Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_02855 and HUW76_02860 are separated by 12 nucleotides HUW76_02860 and HUW76_02865 are separated by 50 nucleotides
HUW76_02855: HUW76_02855 - dipeptidase PepV, at 583,777 to 585,135
_02855
HUW76_02860: HUW76_02860 - DUF2156 domain-containing protein, at 585,148 to 586,020
_02860
HUW76_02865: HUW76_02865 - Na/Pi cotransporter family protein, at 586,071 to 587,690
_02865
Position (kb) 585
586
587 Strain fitness (log2 ratio) -1
0
1
2
3 at 584.202 kb on + strand, within HUW76_02855 at 584.202 kb on + strand, within HUW76_02855 at 584.205 kb on + strand, within HUW76_02855 at 584.205 kb on + strand, within HUW76_02855 at 584.205 kb on + strand, within HUW76_02855 at 584.268 kb on + strand, within HUW76_02855 at 584.333 kb on + strand, within HUW76_02855 at 584.410 kb on + strand, within HUW76_02855 at 584.537 kb on + strand, within HUW76_02855 at 584.655 kb on + strand, within HUW76_02855 at 584.655 kb on + strand, within HUW76_02855 at 584.770 kb on + strand, within HUW76_02855 at 584.770 kb on + strand, within HUW76_02855 at 584.770 kb on + strand, within HUW76_02855 at 584.770 kb on + strand, within HUW76_02855 at 584.818 kb on + strand, within HUW76_02855 at 584.835 kb on + strand, within HUW76_02855 at 584.835 kb on + strand, within HUW76_02855 at 584.835 kb on + strand, within HUW76_02855 at 584.836 kb on + strand, within HUW76_02855 at 584.862 kb on + strand, within HUW76_02855 at 584.862 kb on + strand, within HUW76_02855 at 584.869 kb on + strand, within HUW76_02855 at 584.875 kb on + strand, within HUW76_02855 at 584.875 kb on + strand, within HUW76_02855 at 584.943 kb on + strand, within HUW76_02855 at 584.943 kb on + strand, within HUW76_02855 at 584.943 kb on + strand, within HUW76_02855 at 584.943 kb on + strand, within HUW76_02855 at 585.036 kb on + strand at 585.040 kb on + strand at 585.040 kb on + strand at 585.330 kb on + strand, within HUW76_02860 at 585.330 kb on + strand, within HUW76_02860 at 585.415 kb on + strand, within HUW76_02860 at 585.415 kb on + strand, within HUW76_02860 at 585.474 kb on + strand, within HUW76_02860 at 585.474 kb on + strand, within HUW76_02860 at 585.499 kb on + strand, within HUW76_02860 at 585.499 kb on + strand, within HUW76_02860 at 585.781 kb on + strand, within HUW76_02860 at 585.794 kb on + strand, within HUW76_02860 at 585.798 kb on + strand, within HUW76_02860 at 585.945 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 584,202 + HUW76_02855 0.31 +0.1 584,202 + HUW76_02855 0.31 +0.1 584,205 + HUW76_02855 0.31 +0.1 584,205 + HUW76_02855 0.31 -0.2 584,205 + HUW76_02855 0.31 -0.5 584,268 + HUW76_02855 0.36 +0.4 584,333 + HUW76_02855 0.41 -0.8 584,410 + HUW76_02855 0.47 +2.8 584,537 + HUW76_02855 0.56 -0.1 584,655 + HUW76_02855 0.65 -0.6 584,655 + HUW76_02855 0.65 -0.5 584,770 + HUW76_02855 0.73 -0.9 584,770 + HUW76_02855 0.73 +0.0 584,770 + HUW76_02855 0.73 -0.6 584,770 + HUW76_02855 0.73 -0.6 584,818 + HUW76_02855 0.77 +0.1 584,835 + HUW76_02855 0.78 -1.4 584,835 + HUW76_02855 0.78 -0.3 584,835 + HUW76_02855 0.78 -0.0 584,836 + HUW76_02855 0.78 -0.6 584,862 + HUW76_02855 0.80 -0.1 584,862 + HUW76_02855 0.80 -0.4 584,869 + HUW76_02855 0.80 -0.4 584,875 + HUW76_02855 0.81 -0.3 584,875 + HUW76_02855 0.81 -0.9 584,943 + HUW76_02855 0.86 -0.2 584,943 + HUW76_02855 0.86 -0.3 584,943 + HUW76_02855 0.86 -0.5 584,943 + HUW76_02855 0.86 -0.1 585,036 + -0.1 585,040 + +0.3 585,040 + -0.7 585,330 + HUW76_02860 0.21 +0.1 585,330 + HUW76_02860 0.21 -0.1 585,415 + HUW76_02860 0.31 -1.1 585,415 + HUW76_02860 0.31 +1.3 585,474 + HUW76_02860 0.37 -0.5 585,474 + HUW76_02860 0.37 -0.5 585,499 + HUW76_02860 0.40 -0.8 585,499 + HUW76_02860 0.40 +0.3 585,781 + HUW76_02860 0.73 -0.7 585,794 + HUW76_02860 0.74 -0.1 585,798 + HUW76_02860 0.74 -1.0 585,945 + -0.4
Or see this region's nucleotide sequence