010at 807.904 kb on - strand, within HUW76_04010at 807.911 kb on + strand, within HUW76_04010

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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804,681 - HUW76_04000 0.40 +0.3
804,681 - HUW76_04000 0.40 +0.7
804,699 - HUW76_04000 0.41 -0.1
804,720 + HUW76_04000 0.43 +2.3
804,728 - HUW76_04000 0.43 +1.0
804,728 - HUW76_04000 0.43 +0.3
804,736 + HUW76_04000 0.44 +0.4
804,765 + HUW76_04000 0.46 -0.3
804,773 - HUW76_04000 0.47 +0.2
804,773 - HUW76_04000 0.47 -0.0
804,773 - HUW76_04000 0.47 -0.6
804,785 + HUW76_04000 0.48 +1.1
804,785 + HUW76_04000 0.48 +0.3
804,793 - HUW76_04000 0.48 -0.1
804,793 - HUW76_04000 0.48 -0.2
804,793 - HUW76_04000 0.48 +0.4
804,834 + HUW76_04000 0.51 +1.4
804,852 - HUW76_04000 0.53 -0.1
804,852 - HUW76_04000 0.53 -0.6
804,871 - HUW76_04000 0.54 +1.1
804,942 - HUW76_04000 0.60 -0.1
804,942 - HUW76_04000 0.60 -0.2
804,942 - HUW76_04000 0.60 -0.1
804,942 - HUW76_04000 0.60 -0.2
804,942 - HUW76_04000 0.60 +0.3
804,942 - HUW76_04000 0.60 -0.6
804,942 - HUW76_04000 0.60 +0.5
804,942 - HUW76_04000 0.60 -0.1
804,952 - HUW76_04000 0.60 +0.9
804,952 - HUW76_04000 0.60 +0.1
804,952 - HUW76_04000 0.60 +0.9
804,952 - HUW76_04000 0.60 +0.4
805,012 - HUW76_04000 0.65 +1.5
805,017 - HUW76_04000 0.65 +0.3
805,047 - HUW76_04000 0.68 +0.4
805,081 + HUW76_04000 0.70 +1.8
805,094 + HUW76_04000 0.71 +1.2
805,102 - HUW76_04000 0.72 -0.1
805,102 - HUW76_04000 0.72 +0.3
805,124 - HUW76_04000 0.74 -0.1
805,136 - HUW76_04000 0.74 +0.8
805,244 - HUW76_04000 0.83 +0.3
805,244 - HUW76_04000 0.83 -0.7
805,262 + HUW76_04000 0.84 +0.3
805,286 - HUW76_04000 0.86 -0.2
805,286 - HUW76_04000 0.86 -0.9
805,339 + HUW76_04000 0.90 +1.4
805,339 + HUW76_04000 0.90 +0.3
805,347 - -1.0
805,347 - +0.5
805,347 - +0.2
805,347 - -0.1
805,718 + +0.5
805,787 + -0.9
805,787 + +0.5
805,877 + HUW76_04005 0.15 -0.9
805,919 + HUW76_04005 0.18 -0.2
805,985 + HUW76_04005 0.23 +0.4
806,076 + HUW76_04005 0.29 -2.2
806,086 + HUW76_04005 0.30 -0.5
806,086 + HUW76_04005 0.30 +0.8
806,086 + HUW76_04005 0.30 +0.2
806,094 - HUW76_04005 0.31 +1.5
806,094 - HUW76_04005 0.31 +1.5
806,097 - HUW76_04005 0.31 +0.7
806,125 - HUW76_04005 0.33 -0.4
806,125 - HUW76_04005 0.33 +1.4
806,148 - HUW76_04005 0.35 +0.3
806,148 - HUW76_04005 0.35 +2.2
806,156 - HUW76_04005 0.35 +0.4
806,213 + HUW76_04005 0.40 -1.9
806,281 + HUW76_04005 0.45 +0.9
806,281 + HUW76_04005 0.45 -0.4
806,281 + HUW76_04005 0.45 -1.6
806,289 - HUW76_04005 0.45 -0.1
806,289 - HUW76_04005 0.45 +0.3
806,289 - HUW76_04005 0.45 +0.7
806,425 + HUW76_04005 0.55 -0.5
806,426 + HUW76_04005 0.55 -0.6
806,571 + HUW76_04005 0.66 -0.3
806,604 + HUW76_04005 0.69 -0.1
806,686 + HUW76_04005 0.75 +1.5
806,765 + HUW76_04005 0.81 +0.3
806,765 + HUW76_04005 0.81 -0.8
806,765 + HUW76_04005 0.81 -0.2
806,784 + HUW76_04005 0.82 -1.1
806,784 + HUW76_04005 0.82 -0.4
806,787 + HUW76_04005 0.82 -1.4
806,795 - HUW76_04005 0.83 -0.6
806,964 + -0.9
806,970 + +0.1
807,217 + +0.1
807,225 - +1.3
807,306 - HUW76_04010 0.13 +0.9
807,431 + HUW76_04010 0.24 +1.2
807,443 + HUW76_04010 0.25 -0.2
807,443 + HUW76_04010 0.25 +0.4
807,501 + HUW76_04010 0.30 +0.2
807,501 + HUW76_04010 0.30 +0.9
807,508 - HUW76_04010 0.31 +0.9
807,508 - HUW76_04010 0.31 +2.0
807,548 - HUW76_04010 0.34 -0.5
807,559 + HUW76_04010 0.35 -1.5
807,559 + HUW76_04010 0.35 +0.0
807,559 + HUW76_04010 0.35 -0.1
807,559 + HUW76_04010 0.35 +0.5
807,559 + HUW76_04010 0.35 -0.7
807,567 - HUW76_04010 0.36 +0.1
807,581 - HUW76_04010 0.37 -0.1
807,581 - HUW76_04010 0.37 +0.2
807,588 + HUW76_04010 0.38 -0.3
807,588 + HUW76_04010 0.38 +0.4
807,618 - HUW76_04010 0.40 -0.2
807,618 - HUW76_04010 0.40 +2.4
807,648 - HUW76_04010 0.43 +1.1
807,677 - HUW76_04010 0.45 +0.9
807,836 + HUW76_04010 0.59 -0.5
807,870 - HUW76_04010 0.62 +1.5
807,904 - HUW76_04010 0.65 +1.9
807,911 + HUW76_04010 0.66 +0.3

Or see this region's nucleotide sequence