Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02600

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02590 and HUW76_02595 overlap by 4 nucleotidesHUW76_02595 and HUW76_02600 are separated by 11 nucleotidesHUW76_02600 and HUW76_02605 overlap by 8 nucleotides HUW76_02590: HUW76_02590 - Crp/Fnr family transcriptional regulator, at 526,605 to 527,258 _02590 HUW76_02595: HUW76_02595 - gamma-glutamyl-gamma-aminobutyrate hydrolase family protein, at 527,255 to 528,124 _02595 HUW76_02600: HUW76_02600 - response regulator transcription factor, at 528,136 to 528,858 _02600 HUW76_02605: HUW76_02605 - sensor histidine kinase, at 528,851 to 530,527 _02605 Position (kb) 528 529Strain fitness (log2 ratio) -1 0 1 2 3at 527.314 kb on + strandat 527.315 kb on + strandat 527.315 kb on + strandat 527.322 kb on - strandat 527.340 kb on - strandat 527.347 kb on + strand, within HUW76_02595at 527.347 kb on + strand, within HUW76_02595at 527.347 kb on + strand, within HUW76_02595at 527.347 kb on + strand, within HUW76_02595at 527.347 kb on + strand, within HUW76_02595at 527.355 kb on - strand, within HUW76_02595at 527.418 kb on - strand, within HUW76_02595at 527.462 kb on + strand, within HUW76_02595at 527.501 kb on - strand, within HUW76_02595at 527.550 kb on - strand, within HUW76_02595at 527.552 kb on + strand, within HUW76_02595at 527.552 kb on + strand, within HUW76_02595at 527.617 kb on + strand, within HUW76_02595at 527.625 kb on - strand, within HUW76_02595at 527.625 kb on - strand, within HUW76_02595at 527.642 kb on - strand, within HUW76_02595at 527.642 kb on - strand, within HUW76_02595at 527.669 kb on + strand, within HUW76_02595at 527.669 kb on + strand, within HUW76_02595at 527.684 kb on - strand, within HUW76_02595at 527.703 kb on - strand, within HUW76_02595at 527.782 kb on + strand, within HUW76_02595at 527.804 kb on + strand, within HUW76_02595at 527.804 kb on + strand, within HUW76_02595at 527.816 kb on + strand, within HUW76_02595at 527.817 kb on + strand, within HUW76_02595at 527.817 kb on + strand, within HUW76_02595at 527.846 kb on + strand, within HUW76_02595at 527.920 kb on - strand, within HUW76_02595at 527.920 kb on - strand, within HUW76_02595at 527.941 kb on + strand, within HUW76_02595at 527.965 kb on - strand, within HUW76_02595at 528.000 kb on - strand, within HUW76_02595at 528.000 kb on - strand, within HUW76_02595at 528.185 kb on + strandat 528.235 kb on - strand, within HUW76_02600at 528.243 kb on - strand, within HUW76_02600at 528.243 kb on - strand, within HUW76_02600at 528.248 kb on - strand, within HUW76_02600at 528.248 kb on - strand, within HUW76_02600at 528.517 kb on + strand, within HUW76_02600at 528.517 kb on + strand, within HUW76_02600at 528.587 kb on + strand, within HUW76_02600at 528.596 kb on + strand, within HUW76_02600at 528.596 kb on + strand, within HUW76_02600at 528.651 kb on - strand, within HUW76_02600at 528.651 kb on - strand, within HUW76_02600at 528.666 kb on + strand, within HUW76_02600at 528.666 kb on + strand, within HUW76_02600at 528.674 kb on - strand, within HUW76_02600at 528.674 kb on - strand, within HUW76_02600at 528.678 kb on - strand, within HUW76_02600at 528.711 kb on + strand, within HUW76_02600at 528.727 kb on - strand, within HUW76_02600at 528.735 kb on + strand, within HUW76_02600at 528.744 kb on - strand, within HUW76_02600at 528.753 kb on - strand, within HUW76_02600at 528.753 kb on - strand, within HUW76_02600at 528.753 kb on - strand, within HUW76_02600at 528.867 kb on + strandat 528.867 kb on + strandat 528.875 kb on - strandat 528.927 kb on + strandat 528.940 kb on + strandat 528.940 kb on + strandat 528.948 kb on - strandat 528.948 kb on - strandat 528.948 kb on - strandat 529.015 kb on + strandat 529.023 kb on - strand, within HUW76_02605at 529.023 kb on - strand, within HUW76_02605at 529.023 kb on - strand, within HUW76_02605at 529.036 kb on + strand, within HUW76_02605at 529.128 kb on - strand, within HUW76_02605at 529.128 kb on - strand, within HUW76_02605at 529.141 kb on - strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.276 kb on + strand, within HUW76_02605at 529.284 kb on - strand, within HUW76_02605at 529.284 kb on - strand, within HUW76_02605at 529.284 kb on - strand, within HUW76_02605at 529.284 kb on - strand, within HUW76_02605at 529.284 kb on - strand, within HUW76_02605at 529.284 kb on - strand, within HUW76_02605at 529.284 kb on - strand, within HUW76_02605at 529.335 kb on - strand, within HUW76_02605at 529.335 kb on - strand, within HUW76_02605at 529.391 kb on - strand, within HUW76_02605at 529.432 kb on - strand, within HUW76_02605at 529.432 kb on - strand, within HUW76_02605at 529.497 kb on + strand, within HUW76_02605at 529.738 kb on - strand, within HUW76_02605

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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527,314 + -0.2
527,315 + -0.5
527,315 + -0.2
527,322 - +2.4
527,340 - +1.6
527,347 + HUW76_02595 0.11 +0.4
527,347 + HUW76_02595 0.11 -0.5
527,347 + HUW76_02595 0.11 -0.3
527,347 + HUW76_02595 0.11 +0.2
527,347 + HUW76_02595 0.11 -0.3
527,355 - HUW76_02595 0.11 +1.1
527,418 - HUW76_02595 0.19 -0.3
527,462 + HUW76_02595 0.24 -0.4
527,501 - HUW76_02595 0.28 +0.2
527,550 - HUW76_02595 0.34 +1.1
527,552 + HUW76_02595 0.34 -0.3
527,552 + HUW76_02595 0.34 +0.1
527,617 + HUW76_02595 0.42 -0.4
527,625 - HUW76_02595 0.43 +1.1
527,625 - HUW76_02595 0.43 +2.1
527,642 - HUW76_02595 0.44 +1.4
527,642 - HUW76_02595 0.44 +0.8
527,669 + HUW76_02595 0.48 +1.3
527,669 + HUW76_02595 0.48 -0.3
527,684 - HUW76_02595 0.49 +1.0
527,703 - HUW76_02595 0.51 +0.9
527,782 + HUW76_02595 0.61 -0.5
527,804 + HUW76_02595 0.63 -0.3
527,804 + HUW76_02595 0.63 -0.4
527,816 + HUW76_02595 0.64 -0.1
527,817 + HUW76_02595 0.65 -0.2
527,817 + HUW76_02595 0.65 +0.1
527,846 + HUW76_02595 0.68 +0.1
527,920 - HUW76_02595 0.76 +0.6
527,920 - HUW76_02595 0.76 +0.7
527,941 + HUW76_02595 0.79 +0.2
527,965 - HUW76_02595 0.82 +0.4
528,000 - HUW76_02595 0.86 +0.7
528,000 - HUW76_02595 0.86 +0.8
528,185 + -0.7
528,235 - HUW76_02600 0.14 -0.6
528,243 - HUW76_02600 0.15 -0.5
528,243 - HUW76_02600 0.15 -0.8
528,248 - HUW76_02600 0.15 +0.2
528,248 - HUW76_02600 0.15 -0.6
528,517 + HUW76_02600 0.53 -0.9
528,517 + HUW76_02600 0.53 -1.2
528,587 + HUW76_02600 0.62 +0.6
528,596 + HUW76_02600 0.64 +0.5
528,596 + HUW76_02600 0.64 -0.2
528,651 - HUW76_02600 0.71 -0.2
528,651 - HUW76_02600 0.71 -1.4
528,666 + HUW76_02600 0.73 +0.1
528,666 + HUW76_02600 0.73 +2.0
528,674 - HUW76_02600 0.74 -0.6
528,674 - HUW76_02600 0.74 -0.4
528,678 - HUW76_02600 0.75 -0.7
528,711 + HUW76_02600 0.80 +1.6
528,727 - HUW76_02600 0.82 -0.2
528,735 + HUW76_02600 0.83 +1.0
528,744 - HUW76_02600 0.84 -1.2
528,753 - HUW76_02600 0.85 -0.7
528,753 - HUW76_02600 0.85 -0.6
528,753 - HUW76_02600 0.85 -0.7
528,867 + +0.1
528,867 + -1.0
528,875 - +0.2
528,927 + -0.6
528,940 + +1.1
528,940 + +0.3
528,948 - -1.0
528,948 - -0.8
528,948 - -0.3
529,015 + +0.4
529,023 - HUW76_02605 0.10 -0.1
529,023 - HUW76_02605 0.10 -1.0
529,023 - HUW76_02605 0.10 -0.1
529,036 + HUW76_02605 0.11 +0.4
529,128 - HUW76_02605 0.17 -0.3
529,128 - HUW76_02605 0.17 -0.3
529,141 - HUW76_02605 0.17 +0.5
529,276 + HUW76_02605 0.25 +1.7
529,276 + HUW76_02605 0.25 +0.8
529,276 + HUW76_02605 0.25 +0.0
529,276 + HUW76_02605 0.25 +0.2
529,276 + HUW76_02605 0.25 +1.1
529,276 + HUW76_02605 0.25 +0.6
529,276 + HUW76_02605 0.25 +0.6
529,276 + HUW76_02605 0.25 -0.2
529,276 + HUW76_02605 0.25 +0.4
529,276 + HUW76_02605 0.25 +0.6
529,276 + HUW76_02605 0.25 -0.3
529,284 - HUW76_02605 0.26 -0.5
529,284 - HUW76_02605 0.26 +0.5
529,284 - HUW76_02605 0.26 +0.1
529,284 - HUW76_02605 0.26 +0.4
529,284 - HUW76_02605 0.26 +0.5
529,284 - HUW76_02605 0.26 +0.4
529,284 - HUW76_02605 0.26 +0.5
529,335 - HUW76_02605 0.29 -1.2
529,335 - HUW76_02605 0.29 -1.0
529,391 - HUW76_02605 0.32 +2.8
529,432 - HUW76_02605 0.35 -1.0
529,432 - HUW76_02605 0.35 -0.1
529,497 + HUW76_02605 0.39 -0.2
529,738 - HUW76_02605 0.53 +0.0

Or see this region's nucleotide sequence