Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02665

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02655 and HUW76_02660 are separated by 267 nucleotidesHUW76_02660 and HUW76_02665 are separated by 4 nucleotidesHUW76_02665 and HUW76_02670 are separated by 250 nucleotides HUW76_02655: HUW76_02655 - purine-nucleoside phosphorylase, at 543,085 to 543,792 _02655 HUW76_02660: HUW76_02660 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 544,060 to 544,566 _02660 HUW76_02665: HUW76_02665 - anaerobic ribonucleoside-triphosphate reductase, at 544,571 to 546,757 _02665 HUW76_02670: HUW76_02670 - ABC transporter ATP-binding protein, at 547,008 to 548,078 _02670 Position (kb) 544 545 546 547Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 543.629 kb on + strand, within HUW76_02655at 543.657 kb on + strand, within HUW76_02655at 543.657 kb on + strand, within HUW76_02655at 543.657 kb on + strand, within HUW76_02655at 543.657 kb on + strand, within HUW76_02655at 543.657 kb on + strand, within HUW76_02655at 543.657 kb on + strand, within HUW76_02655at 543.657 kb on + strand, within HUW76_02655at 543.657 kb on + strand, within HUW76_02655at 543.657 kb on + strand, within HUW76_02655at 543.660 kb on - strand, within HUW76_02655at 543.663 kb on + strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.665 kb on - strand, within HUW76_02655at 543.671 kb on - strand, within HUW76_02655at 543.671 kb on - strand, within HUW76_02655at 543.671 kb on - strand, within HUW76_02655at 543.671 kb on - strand, within HUW76_02655at 543.707 kb on + strand, within HUW76_02655at 543.722 kb on + strandat 543.755 kb on + strandat 543.921 kb on + strandat 543.921 kb on + strandat 544.086 kb on + strandat 544.490 kb on - strand, within HUW76_02660at 544.520 kb on - strandat 544.569 kb on - strandat 544.577 kb on - strandat 544.577 kb on - strandat 544.579 kb on + strandat 544.587 kb on - strandat 544.587 kb on - strandat 544.587 kb on - strandat 544.587 kb on - strandat 544.587 kb on - strandat 544.587 kb on - strandat 544.632 kb on - strandat 544.632 kb on - strandat 544.637 kb on - strandat 544.661 kb on - strandat 544.669 kb on - strandat 544.671 kb on - strandat 544.671 kb on - strandat 544.748 kb on - strandat 544.795 kb on - strand, within HUW76_02665at 544.882 kb on - strand, within HUW76_02665at 545.054 kb on - strand, within HUW76_02665at 545.072 kb on - strand, within HUW76_02665at 545.212 kb on + strand, within HUW76_02665at 545.212 kb on + strand, within HUW76_02665at 545.212 kb on + strand, within HUW76_02665at 545.212 kb on + strand, within HUW76_02665at 545.220 kb on - strand, within HUW76_02665at 545.224 kb on - strand, within HUW76_02665at 545.429 kb on + strand, within HUW76_02665at 545.583 kb on - strand, within HUW76_02665at 545.679 kb on + strand, within HUW76_02665at 545.679 kb on + strand, within HUW76_02665at 545.775 kb on + strand, within HUW76_02665at 545.783 kb on - strand, within HUW76_02665at 545.809 kb on - strand, within HUW76_02665at 546.076 kb on - strand, within HUW76_02665at 546.176 kb on - strand, within HUW76_02665at 546.176 kb on - strand, within HUW76_02665at 546.218 kb on - strand, within HUW76_02665at 546.349 kb on - strand, within HUW76_02665at 546.395 kb on - strand, within HUW76_02665at 546.702 kb on + strandat 546.732 kb on - strandat 546.761 kb on + strandat 546.762 kb on + strandat 546.762 kb on + strandat 546.769 kb on + strandat 546.769 kb on - strandat 546.770 kb on - strandat 546.770 kb on - strandat 546.770 kb on - strandat 546.899 kb on - strandat 546.982 kb on - strandat 546.982 kb on - strandat 546.982 kb on - strandat 546.982 kb on - strandat 546.982 kb on - strandat 546.982 kb on - strandat 547.088 kb on - strandat 547.099 kb on - strandat 547.099 kb on - strandat 547.101 kb on + strandat 547.107 kb on + strandat 547.108 kb on - strandat 547.109 kb on - strandat 547.116 kb on - strand, within HUW76_02670at 547.157 kb on + strand, within HUW76_02670at 547.248 kb on + strand, within HUW76_02670at 547.248 kb on + strand, within HUW76_02670at 547.292 kb on + strand, within HUW76_02670at 547.292 kb on + strand, within HUW76_02670at 547.292 kb on + strand, within HUW76_02670at 547.292 kb on - strand, within HUW76_02670at 547.292 kb on - strand, within HUW76_02670at 547.420 kb on - strand, within HUW76_02670at 547.433 kb on - strand, within HUW76_02670at 547.433 kb on - strand, within HUW76_02670at 547.473 kb on - strand, within HUW76_02670at 547.473 kb on - strand, within HUW76_02670at 547.556 kb on - strand, within HUW76_02670at 547.566 kb on - strand, within HUW76_02670at 547.586 kb on + strand, within HUW76_02670at 547.622 kb on + strand, within HUW76_02670at 547.622 kb on + strand, within HUW76_02670at 547.627 kb on + strand, within HUW76_02670at 547.640 kb on - strand, within HUW76_02670at 547.640 kb on - strand, within HUW76_02670at 547.662 kb on + strand, within HUW76_02670at 547.694 kb on + strand, within HUW76_02670at 547.694 kb on + strand, within HUW76_02670at 547.746 kb on - strand, within HUW76_02670

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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543,629 + HUW76_02655 0.77 +0.4
543,657 + HUW76_02655 0.81 -0.5
543,657 + HUW76_02655 0.81 -0.9
543,657 + HUW76_02655 0.81 -0.6
543,657 + HUW76_02655 0.81 -0.6
543,657 + HUW76_02655 0.81 -0.4
543,657 + HUW76_02655 0.81 -0.1
543,657 + HUW76_02655 0.81 +0.3
543,657 + HUW76_02655 0.81 -0.6
543,657 + HUW76_02655 0.81 -0.4
543,660 - HUW76_02655 0.81 +3.6
543,663 + HUW76_02655 0.82 -0.1
543,665 - HUW76_02655 0.82 +0.7
543,665 - HUW76_02655 0.82 +1.7
543,665 - HUW76_02655 0.82 +1.0
543,665 - HUW76_02655 0.82 +1.2
543,665 - HUW76_02655 0.82 +1.4
543,665 - HUW76_02655 0.82 +1.5
543,665 - HUW76_02655 0.82 +2.3
543,665 - HUW76_02655 0.82 -0.0
543,665 - HUW76_02655 0.82 +2.2
543,665 - HUW76_02655 0.82 +0.9
543,665 - HUW76_02655 0.82 +0.8
543,671 - HUW76_02655 0.83 -0.3
543,671 - HUW76_02655 0.83 -0.2
543,671 - HUW76_02655 0.83 +0.2
543,671 - HUW76_02655 0.83 -0.1
543,707 + HUW76_02655 0.88 -0.2
543,722 + -0.3
543,755 + +0.1
543,921 + -0.8
543,921 + -0.6
544,086 + +0.1
544,490 - HUW76_02660 0.85 +0.7
544,520 - -1.3
544,569 - -2.3
544,577 - -1.8
544,577 - -4.0
544,579 + -1.6
544,587 - -2.0
544,587 - -1.6
544,587 - -2.4
544,587 - -0.3
544,587 - -2.2
544,587 - -1.9
544,632 - -2.3
544,632 - -0.3
544,637 - -0.8
544,661 - -1.0
544,669 - -0.0
544,671 - -1.0
544,671 - -0.3
544,748 - +1.7
544,795 - HUW76_02665 0.10 -0.4
544,882 - HUW76_02665 0.14 -0.0
545,054 - HUW76_02665 0.22 -1.0
545,072 - HUW76_02665 0.23 +1.0
545,212 + HUW76_02665 0.29 -1.3
545,212 + HUW76_02665 0.29 -0.0
545,212 + HUW76_02665 0.29 -0.2
545,212 + HUW76_02665 0.29 -1.0
545,220 - HUW76_02665 0.30 -1.0
545,224 - HUW76_02665 0.30 -0.3
545,429 + HUW76_02665 0.39 -0.6
545,583 - HUW76_02665 0.46 -0.0
545,679 + HUW76_02665 0.51 +1.4
545,679 + HUW76_02665 0.51 -0.6
545,775 + HUW76_02665 0.55 +1.0
545,783 - HUW76_02665 0.55 -2.2
545,809 - HUW76_02665 0.57 -0.6
546,076 - HUW76_02665 0.69 -0.8
546,176 - HUW76_02665 0.73 +0.2
546,176 - HUW76_02665 0.73 -0.6
546,218 - HUW76_02665 0.75 -1.6
546,349 - HUW76_02665 0.81 -0.6
546,395 - HUW76_02665 0.83 -0.6
546,702 + -0.0
546,732 - -0.6
546,761 + -0.2
546,762 + -1.3
546,762 + -0.0
546,769 + -1.0
546,769 - -2.3
546,770 - -1.3
546,770 - -3.7
546,770 - -2.3
546,899 - -0.3
546,982 - -0.7
546,982 - -1.0
546,982 - -0.2
546,982 - +0.4
546,982 - -0.5
546,982 - -0.6
547,088 - -0.1
547,099 - -0.6
547,099 - +0.3
547,101 + +0.9
547,107 + +0.4
547,108 - -0.5
547,109 - -0.7
547,116 - HUW76_02670 0.10 -0.3
547,157 + HUW76_02670 0.14 +0.7
547,248 + HUW76_02670 0.22 -0.1
547,248 + HUW76_02670 0.22 +0.8
547,292 + HUW76_02670 0.27 +0.1
547,292 + HUW76_02670 0.27 -0.2
547,292 + HUW76_02670 0.27 +0.2
547,292 - HUW76_02670 0.27 -0.6
547,292 - HUW76_02670 0.27 +1.3
547,420 - HUW76_02670 0.38 -0.5
547,433 - HUW76_02670 0.40 -1.4
547,433 - HUW76_02670 0.40 -0.3
547,473 - HUW76_02670 0.43 -0.2
547,473 - HUW76_02670 0.43 -0.1
547,556 - HUW76_02670 0.51 -0.6
547,566 - HUW76_02670 0.52 -0.5
547,586 + HUW76_02670 0.54 -0.1
547,622 + HUW76_02670 0.57 -0.1
547,622 + HUW76_02670 0.57 +0.0
547,627 + HUW76_02670 0.58 +0.9
547,640 - HUW76_02670 0.59 -0.1
547,640 - HUW76_02670 0.59 +0.0
547,662 + HUW76_02670 0.61 +0.5
547,694 + HUW76_02670 0.64 +0.6
547,694 + HUW76_02670 0.64 +0.6
547,746 - HUW76_02670 0.69 -0.4

Or see this region's nucleotide sequence