Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03885

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03880 and HUW76_03885 are separated by 308 nucleotidesHUW76_03885 and HUW76_03890 are separated by 21 nucleotidesHUW76_03890 and HUW76_03895 are separated by 194 nucleotides HUW76_03880: HUW76_03880 - efflux RND transporter periplasmic adaptor subunit, at 779,720 to 780,829 _03880 HUW76_03885: HUW76_03885 - TolC family protein, at 781,138 to 782,409 _03885 HUW76_03890: HUW76_03890 - TetR/AcrR family transcriptional regulator, at 782,431 to 783,066 _03890 HUW76_03895: HUW76_03895 - signal peptide peptidase SppA, at 783,261 to 784,997 _03895 Position (kb) 781 782 783Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 780.277 kb on + strand, within HUW76_03880at 780.285 kb on - strand, within HUW76_03880at 780.285 kb on - strand, within HUW76_03880at 780.288 kb on + strand, within HUW76_03880at 780.288 kb on + strand, within HUW76_03880at 780.295 kb on - strand, within HUW76_03880at 780.299 kb on + strand, within HUW76_03880at 780.308 kb on + strand, within HUW76_03880at 780.316 kb on - strand, within HUW76_03880at 780.316 kb on - strand, within HUW76_03880at 780.328 kb on - strand, within HUW76_03880at 780.328 kb on - strand, within HUW76_03880at 780.328 kb on - strand, within HUW76_03880at 780.338 kb on - strand, within HUW76_03880at 780.340 kb on + strand, within HUW76_03880at 780.363 kb on + strand, within HUW76_03880at 780.364 kb on + strand, within HUW76_03880at 780.364 kb on + strand, within HUW76_03880at 780.365 kb on + strand, within HUW76_03880at 780.371 kb on - strand, within HUW76_03880at 780.371 kb on - strand, within HUW76_03880at 780.423 kb on + strand, within HUW76_03880at 780.423 kb on + strand, within HUW76_03880at 780.591 kb on + strand, within HUW76_03880at 780.591 kb on + strand, within HUW76_03880at 780.591 kb on + strand, within HUW76_03880at 780.591 kb on + strand, within HUW76_03880at 780.598 kb on - strand, within HUW76_03880at 780.598 kb on - strand, within HUW76_03880at 780.604 kb on - strand, within HUW76_03880at 780.739 kb on + strandat 781.024 kb on + strandat 781.024 kb on + strandat 781.144 kb on + strandat 781.144 kb on + strandat 781.151 kb on + strandat 781.152 kb on + strandat 781.161 kb on - strandat 781.161 kb on - strandat 781.177 kb on - strandat 781.192 kb on - strandat 781.192 kb on - strandat 781.205 kb on + strandat 781.205 kb on + strandat 781.213 kb on - strandat 781.260 kb on + strandat 781.316 kb on + strand, within HUW76_03885at 781.316 kb on + strand, within HUW76_03885at 781.324 kb on - strand, within HUW76_03885at 781.324 kb on - strand, within HUW76_03885at 781.324 kb on - strand, within HUW76_03885at 781.324 kb on - strand, within HUW76_03885at 781.324 kb on - strand, within HUW76_03885at 781.324 kb on - strand, within HUW76_03885at 781.348 kb on + strand, within HUW76_03885at 781.355 kb on + strand, within HUW76_03885at 781.362 kb on + strand, within HUW76_03885at 781.362 kb on + strand, within HUW76_03885at 781.363 kb on - strand, within HUW76_03885at 781.370 kb on + strand, within HUW76_03885at 781.446 kb on + strand, within HUW76_03885at 781.446 kb on + strand, within HUW76_03885at 781.446 kb on + strand, within HUW76_03885at 781.456 kb on + strand, within HUW76_03885at 781.456 kb on + strand, within HUW76_03885at 781.456 kb on - strand, within HUW76_03885at 781.456 kb on - strand, within HUW76_03885at 781.464 kb on - strand, within HUW76_03885at 781.464 kb on - strand, within HUW76_03885at 781.464 kb on - strand, within HUW76_03885at 781.502 kb on - strand, within HUW76_03885at 781.502 kb on - strand, within HUW76_03885at 781.502 kb on - strand, within HUW76_03885at 781.502 kb on - strand, within HUW76_03885at 781.531 kb on - strand, within HUW76_03885at 781.554 kb on - strand, within HUW76_03885at 781.574 kb on + strand, within HUW76_03885at 781.576 kb on - strand, within HUW76_03885at 781.576 kb on - strand, within HUW76_03885at 781.608 kb on + strand, within HUW76_03885at 781.680 kb on + strand, within HUW76_03885at 781.728 kb on + strand, within HUW76_03885at 781.728 kb on + strand, within HUW76_03885at 781.736 kb on - strand, within HUW76_03885at 781.736 kb on - strand, within HUW76_03885at 781.736 kb on - strand, within HUW76_03885at 781.736 kb on - strand, within HUW76_03885at 781.744 kb on + strand, within HUW76_03885at 781.744 kb on + strand, within HUW76_03885at 781.767 kb on + strand, within HUW76_03885at 781.767 kb on + strand, within HUW76_03885at 781.808 kb on + strand, within HUW76_03885at 781.808 kb on + strand, within HUW76_03885at 781.813 kb on - strand, within HUW76_03885at 781.887 kb on + strand, within HUW76_03885at 781.947 kb on + strand, within HUW76_03885at 781.947 kb on + strand, within HUW76_03885at 781.955 kb on - strand, within HUW76_03885at 781.955 kb on - strand, within HUW76_03885at 781.955 kb on - strand, within HUW76_03885at 782.072 kb on - strand, within HUW76_03885at 782.111 kb on + strand, within HUW76_03885at 782.111 kb on + strand, within HUW76_03885at 782.133 kb on + strand, within HUW76_03885at 782.134 kb on + strand, within HUW76_03885at 782.134 kb on + strand, within HUW76_03885at 782.169 kb on - strand, within HUW76_03885at 782.199 kb on + strand, within HUW76_03885at 782.207 kb on - strand, within HUW76_03885at 782.212 kb on - strand, within HUW76_03885at 782.214 kb on + strand, within HUW76_03885at 782.214 kb on + strand, within HUW76_03885at 782.214 kb on + strand, within HUW76_03885at 782.214 kb on + strand, within HUW76_03885at 782.214 kb on + strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.222 kb on - strand, within HUW76_03885at 782.231 kb on - strand, within HUW76_03885at 782.232 kb on - strand, within HUW76_03885at 782.232 kb on - strand, within HUW76_03885at 782.232 kb on - strand, within HUW76_03885at 782.233 kb on + strand, within HUW76_03885at 782.241 kb on - strand, within HUW76_03885at 782.279 kb on + strand, within HUW76_03885at 782.340 kb on + strandat 782.347 kb on + strandat 782.383 kb on + strandat 782.401 kb on - strandat 782.419 kb on - strandat 782.419 kb on - strandat 782.512 kb on - strand, within HUW76_03890at 782.543 kb on - strand, within HUW76_03890at 782.543 kb on - strand, within HUW76_03890at 782.543 kb on - strand, within HUW76_03890at 782.577 kb on + strand, within HUW76_03890at 782.577 kb on + strand, within HUW76_03890at 782.642 kb on + strand, within HUW76_03890at 782.642 kb on + strand, within HUW76_03890at 782.642 kb on + strand, within HUW76_03890at 782.650 kb on - strand, within HUW76_03890at 782.650 kb on - strand, within HUW76_03890at 782.737 kb on - strand, within HUW76_03890at 782.737 kb on - strand, within HUW76_03890at 782.761 kb on - strand, within HUW76_03890at 782.776 kb on - strand, within HUW76_03890at 782.776 kb on - strand, within HUW76_03890at 782.809 kb on + strand, within HUW76_03890at 782.941 kb on + strand, within HUW76_03890at 782.941 kb on + strand, within HUW76_03890at 782.961 kb on + strand, within HUW76_03890at 782.995 kb on + strand, within HUW76_03890at 783.016 kb on + strandat 783.115 kb on - strandat 783.115 kb on - strandat 783.115 kb on - strandat 783.267 kb on + strandat 783.288 kb on + strandat 783.288 kb on + strandat 783.288 kb on + strandat 783.296 kb on - strandat 783.346 kb on + strandat 783.354 kb on - strandat 783.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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780,277 + HUW76_03880 0.50 +0.5
780,285 - HUW76_03880 0.51 -0.0
780,285 - HUW76_03880 0.51 -0.8
780,288 + HUW76_03880 0.51 +0.4
780,288 + HUW76_03880 0.51 -0.4
780,295 - HUW76_03880 0.52 -0.5
780,299 + HUW76_03880 0.52 -0.4
780,308 + HUW76_03880 0.53 +3.8
780,316 - HUW76_03880 0.54 -0.7
780,316 - HUW76_03880 0.54 -0.3
780,328 - HUW76_03880 0.55 -0.4
780,328 - HUW76_03880 0.55 -0.5
780,328 - HUW76_03880 0.55 -0.6
780,338 - HUW76_03880 0.56 -0.7
780,340 + HUW76_03880 0.56 -0.4
780,363 + HUW76_03880 0.58 -0.2
780,364 + HUW76_03880 0.58 -0.2
780,364 + HUW76_03880 0.58 -0.6
780,365 + HUW76_03880 0.58 +0.0
780,371 - HUW76_03880 0.59 -0.9
780,371 - HUW76_03880 0.59 -1.3
780,423 + HUW76_03880 0.63 +0.3
780,423 + HUW76_03880 0.63 -1.3
780,591 + HUW76_03880 0.78 +0.8
780,591 + HUW76_03880 0.78 -0.8
780,591 + HUW76_03880 0.78 +0.3
780,591 + HUW76_03880 0.78 +0.0
780,598 - HUW76_03880 0.79 -1.1
780,598 - HUW76_03880 0.79 -1.5
780,604 - HUW76_03880 0.80 -0.6
780,739 + +0.4
781,024 + -0.1
781,024 + +1.4
781,144 + +1.4
781,144 + -1.1
781,151 + +0.3
781,152 + +0.3
781,161 - +0.1
781,161 - -0.8
781,177 - -0.6
781,192 - +0.0
781,192 - +0.3
781,205 + +0.3
781,205 + -0.3
781,213 - -0.2
781,260 + +0.3
781,316 + HUW76_03885 0.14 -0.2
781,316 + HUW76_03885 0.14 +0.6
781,324 - HUW76_03885 0.15 -0.6
781,324 - HUW76_03885 0.15 +0.4
781,324 - HUW76_03885 0.15 -0.1
781,324 - HUW76_03885 0.15 -0.3
781,324 - HUW76_03885 0.15 -0.4
781,324 - HUW76_03885 0.15 +0.7
781,348 + HUW76_03885 0.17 +0.8
781,355 + HUW76_03885 0.17 +0.1
781,362 + HUW76_03885 0.18 -0.6
781,362 + HUW76_03885 0.18 +0.6
781,363 - HUW76_03885 0.18 +0.0
781,370 + HUW76_03885 0.18 +0.6
781,446 + HUW76_03885 0.24 +1.1
781,446 + HUW76_03885 0.24 +2.5
781,446 + HUW76_03885 0.24 +0.8
781,456 + HUW76_03885 0.25 -0.1
781,456 + HUW76_03885 0.25 +2.4
781,456 - HUW76_03885 0.25 +0.0
781,456 - HUW76_03885 0.25 +1.0
781,464 - HUW76_03885 0.26 +0.1
781,464 - HUW76_03885 0.26 +0.4
781,464 - HUW76_03885 0.26 -0.0
781,502 - HUW76_03885 0.29 -1.2
781,502 - HUW76_03885 0.29 -0.3
781,502 - HUW76_03885 0.29 -1.5
781,502 - HUW76_03885 0.29 -0.3
781,531 - HUW76_03885 0.31 -0.5
781,554 - HUW76_03885 0.33 -0.4
781,574 + HUW76_03885 0.34 +0.0
781,576 - HUW76_03885 0.34 -0.0
781,576 - HUW76_03885 0.34 -2.1
781,608 + HUW76_03885 0.37 +0.5
781,680 + HUW76_03885 0.43 -0.0
781,728 + HUW76_03885 0.46 +0.1
781,728 + HUW76_03885 0.46 +0.4
781,736 - HUW76_03885 0.47 +0.7
781,736 - HUW76_03885 0.47 -0.3
781,736 - HUW76_03885 0.47 -0.4
781,736 - HUW76_03885 0.47 +0.1
781,744 + HUW76_03885 0.48 +0.0
781,744 + HUW76_03885 0.48 -0.3
781,767 + HUW76_03885 0.49 +0.8
781,767 + HUW76_03885 0.49 +0.9
781,808 + HUW76_03885 0.53 -0.1
781,808 + HUW76_03885 0.53 -1.1
781,813 - HUW76_03885 0.53 +0.0
781,887 + HUW76_03885 0.59 +0.0
781,947 + HUW76_03885 0.64 +0.5
781,947 + HUW76_03885 0.64 +0.3
781,955 - HUW76_03885 0.64 -0.5
781,955 - HUW76_03885 0.64 -0.4
781,955 - HUW76_03885 0.64 -0.2
782,072 - HUW76_03885 0.73 +0.0
782,111 + HUW76_03885 0.76 +0.2
782,111 + HUW76_03885 0.76 +0.1
782,133 + HUW76_03885 0.78 +0.0
782,134 + HUW76_03885 0.78 +0.9
782,134 + HUW76_03885 0.78 -0.4
782,169 - HUW76_03885 0.81 -0.2
782,199 + HUW76_03885 0.83 -0.5
782,207 - HUW76_03885 0.84 -0.1
782,212 - HUW76_03885 0.84 -0.5
782,214 + HUW76_03885 0.85 +1.6
782,214 + HUW76_03885 0.85 +0.1
782,214 + HUW76_03885 0.85 -0.1
782,214 + HUW76_03885 0.85 +1.7
782,214 + HUW76_03885 0.85 -0.4
782,222 - HUW76_03885 0.85 -0.5
782,222 - HUW76_03885 0.85 -0.1
782,222 - HUW76_03885 0.85 -0.4
782,222 - HUW76_03885 0.85 -0.2
782,222 - HUW76_03885 0.85 -0.7
782,222 - HUW76_03885 0.85 -0.1
782,222 - HUW76_03885 0.85 -0.3
782,222 - HUW76_03885 0.85 -0.8
782,222 - HUW76_03885 0.85 -0.2
782,222 - HUW76_03885 0.85 +0.3
782,231 - HUW76_03885 0.86 +0.1
782,232 - HUW76_03885 0.86 -0.5
782,232 - HUW76_03885 0.86 -0.5
782,232 - HUW76_03885 0.86 -0.3
782,233 + HUW76_03885 0.86 +2.4
782,241 - HUW76_03885 0.87 -0.2
782,279 + HUW76_03885 0.90 +0.2
782,340 + +1.8
782,347 + +0.8
782,383 + +1.5
782,401 - -0.8
782,419 - -0.1
782,419 - -0.1
782,512 - HUW76_03890 0.13 -0.0
782,543 - HUW76_03890 0.18 +0.8
782,543 - HUW76_03890 0.18 +1.9
782,543 - HUW76_03890 0.18 +0.4
782,577 + HUW76_03890 0.23 +0.8
782,577 + HUW76_03890 0.23 +0.4
782,642 + HUW76_03890 0.33 +0.9
782,642 + HUW76_03890 0.33 +0.6
782,642 + HUW76_03890 0.33 +1.1
782,650 - HUW76_03890 0.34 +0.2
782,650 - HUW76_03890 0.34 +0.3
782,737 - HUW76_03890 0.48 -3.0
782,737 - HUW76_03890 0.48 +0.1
782,761 - HUW76_03890 0.52 -0.3
782,776 - HUW76_03890 0.54 -0.7
782,776 - HUW76_03890 0.54 +1.6
782,809 + HUW76_03890 0.59 +0.9
782,941 + HUW76_03890 0.80 +0.2
782,941 + HUW76_03890 0.80 -0.4
782,961 + HUW76_03890 0.83 +0.5
782,995 + HUW76_03890 0.89 -1.4
783,016 + +1.2
783,115 - +1.6
783,115 - -0.4
783,115 - +0.7
783,267 + -0.2
783,288 + -0.5
783,288 + +0.1
783,288 + +0.1
783,296 - +0.7
783,346 + +0.1
783,354 - +0.1
783,403 - +0.2

Or see this region's nucleotide sequence