Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03025

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03020 and HUW76_03025 overlap by 4 nucleotidesHUW76_03025 and HUW76_03030 are separated by 33 nucleotidesHUW76_03030 and HUW76_03035 overlap by 14 nucleotides HUW76_03020: HUW76_03020 - class I SAM-dependent RNA methyltransferase, at 615,914 to 617,053 _03020 HUW76_03025: HUW76_03025 - AI-2E family transporter, at 617,050 to 618,144 _03025 HUW76_03030: HUW76_03030 - NusG domain II-containing protein, at 618,178 to 618,570 _03030 HUW76_03035: HUW76_03035 - phosphatidylserine decarboxylase, at 618,557 to 619,459 _03035 Position (kb) 617 618 619Strain fitness (log2 ratio) -2 -1 0 1 2 3at 616.132 kb on + strand, within HUW76_03020at 616.134 kb on - strand, within HUW76_03020at 616.134 kb on - strand, within HUW76_03020at 616.214 kb on + strand, within HUW76_03020at 616.230 kb on + strand, within HUW76_03020at 616.230 kb on + strand, within HUW76_03020at 616.339 kb on - strand, within HUW76_03020at 616.339 kb on - strand, within HUW76_03020at 616.348 kb on - strand, within HUW76_03020at 616.348 kb on - strand, within HUW76_03020at 616.419 kb on - strand, within HUW76_03020at 616.419 kb on - strand, within HUW76_03020at 616.428 kb on + strand, within HUW76_03020at 616.428 kb on + strand, within HUW76_03020at 616.461 kb on + strand, within HUW76_03020at 616.461 kb on + strand, within HUW76_03020at 616.469 kb on - strand, within HUW76_03020at 616.483 kb on - strand, within HUW76_03020at 616.524 kb on - strand, within HUW76_03020at 616.551 kb on - strand, within HUW76_03020at 616.551 kb on - strand, within HUW76_03020at 616.560 kb on + strand, within HUW76_03020at 616.560 kb on + strand, within HUW76_03020at 616.560 kb on + strand, within HUW76_03020at 616.578 kb on + strand, within HUW76_03020at 616.583 kb on + strand, within HUW76_03020at 616.588 kb on + strand, within HUW76_03020at 616.596 kb on - strand, within HUW76_03020at 616.596 kb on - strand, within HUW76_03020at 616.596 kb on - strand, within HUW76_03020at 616.596 kb on - strand, within HUW76_03020at 616.603 kb on - strand, within HUW76_03020at 616.621 kb on + strand, within HUW76_03020at 616.654 kb on - strand, within HUW76_03020at 616.654 kb on - strand, within HUW76_03020at 616.795 kb on - strand, within HUW76_03020at 616.795 kb on - strand, within HUW76_03020at 616.853 kb on + strand, within HUW76_03020at 616.853 kb on + strand, within HUW76_03020at 616.868 kb on - strand, within HUW76_03020at 616.868 kb on - strand, within HUW76_03020at 616.911 kb on + strand, within HUW76_03020at 616.919 kb on - strand, within HUW76_03020at 616.919 kb on - strand, within HUW76_03020at 616.919 kb on - strand, within HUW76_03020at 616.919 kb on - strand, within HUW76_03020at 616.925 kb on - strand, within HUW76_03020at 616.925 kb on - strand, within HUW76_03020at 616.985 kb on + strandat 616.985 kb on + strandat 616.985 kb on + strandat 616.992 kb on + strandat 616.993 kb on - strandat 617.063 kb on - strandat 617.070 kb on - strandat 617.113 kb on + strandat 617.113 kb on + strandat 617.113 kb on + strandat 617.113 kb on + strandat 617.113 kb on + strandat 617.113 kb on + strandat 617.113 kb on + strandat 617.113 kb on + strandat 617.121 kb on - strandat 617.121 kb on - strandat 617.121 kb on - strandat 617.121 kb on - strandat 617.126 kb on + strandat 617.126 kb on + strandat 617.126 kb on + strandat 617.126 kb on + strandat 617.126 kb on + strandat 617.178 kb on + strand, within HUW76_03025at 617.184 kb on + strand, within HUW76_03025at 617.220 kb on + strand, within HUW76_03025at 617.220 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.232 kb on + strand, within HUW76_03025at 617.239 kb on + strand, within HUW76_03025at 617.239 kb on + strand, within HUW76_03025at 617.240 kb on - strand, within HUW76_03025at 617.240 kb on - strand, within HUW76_03025at 617.249 kb on + strand, within HUW76_03025at 617.348 kb on + strand, within HUW76_03025at 617.348 kb on + strand, within HUW76_03025at 617.371 kb on + strand, within HUW76_03025at 617.379 kb on + strand, within HUW76_03025at 617.387 kb on - strand, within HUW76_03025at 617.387 kb on - strand, within HUW76_03025at 617.394 kb on - strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.396 kb on + strand, within HUW76_03025at 617.399 kb on - strand, within HUW76_03025at 617.404 kb on - strand, within HUW76_03025at 617.404 kb on - strand, within HUW76_03025at 617.404 kb on - strand, within HUW76_03025at 617.510 kb on - strand, within HUW76_03025at 617.510 kb on - strand, within HUW76_03025at 617.510 kb on - strand, within HUW76_03025at 617.510 kb on - strand, within HUW76_03025at 617.534 kb on - strand, within HUW76_03025at 617.534 kb on - strand, within HUW76_03025at 617.560 kb on + strand, within HUW76_03025at 617.620 kb on + strand, within HUW76_03025at 617.620 kb on + strand, within HUW76_03025at 617.622 kb on - strand, within HUW76_03025at 617.643 kb on + strand, within HUW76_03025at 617.663 kb on - strand, within HUW76_03025at 617.663 kb on - strand, within HUW76_03025at 617.670 kb on + strand, within HUW76_03025at 617.673 kb on - strand, within HUW76_03025at 617.673 kb on - strand, within HUW76_03025at 617.774 kb on + strand, within HUW76_03025at 617.774 kb on + strand, within HUW76_03025at 617.782 kb on - strand, within HUW76_03025at 617.782 kb on - strand, within HUW76_03025at 617.799 kb on - strand, within HUW76_03025at 617.837 kb on - strand, within HUW76_03025at 617.996 kb on + strand, within HUW76_03025at 618.012 kb on + strand, within HUW76_03025at 618.012 kb on + strand, within HUW76_03025at 618.158 kb on + strandat 618.158 kb on + strandat 618.173 kb on + strandat 618.201 kb on - strandat 618.201 kb on - strandat 618.265 kb on - strand, within HUW76_03030at 618.265 kb on - strand, within HUW76_03030at 618.275 kb on - strand, within HUW76_03030at 618.291 kb on + strand, within HUW76_03030at 618.337 kb on - strand, within HUW76_03030at 618.365 kb on - strand, within HUW76_03030at 618.461 kb on + strand, within HUW76_03030at 618.479 kb on - strand, within HUW76_03030at 618.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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616,132 + HUW76_03020 0.19 +0.5
616,134 - HUW76_03020 0.19 -0.5
616,134 - HUW76_03020 0.19 -0.4
616,214 + HUW76_03020 0.26 +0.6
616,230 + HUW76_03020 0.28 -0.4
616,230 + HUW76_03020 0.28 -2.4
616,339 - HUW76_03020 0.37 +0.4
616,339 - HUW76_03020 0.37 +0.2
616,348 - HUW76_03020 0.38 +0.3
616,348 - HUW76_03020 0.38 -0.1
616,419 - HUW76_03020 0.44 -0.6
616,419 - HUW76_03020 0.44 -0.6
616,428 + HUW76_03020 0.45 +0.7
616,428 + HUW76_03020 0.45 +2.3
616,461 + HUW76_03020 0.48 +0.5
616,461 + HUW76_03020 0.48 +1.0
616,469 - HUW76_03020 0.49 +0.2
616,483 - HUW76_03020 0.50 -0.6
616,524 - HUW76_03020 0.54 -1.0
616,551 - HUW76_03020 0.56 +0.5
616,551 - HUW76_03020 0.56 +0.6
616,560 + HUW76_03020 0.57 +1.6
616,560 + HUW76_03020 0.57 +0.4
616,560 + HUW76_03020 0.57 +0.5
616,578 + HUW76_03020 0.58 +0.4
616,583 + HUW76_03020 0.59 +0.1
616,588 + HUW76_03020 0.59 +0.8
616,596 - HUW76_03020 0.60 -0.3
616,596 - HUW76_03020 0.60 -0.1
616,596 - HUW76_03020 0.60 -0.1
616,596 - HUW76_03020 0.60 +0.1
616,603 - HUW76_03020 0.60 +0.2
616,621 + HUW76_03020 0.62 +0.2
616,654 - HUW76_03020 0.65 +0.1
616,654 - HUW76_03020 0.65 -1.1
616,795 - HUW76_03020 0.77 -1.1
616,795 - HUW76_03020 0.77 -1.2
616,853 + HUW76_03020 0.82 +0.3
616,853 + HUW76_03020 0.82 +3.1
616,868 - HUW76_03020 0.84 -0.9
616,868 - HUW76_03020 0.84 +1.3
616,911 + HUW76_03020 0.87 +0.1
616,919 - HUW76_03020 0.88 -1.0
616,919 - HUW76_03020 0.88 -0.4
616,919 - HUW76_03020 0.88 -1.2
616,919 - HUW76_03020 0.88 -0.4
616,925 - HUW76_03020 0.89 +0.2
616,925 - HUW76_03020 0.89 +0.0
616,985 + -0.2
616,985 + +1.2
616,985 + +0.0
616,992 + +1.1
616,993 - -0.2
617,063 - -0.7
617,070 - -0.5
617,113 + +0.2
617,113 + +0.1
617,113 + -0.6
617,113 + +1.0
617,113 + +0.6
617,113 + +0.5
617,113 + -0.5
617,113 + +1.3
617,121 - +0.8
617,121 - -0.5
617,121 - -1.3
617,121 - -0.4
617,126 + +1.5
617,126 + +1.3
617,126 + +0.6
617,126 + +1.0
617,126 + +1.4
617,178 + HUW76_03025 0.12 +0.3
617,184 + HUW76_03025 0.12 +0.7
617,220 + HUW76_03025 0.16 +0.8
617,220 + HUW76_03025 0.16 -0.1
617,232 + HUW76_03025 0.17 +0.5
617,232 + HUW76_03025 0.17 +0.8
617,232 + HUW76_03025 0.17 +1.4
617,232 + HUW76_03025 0.17 +0.0
617,232 + HUW76_03025 0.17 +0.3
617,232 + HUW76_03025 0.17 +1.2
617,239 + HUW76_03025 0.17 +0.3
617,239 + HUW76_03025 0.17 +0.3
617,240 - HUW76_03025 0.17 +0.3
617,240 - HUW76_03025 0.17 -1.0
617,249 + HUW76_03025 0.18 +0.4
617,348 + HUW76_03025 0.27 -0.5
617,348 + HUW76_03025 0.27 +1.6
617,371 + HUW76_03025 0.29 +0.5
617,379 + HUW76_03025 0.30 +0.3
617,387 - HUW76_03025 0.31 -0.2
617,387 - HUW76_03025 0.31 -0.6
617,394 - HUW76_03025 0.31 -0.4
617,396 + HUW76_03025 0.32 -0.0
617,396 + HUW76_03025 0.32 +1.4
617,396 + HUW76_03025 0.32 +0.6
617,396 + HUW76_03025 0.32 +0.6
617,396 + HUW76_03025 0.32 +1.6
617,396 + HUW76_03025 0.32 +0.7
617,396 + HUW76_03025 0.32 +0.1
617,399 - HUW76_03025 0.32 -0.1
617,404 - HUW76_03025 0.32 +1.8
617,404 - HUW76_03025 0.32 -0.1
617,404 - HUW76_03025 0.32 -0.7
617,510 - HUW76_03025 0.42 -0.3
617,510 - HUW76_03025 0.42 -1.4
617,510 - HUW76_03025 0.42 -0.8
617,510 - HUW76_03025 0.42 -0.1
617,534 - HUW76_03025 0.44 +0.7
617,534 - HUW76_03025 0.44 -0.6
617,560 + HUW76_03025 0.47 -0.1
617,620 + HUW76_03025 0.52 -0.3
617,620 + HUW76_03025 0.52 -0.1
617,622 - HUW76_03025 0.52 +0.0
617,643 + HUW76_03025 0.54 +0.1
617,663 - HUW76_03025 0.56 -1.1
617,663 - HUW76_03025 0.56 -0.2
617,670 + HUW76_03025 0.57 +0.4
617,673 - HUW76_03025 0.57 -0.8
617,673 - HUW76_03025 0.57 -0.4
617,774 + HUW76_03025 0.66 -0.2
617,774 + HUW76_03025 0.66 +1.0
617,782 - HUW76_03025 0.67 -0.2
617,782 - HUW76_03025 0.67 -1.6
617,799 - HUW76_03025 0.68 +0.4
617,837 - HUW76_03025 0.72 -0.3
617,996 + HUW76_03025 0.86 +0.3
618,012 + HUW76_03025 0.88 -0.1
618,012 + HUW76_03025 0.88 +0.1
618,158 + +0.4
618,158 + +0.9
618,173 + +0.4
618,201 - +0.2
618,201 - +0.5
618,265 - HUW76_03030 0.22 -0.9
618,265 - HUW76_03030 0.22 -1.3
618,275 - HUW76_03030 0.25 -1.9
618,291 + HUW76_03030 0.29 -1.5
618,337 - HUW76_03030 0.40 +0.4
618,365 - HUW76_03030 0.48 +2.0
618,461 + HUW76_03030 0.72 -1.9
618,479 - HUW76_03030 0.77 -1.4
618,553 - -0.9

Or see this region's nucleotide sequence