Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02590

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02585 and HUW76_02590 are separated by 396 nucleotidesHUW76_02590 and HUW76_02595 overlap by 4 nucleotidesHUW76_02595 and HUW76_02600 are separated by 11 nucleotides HUW76_02585: HUW76_02585 - SDR family NAD(P)-dependent oxidoreductase, at 525,456 to 526,208 _02585 HUW76_02590: HUW76_02590 - Crp/Fnr family transcriptional regulator, at 526,605 to 527,258 _02590 HUW76_02595: HUW76_02595 - gamma-glutamyl-gamma-aminobutyrate hydrolase family protein, at 527,255 to 528,124 _02595 HUW76_02600: HUW76_02600 - response regulator transcription factor, at 528,136 to 528,858 _02600 Position (kb) 526 527 528Strain fitness (log2 ratio) -2 -1 0 1 2at 525.629 kb on - strand, within HUW76_02585at 525.629 kb on - strand, within HUW76_02585at 525.801 kb on + strand, within HUW76_02585at 525.801 kb on + strand, within HUW76_02585at 525.809 kb on - strand, within HUW76_02585at 525.822 kb on + strand, within HUW76_02585at 525.830 kb on + strand, within HUW76_02585at 525.836 kb on + strand, within HUW76_02585at 525.841 kb on + strand, within HUW76_02585at 525.858 kb on + strand, within HUW76_02585at 525.866 kb on + strand, within HUW76_02585at 525.866 kb on + strand, within HUW76_02585at 525.866 kb on - strand, within HUW76_02585at 525.866 kb on - strand, within HUW76_02585at 525.909 kb on + strand, within HUW76_02585at 525.949 kb on + strand, within HUW76_02585at 525.957 kb on - strand, within HUW76_02585at 525.957 kb on - strand, within HUW76_02585at 525.961 kb on + strand, within HUW76_02585at 525.961 kb on + strand, within HUW76_02585at 526.057 kb on - strand, within HUW76_02585at 526.062 kb on - strand, within HUW76_02585at 526.062 kb on - strand, within HUW76_02585at 526.132 kb on - strand, within HUW76_02585at 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.164 kb on + strandat 526.171 kb on - strandat 526.171 kb on - strandat 526.172 kb on - strandat 526.172 kb on - strandat 526.172 kb on - strandat 526.172 kb on - strandat 526.172 kb on - strandat 526.172 kb on - strandat 526.172 kb on - strandat 526.172 kb on - strandat 526.175 kb on + strandat 526.175 kb on + strandat 526.183 kb on - strandat 526.185 kb on + strandat 526.185 kb on + strandat 526.185 kb on + strandat 526.185 kb on + strandat 526.251 kb on - strandat 526.267 kb on + strandat 526.597 kb on + strandat 526.597 kb on + strandat 526.597 kb on + strandat 526.597 kb on + strandat 526.597 kb on + strandat 526.621 kb on + strandat 526.621 kb on + strandat 526.968 kb on + strand, within HUW76_02590at 526.976 kb on - strand, within HUW76_02590at 526.976 kb on - strand, within HUW76_02590at 526.978 kb on + strand, within HUW76_02590at 526.986 kb on - strand, within HUW76_02590at 527.314 kb on + strandat 527.315 kb on + strandat 527.315 kb on + strandat 527.322 kb on - strandat 527.340 kb on - strandat 527.347 kb on + strand, within HUW76_02595at 527.347 kb on + strand, within HUW76_02595at 527.347 kb on + strand, within HUW76_02595at 527.347 kb on + strand, within HUW76_02595at 527.347 kb on + strand, within HUW76_02595at 527.355 kb on - strand, within HUW76_02595at 527.418 kb on - strand, within HUW76_02595at 527.462 kb on + strand, within HUW76_02595at 527.501 kb on - strand, within HUW76_02595at 527.550 kb on - strand, within HUW76_02595at 527.552 kb on + strand, within HUW76_02595at 527.552 kb on + strand, within HUW76_02595at 527.617 kb on + strand, within HUW76_02595at 527.625 kb on - strand, within HUW76_02595at 527.625 kb on - strand, within HUW76_02595at 527.642 kb on - strand, within HUW76_02595at 527.642 kb on - strand, within HUW76_02595at 527.669 kb on + strand, within HUW76_02595at 527.669 kb on + strand, within HUW76_02595at 527.684 kb on - strand, within HUW76_02595at 527.703 kb on - strand, within HUW76_02595at 527.782 kb on + strand, within HUW76_02595at 527.804 kb on + strand, within HUW76_02595at 527.804 kb on + strand, within HUW76_02595at 527.816 kb on + strand, within HUW76_02595at 527.817 kb on + strand, within HUW76_02595at 527.817 kb on + strand, within HUW76_02595at 527.846 kb on + strand, within HUW76_02595at 527.920 kb on - strand, within HUW76_02595at 527.920 kb on - strand, within HUW76_02595at 527.941 kb on + strand, within HUW76_02595at 527.965 kb on - strand, within HUW76_02595at 528.000 kb on - strand, within HUW76_02595at 528.000 kb on - strand, within HUW76_02595at 528.185 kb on + strandat 528.235 kb on - strand, within HUW76_02600at 528.243 kb on - strand, within HUW76_02600at 528.243 kb on - strand, within HUW76_02600at 528.248 kb on - strand, within HUW76_02600at 528.248 kb on - strand, within HUW76_02600

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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525,629 - HUW76_02585 0.23 -0.1
525,629 - HUW76_02585 0.23 +0.2
525,801 + HUW76_02585 0.46 -0.8
525,801 + HUW76_02585 0.46 +0.6
525,809 - HUW76_02585 0.47 +0.7
525,822 + HUW76_02585 0.49 +1.0
525,830 + HUW76_02585 0.50 +0.5
525,836 + HUW76_02585 0.50 +0.3
525,841 + HUW76_02585 0.51 +2.0
525,858 + HUW76_02585 0.53 -1.1
525,866 + HUW76_02585 0.54 +0.7
525,866 + HUW76_02585 0.54 +0.3
525,866 - HUW76_02585 0.54 -0.7
525,866 - HUW76_02585 0.54 -0.3
525,909 + HUW76_02585 0.60 +0.3
525,949 + HUW76_02585 0.65 +0.3
525,957 - HUW76_02585 0.67 -1.1
525,957 - HUW76_02585 0.67 +0.1
525,961 + HUW76_02585 0.67 -0.1
525,961 + HUW76_02585 0.67 -0.7
526,057 - HUW76_02585 0.80 +0.0
526,062 - HUW76_02585 0.80 +0.9
526,062 - HUW76_02585 0.80 -0.6
526,132 - HUW76_02585 0.90 -0.6
526,164 + +0.0
526,164 + +0.3
526,164 + +0.0
526,164 + -0.4
526,164 + +0.2
526,164 + -0.1
526,164 + +1.1
526,164 + +0.0
526,164 + -0.7
526,164 + -0.1
526,164 + -0.5
526,164 + -0.2
526,164 + -0.6
526,164 + -0.0
526,164 + +0.3
526,164 + -0.1
526,164 + -0.1
526,164 + +0.0
526,164 + +0.4
526,171 - +1.0
526,171 - -0.5
526,172 - -0.1
526,172 - -0.4
526,172 - -0.4
526,172 - -0.1
526,172 - -0.2
526,172 - -0.6
526,172 - -0.9
526,172 - -1.1
526,175 + +1.6
526,175 + -0.4
526,183 - -2.5
526,185 + -0.6
526,185 + +0.0
526,185 + -0.5
526,185 + -1.0
526,251 - +0.2
526,267 + -0.7
526,597 + -1.7
526,597 + -0.6
526,597 + -0.4
526,597 + -1.2
526,597 + -1.1
526,621 + +2.4
526,621 + +1.7
526,968 + HUW76_02590 0.56 -1.3
526,976 - HUW76_02590 0.57 +0.4
526,976 - HUW76_02590 0.57 -0.2
526,978 + HUW76_02590 0.57 -0.4
526,986 - HUW76_02590 0.58 -0.3
527,314 + -0.2
527,315 + -0.5
527,315 + -0.2
527,322 - +2.4
527,340 - +1.6
527,347 + HUW76_02595 0.11 +0.4
527,347 + HUW76_02595 0.11 -0.5
527,347 + HUW76_02595 0.11 -0.3
527,347 + HUW76_02595 0.11 +0.2
527,347 + HUW76_02595 0.11 -0.3
527,355 - HUW76_02595 0.11 +1.1
527,418 - HUW76_02595 0.19 -0.3
527,462 + HUW76_02595 0.24 -0.4
527,501 - HUW76_02595 0.28 +0.2
527,550 - HUW76_02595 0.34 +1.1
527,552 + HUW76_02595 0.34 -0.3
527,552 + HUW76_02595 0.34 +0.1
527,617 + HUW76_02595 0.42 -0.4
527,625 - HUW76_02595 0.43 +1.1
527,625 - HUW76_02595 0.43 +2.1
527,642 - HUW76_02595 0.44 +1.4
527,642 - HUW76_02595 0.44 +0.8
527,669 + HUW76_02595 0.48 +1.3
527,669 + HUW76_02595 0.48 -0.3
527,684 - HUW76_02595 0.49 +1.0
527,703 - HUW76_02595 0.51 +0.9
527,782 + HUW76_02595 0.61 -0.5
527,804 + HUW76_02595 0.63 -0.3
527,804 + HUW76_02595 0.63 -0.4
527,816 + HUW76_02595 0.64 -0.1
527,817 + HUW76_02595 0.65 -0.2
527,817 + HUW76_02595 0.65 +0.1
527,846 + HUW76_02595 0.68 +0.1
527,920 - HUW76_02595 0.76 +0.6
527,920 - HUW76_02595 0.76 +0.7
527,941 + HUW76_02595 0.79 +0.2
527,965 - HUW76_02595 0.82 +0.4
528,000 - HUW76_02595 0.86 +0.7
528,000 - HUW76_02595 0.86 +0.8
528,185 + -0.7
528,235 - HUW76_02600 0.14 -0.6
528,243 - HUW76_02600 0.15 -0.5
528,243 - HUW76_02600 0.15 -0.8
528,248 - HUW76_02600 0.15 +0.2
528,248 - HUW76_02600 0.15 -0.6

Or see this region's nucleotide sequence