Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03440

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03435 and HUW76_03440 are separated by 8 nucleotidesHUW76_03440 and HUW76_03445 are separated by 2 nucleotides HUW76_03435: HUW76_03435 - baseplate J/gp47 family protein, at 693,260 to 694,357 _03435 HUW76_03440: HUW76_03440 - hypothetical protein, at 694,366 to 694,986 _03440 HUW76_03445: HUW76_03445 - hypothetical protein, at 694,989 to 695,768 _03445 Position (kb) 694 695Strain fitness (log2 ratio) -1 0 1 2 3 4at 693.380 kb on - strand, within HUW76_03435at 693.451 kb on + strand, within HUW76_03435at 693.461 kb on + strand, within HUW76_03435at 693.468 kb on + strand, within HUW76_03435at 693.469 kb on - strand, within HUW76_03435at 693.473 kb on + strand, within HUW76_03435at 693.476 kb on - strand, within HUW76_03435at 693.671 kb on - strand, within HUW76_03435at 693.671 kb on - strand, within HUW76_03435at 693.673 kb on + strand, within HUW76_03435at 693.679 kb on - strand, within HUW76_03435at 693.737 kb on - strand, within HUW76_03435at 693.749 kb on - strand, within HUW76_03435at 693.784 kb on - strand, within HUW76_03435at 693.857 kb on + strand, within HUW76_03435at 693.857 kb on + strand, within HUW76_03435at 693.965 kb on + strand, within HUW76_03435at 693.965 kb on + strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 693.973 kb on - strand, within HUW76_03435at 694.013 kb on + strand, within HUW76_03435at 694.021 kb on - strand, within HUW76_03435at 694.021 kb on - strand, within HUW76_03435at 694.021 kb on - strand, within HUW76_03435at 694.198 kb on + strand, within HUW76_03435at 694.199 kb on - strand, within HUW76_03435at 694.221 kb on - strand, within HUW76_03435at 694.225 kb on + strand, within HUW76_03435at 694.243 kb on - strand, within HUW76_03435at 694.261 kb on - strandat 694.262 kb on - strandat 694.262 kb on - strandat 694.291 kb on + strandat 694.291 kb on + strandat 694.362 kb on + strandat 694.362 kb on + strandat 694.366 kb on - strandat 694.366 kb on - strandat 694.381 kb on + strandat 694.381 kb on + strandat 694.389 kb on - strandat 694.393 kb on + strandat 694.393 kb on + strandat 694.395 kb on - strandat 694.401 kb on - strandat 694.401 kb on - strandat 694.495 kb on - strand, within HUW76_03440at 694.570 kb on + strand, within HUW76_03440at 694.578 kb on + strand, within HUW76_03440at 694.578 kb on - strand, within HUW76_03440at 694.584 kb on - strand, within HUW76_03440at 694.586 kb on - strand, within HUW76_03440at 694.627 kb on - strand, within HUW76_03440at 694.627 kb on - strand, within HUW76_03440at 694.631 kb on - strand, within HUW76_03440at 694.631 kb on - strand, within HUW76_03440at 694.735 kb on - strand, within HUW76_03440at 694.850 kb on - strand, within HUW76_03440at 694.850 kb on - strand, within HUW76_03440at 694.917 kb on + strand, within HUW76_03440at 695.068 kb on + strand, within HUW76_03445at 695.153 kb on + strand, within HUW76_03445at 695.204 kb on - strand, within HUW76_03445at 695.209 kb on - strand, within HUW76_03445at 695.211 kb on + strand, within HUW76_03445at 695.220 kb on - strand, within HUW76_03445at 695.314 kb on - strand, within HUW76_03445at 695.423 kb on + strand, within HUW76_03445at 695.443 kb on + strand, within HUW76_03445at 695.443 kb on + strand, within HUW76_03445at 695.504 kb on + strand, within HUW76_03445at 695.597 kb on - strand, within HUW76_03445at 695.597 kb on - strand, within HUW76_03445at 695.632 kb on - strand, within HUW76_03445at 695.645 kb on - strand, within HUW76_03445at 695.676 kb on - strand, within HUW76_03445at 695.676 kb on - strand, within HUW76_03445at 695.727 kb on + strandat 695.727 kb on + strandat 695.735 kb on - strandat 695.753 kb on - strandat 695.753 kb on - strandat 695.781 kb on - strandat 695.783 kb on + strandat 695.783 kb on + strandat 695.792 kb on + strandat 695.807 kb on - strandat 695.869 kb on + strandat 695.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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693,380 - HUW76_03435 0.11 +0.2
693,451 + HUW76_03435 0.17 +2.4
693,461 + HUW76_03435 0.18 +3.5
693,468 + HUW76_03435 0.19 +1.5
693,469 - HUW76_03435 0.19 +0.1
693,473 + HUW76_03435 0.19 +1.4
693,476 - HUW76_03435 0.20 +1.9
693,671 - HUW76_03435 0.37 -0.1
693,671 - HUW76_03435 0.37 +0.9
693,673 + HUW76_03435 0.38 +0.6
693,679 - HUW76_03435 0.38 +1.8
693,737 - HUW76_03435 0.43 +1.9
693,749 - HUW76_03435 0.45 +0.3
693,784 - HUW76_03435 0.48 -0.2
693,857 + HUW76_03435 0.54 +1.9
693,857 + HUW76_03435 0.54 +4.1
693,965 + HUW76_03435 0.64 +3.2
693,965 + HUW76_03435 0.64 +1.9
693,973 - HUW76_03435 0.65 +0.1
693,973 - HUW76_03435 0.65 +0.7
693,973 - HUW76_03435 0.65 +1.6
693,973 - HUW76_03435 0.65 +0.6
693,973 - HUW76_03435 0.65 +0.2
693,973 - HUW76_03435 0.65 +1.1
693,973 - HUW76_03435 0.65 +0.4
694,013 + HUW76_03435 0.69 +2.3
694,021 - HUW76_03435 0.69 +1.1
694,021 - HUW76_03435 0.69 +0.8
694,021 - HUW76_03435 0.69 +1.7
694,198 + HUW76_03435 0.85 +1.6
694,199 - HUW76_03435 0.86 -0.4
694,221 - HUW76_03435 0.88 +1.3
694,225 + HUW76_03435 0.88 +1.9
694,243 - HUW76_03435 0.90 -0.4
694,261 - -1.0
694,262 - -0.7
694,262 - -0.1
694,291 + +1.7
694,291 + +0.9
694,362 + +2.6
694,362 + +2.4
694,366 - +0.1
694,366 - -0.9
694,381 + +1.4
694,381 + +2.5
694,389 - +1.6
694,393 + +1.3
694,393 + +1.1
694,395 - +0.7
694,401 - +1.0
694,401 - -0.3
694,495 - HUW76_03440 0.21 -0.1
694,570 + HUW76_03440 0.33 +1.7
694,578 + HUW76_03440 0.34 +0.2
694,578 - HUW76_03440 0.34 -0.8
694,584 - HUW76_03440 0.35 +1.9
694,586 - HUW76_03440 0.35 +1.3
694,627 - HUW76_03440 0.42 -0.2
694,627 - HUW76_03440 0.42 +0.2
694,631 - HUW76_03440 0.43 +2.6
694,631 - HUW76_03440 0.43 +1.3
694,735 - HUW76_03440 0.59 +0.2
694,850 - HUW76_03440 0.78 +1.2
694,850 - HUW76_03440 0.78 +1.2
694,917 + HUW76_03440 0.89 +2.6
695,068 + HUW76_03445 0.10 +1.4
695,153 + HUW76_03445 0.21 +2.9
695,204 - HUW76_03445 0.28 +0.5
695,209 - HUW76_03445 0.28 +1.9
695,211 + HUW76_03445 0.28 +1.5
695,220 - HUW76_03445 0.30 +0.3
695,314 - HUW76_03445 0.42 +0.2
695,423 + HUW76_03445 0.56 +2.3
695,443 + HUW76_03445 0.58 +2.5
695,443 + HUW76_03445 0.58 +3.2
695,504 + HUW76_03445 0.66 +1.3
695,597 - HUW76_03445 0.78 -0.5
695,597 - HUW76_03445 0.78 +1.4
695,632 - HUW76_03445 0.82 +0.2
695,645 - HUW76_03445 0.84 +0.5
695,676 - HUW76_03445 0.88 +0.3
695,676 - HUW76_03445 0.88 +0.0
695,727 + +1.1
695,727 + +1.9
695,735 - +0.2
695,753 - +1.4
695,753 - +0.8
695,781 - +0.3
695,783 + +2.5
695,783 + +2.1
695,792 + +1.3
695,807 - -0.3
695,869 + +2.0
695,934 - +0.9

Or see this region's nucleotide sequence