Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_02855 and HUW76_02860 are separated by 12 nucleotides HUW76_02860 and HUW76_02865 are separated by 50 nucleotides HUW76_02865 and HUW76_02870 are separated by 229 nucleotides
HUW76_02855: HUW76_02855 - dipeptidase PepV, at 583,777 to 585,135
_02855
HUW76_02860: HUW76_02860 - DUF2156 domain-containing protein, at 585,148 to 586,020
_02860
HUW76_02865: HUW76_02865 - Na/Pi cotransporter family protein, at 586,071 to 587,690
_02865
HUW76_02870: HUW76_02870 - molecular chaperone HtpG, at 587,920 to 589,743
_02870
Position (kb) 586
587
588 Strain fitness (log2 ratio) -1
0
1
2 at 585.330 kb on + strand, within HUW76_02860 at 585.330 kb on + strand, within HUW76_02860 at 585.415 kb on + strand, within HUW76_02860 at 585.415 kb on + strand, within HUW76_02860 at 585.474 kb on + strand, within HUW76_02860 at 585.474 kb on + strand, within HUW76_02860 at 585.499 kb on + strand, within HUW76_02860 at 585.499 kb on + strand, within HUW76_02860 at 585.781 kb on + strand, within HUW76_02860 at 585.794 kb on + strand, within HUW76_02860 at 585.798 kb on + strand, within HUW76_02860 at 585.945 kb on + strand at 587.881 kb on + strand at 587.962 kb on + strand at 587.964 kb on + strand at 587.972 kb on - strand at 588.114 kb on + strand, within HUW76_02870 at 588.114 kb on + strand, within HUW76_02870 at 588.124 kb on + strand, within HUW76_02870 at 588.124 kb on + strand, within HUW76_02870 at 588.129 kb on + strand, within HUW76_02870 at 588.129 kb on + strand, within HUW76_02870 at 588.129 kb on + strand, within HUW76_02870 at 588.137 kb on - strand, within HUW76_02870 at 588.165 kb on + strand, within HUW76_02870 at 588.166 kb on + strand, within HUW76_02870 at 588.181 kb on - strand, within HUW76_02870 at 588.244 kb on - strand, within HUW76_02870 at 588.258 kb on + strand, within HUW76_02870 at 588.258 kb on + strand, within HUW76_02870 at 588.269 kb on + strand, within HUW76_02870 at 588.290 kb on - strand, within HUW76_02870 at 588.428 kb on - strand, within HUW76_02870 at 588.434 kb on + strand, within HUW76_02870 at 588.460 kb on + strand, within HUW76_02870 at 588.460 kb on + strand, within HUW76_02870 at 588.464 kb on + strand, within HUW76_02870 at 588.464 kb on + strand, within HUW76_02870 at 588.524 kb on + strand, within HUW76_02870 at 588.524 kb on + strand, within HUW76_02870 at 588.530 kb on - strand, within HUW76_02870 at 588.530 kb on - strand, within HUW76_02870 at 588.530 kb on - strand, within HUW76_02870 at 588.638 kb on + strand, within HUW76_02870 at 588.682 kb on + strand, within HUW76_02870 at 588.682 kb on + strand, within HUW76_02870 at 588.682 kb on + strand, within HUW76_02870 at 588.687 kb on + strand, within HUW76_02870 at 588.687 kb on + strand, within HUW76_02870
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 585,330 + HUW76_02860 0.21 +0.1 585,330 + HUW76_02860 0.21 -0.1 585,415 + HUW76_02860 0.31 -1.1 585,415 + HUW76_02860 0.31 +1.3 585,474 + HUW76_02860 0.37 -0.5 585,474 + HUW76_02860 0.37 -0.5 585,499 + HUW76_02860 0.40 -0.8 585,499 + HUW76_02860 0.40 +0.3 585,781 + HUW76_02860 0.73 -0.7 585,794 + HUW76_02860 0.74 -0.1 585,798 + HUW76_02860 0.74 -1.0 585,945 + -0.4 587,881 + -0.8 587,962 + -0.0 587,964 + -0.5 587,972 - +0.7 588,114 + HUW76_02870 0.11 -0.7 588,114 + HUW76_02870 0.11 -0.0 588,124 + HUW76_02870 0.11 -0.2 588,124 + HUW76_02870 0.11 -0.4 588,129 + HUW76_02870 0.11 -0.7 588,129 + HUW76_02870 0.11 -0.6 588,129 + HUW76_02870 0.11 -0.2 588,137 - HUW76_02870 0.12 +0.6 588,165 + HUW76_02870 0.13 -0.2 588,166 + HUW76_02870 0.13 -0.2 588,181 - HUW76_02870 0.14 +0.2 588,244 - HUW76_02870 0.18 +0.1 588,258 + HUW76_02870 0.19 -1.7 588,258 + HUW76_02870 0.19 +0.1 588,269 + HUW76_02870 0.19 -0.2 588,290 - HUW76_02870 0.20 +1.2 588,428 - HUW76_02870 0.28 +1.2 588,434 + HUW76_02870 0.28 -0.3 588,460 + HUW76_02870 0.30 -0.2 588,460 + HUW76_02870 0.30 -0.5 588,464 + HUW76_02870 0.30 -0.4 588,464 + HUW76_02870 0.30 -0.5 588,524 + HUW76_02870 0.33 -0.1 588,524 + HUW76_02870 0.33 +0.3 588,530 - HUW76_02870 0.33 +0.8 588,530 - HUW76_02870 0.33 +1.8 588,530 - HUW76_02870 0.33 +0.2 588,638 + HUW76_02870 0.39 -0.3 588,682 + HUW76_02870 0.42 -0.9 588,682 + HUW76_02870 0.42 +0.1 588,682 + HUW76_02870 0.42 -0.1 588,687 + HUW76_02870 0.42 -0.0 588,687 + HUW76_02870 0.42 -0.4
Or see this region's nucleotide sequence