Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_03030 and HUW76_03035 overlap by 14 nucleotides HUW76_03035 and HUW76_03040 are separated by 61 nucleotides HUW76_03040 and HUW76_03045 are separated by 124 nucleotides HUW76_03045 and HUW76_03050 are separated by 247 nucleotides
HUW76_03030: HUW76_03030 - NusG domain II-containing protein, at 618,178 to 618,570
_03030
HUW76_03035: HUW76_03035 - phosphatidylserine decarboxylase, at 618,557 to 619,459
_03035
HUW76_03040: HUW76_03040 - nicotinate phosphoribosyltransferase, at 619,521 to 621,026
_03040
HUW76_03045: HUW76_03045 - D-tyrosyl-tRNA(Tyr) deacylase, at 621,151 to 621,606
_03045
HUW76_03050: HUW76_03050 - magnesium transporter, at 621,854 to 622,297
_03050
Position (kb) 619
620
621
622 Strain fitness (log2 ratio) -1
0
1
2 at 618.553 kb on - strand at 619.478 kb on - strand at 619.498 kb on - strand at 619.498 kb on - strand at 621.170 kb on + strand at 621.170 kb on + strand at 621.170 kb on + strand at 621.170 kb on + strand at 621.170 kb on + strand at 621.170 kb on + strand at 621.170 kb on + strand at 621.170 kb on + strand at 621.170 kb on + strand at 621.170 kb on + strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.178 kb on - strand at 621.187 kb on - strand at 621.263 kb on + strand, within HUW76_03045 at 621.263 kb on + strand, within HUW76_03045 at 621.282 kb on - strand, within HUW76_03045 at 621.360 kb on - strand, within HUW76_03045 at 621.366 kb on + strand, within HUW76_03045 at 621.366 kb on + strand, within HUW76_03045 at 621.367 kb on + strand, within HUW76_03045 at 621.367 kb on + strand, within HUW76_03045 at 621.367 kb on + strand, within HUW76_03045 at 621.367 kb on + strand, within HUW76_03045 at 621.367 kb on + strand, within HUW76_03045 at 621.384 kb on + strand, within HUW76_03045 at 621.384 kb on + strand, within HUW76_03045 at 621.433 kb on - strand, within HUW76_03045 at 621.508 kb on + strand, within HUW76_03045 at 621.547 kb on - strand, within HUW76_03045 at 621.547 kb on - strand, within HUW76_03045 at 621.581 kb on + strand at 621.588 kb on + strand at 621.588 kb on + strand at 621.671 kb on - strand at 621.695 kb on + strand at 621.695 kb on + strand at 621.703 kb on - strand at 621.703 kb on - strand at 621.704 kb on + strand at 621.704 kb on + strand at 621.712 kb on - strand at 621.712 kb on - strand at 621.798 kb on + strand at 621.798 kb on + strand at 621.798 kb on + strand at 621.798 kb on + strand at 621.798 kb on + strand at 621.798 kb on + strand at 621.798 kb on + strand at 621.800 kb on + strand at 621.800 kb on + strand at 621.800 kb on + strand at 621.806 kb on - strand at 621.806 kb on - strand at 621.806 kb on - strand at 621.806 kb on - strand at 621.806 kb on - strand at 621.806 kb on - strand at 621.808 kb on - strand at 621.808 kb on - strand at 621.917 kb on - strand, within HUW76_03050
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 618,553 - -0.9 619,478 - +0.5 619,498 - -0.2 619,498 - -0.4 621,170 + -0.0 621,170 + -0.2 621,170 + +0.1 621,170 + +0.1 621,170 + -0.7 621,170 + +0.1 621,170 + -0.5 621,170 + -0.1 621,170 + -0.0 621,170 + -0.1 621,178 - -0.4 621,178 - -0.1 621,178 - -0.1 621,178 - +0.7 621,178 - +0.7 621,178 - +0.8 621,178 - -0.6 621,178 - +1.2 621,178 - +0.4 621,178 - +0.3 621,178 - +0.4 621,178 - -0.1 621,178 - +0.6 621,187 - -0.6 621,263 + HUW76_03045 0.25 -0.1 621,263 + HUW76_03045 0.25 -0.7 621,282 - HUW76_03045 0.29 +1.3 621,360 - HUW76_03045 0.46 +0.4 621,366 + HUW76_03045 0.47 -0.2 621,366 + HUW76_03045 0.47 -0.1 621,367 + HUW76_03045 0.47 -0.7 621,367 + HUW76_03045 0.47 -0.7 621,367 + HUW76_03045 0.47 -0.6 621,367 + HUW76_03045 0.47 -0.3 621,367 + HUW76_03045 0.47 -0.0 621,384 + HUW76_03045 0.51 +0.4 621,384 + HUW76_03045 0.51 +0.1 621,433 - HUW76_03045 0.62 +0.2 621,508 + HUW76_03045 0.78 +0.3 621,547 - HUW76_03045 0.87 -0.0 621,547 - HUW76_03045 0.87 +0.6 621,581 + -0.2 621,588 + -0.8 621,588 + +0.5 621,671 - +2.3 621,695 + +0.7 621,695 + +1.0 621,703 - +1.0 621,703 - +1.2 621,704 + +1.4 621,704 + -0.0 621,712 - +1.3 621,712 - +1.2 621,798 + +0.0 621,798 + +0.1 621,798 + -0.5 621,798 + +0.6 621,798 + -0.6 621,798 + +1.0 621,798 + -0.2 621,800 + -0.8 621,800 + +0.4 621,800 + -0.6 621,806 - -0.1 621,806 - -0.4 621,806 - -1.1 621,806 - -0.5 621,806 - +1.2 621,806 - -0.3 621,808 - -0.2 621,808 - -0.4 621,917 - HUW76_03050 0.14 +1.0
Or see this region's nucleotide sequence