Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02455

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02450 and HUW76_02455 are separated by 200 nucleotidesHUW76_02455 and HUW76_02460 overlap by 17 nucleotides HUW76_02450: HUW76_02450 - IS200/IS605 family element transposase accessory protein TnpB, at 490,661 to 491,764 _02450 HUW76_02455: HUW76_02455 - helix-turn-helix domain-containing protein, at 491,965 to 492,396 _02455 HUW76_02460: HUW76_02460 - sensor histidine kinase, at 492,380 to 494,038 _02460 Position (kb) 491 492 493Strain fitness (log2 ratio) -1 0 1 2at 491.105 kb on - strand, within HUW76_02450at 491.148 kb on + strand, within HUW76_02450at 491.301 kb on + strand, within HUW76_02450at 491.662 kb on + strandat 491.662 kb on + strandat 491.680 kb on + strandat 491.680 kb on + strandat 491.682 kb on + strandat 491.682 kb on + strandat 491.698 kb on - strandat 491.700 kb on - strandat 491.700 kb on - strandat 491.714 kb on + strandat 491.714 kb on + strandat 491.735 kb on + strandat 491.735 kb on + strandat 491.826 kb on + strandat 491.826 kb on + strandat 491.827 kb on + strandat 491.827 kb on + strandat 491.908 kb on - strandat 492.040 kb on + strand, within HUW76_02455at 492.050 kb on - strand, within HUW76_02455at 492.050 kb on - strand, within HUW76_02455at 492.096 kb on + strand, within HUW76_02455at 492.096 kb on + strand, within HUW76_02455at 492.104 kb on - strand, within HUW76_02455at 492.106 kb on - strand, within HUW76_02455at 492.106 kb on - strand, within HUW76_02455at 492.106 kb on - strand, within HUW76_02455at 492.106 kb on - strand, within HUW76_02455at 492.106 kb on - strand, within HUW76_02455at 492.130 kb on - strand, within HUW76_02455at 492.130 kb on - strand, within HUW76_02455at 492.204 kb on + strand, within HUW76_02455at 492.370 kb on - strandat 492.370 kb on - strandat 492.393 kb on + strandat 492.398 kb on + strandat 492.490 kb on + strandat 492.490 kb on + strandat 492.514 kb on + strandat 492.514 kb on + strandat 492.527 kb on - strandat 492.527 kb on - strandat 492.528 kb on - strandat 492.528 kb on - strandat 492.544 kb on + strandat 492.549 kb on + strand, within HUW76_02460at 492.578 kb on + strand, within HUW76_02460at 492.586 kb on - strand, within HUW76_02460at 492.586 kb on - strand, within HUW76_02460at 492.587 kb on - strand, within HUW76_02460at 492.587 kb on - strand, within HUW76_02460at 492.603 kb on + strand, within HUW76_02460at 492.611 kb on + strand, within HUW76_02460at 492.611 kb on + strand, within HUW76_02460at 492.611 kb on + strand, within HUW76_02460at 492.611 kb on + strand, within HUW76_02460at 492.616 kb on - strand, within HUW76_02460at 492.619 kb on - strand, within HUW76_02460at 492.684 kb on + strand, within HUW76_02460at 492.684 kb on + strand, within HUW76_02460at 492.692 kb on - strand, within HUW76_02460at 492.788 kb on + strand, within HUW76_02460at 492.788 kb on + strand, within HUW76_02460at 492.817 kb on + strand, within HUW76_02460at 492.817 kb on + strand, within HUW76_02460at 492.817 kb on + strand, within HUW76_02460at 492.825 kb on - strand, within HUW76_02460at 492.829 kb on + strand, within HUW76_02460at 492.829 kb on + strand, within HUW76_02460at 492.970 kb on - strand, within HUW76_02460at 492.970 kb on - strand, within HUW76_02460at 492.970 kb on - strand, within HUW76_02460at 492.970 kb on - strand, within HUW76_02460at 493.024 kb on + strand, within HUW76_02460at 493.024 kb on + strand, within HUW76_02460at 493.024 kb on + strand, within HUW76_02460at 493.024 kb on + strand, within HUW76_02460at 493.109 kb on + strand, within HUW76_02460at 493.117 kb on - strand, within HUW76_02460at 493.147 kb on - strand, within HUW76_02460at 493.163 kb on - strand, within HUW76_02460at 493.163 kb on - strand, within HUW76_02460at 493.168 kb on - strand, within HUW76_02460at 493.283 kb on + strand, within HUW76_02460at 493.286 kb on - strand, within HUW76_02460at 493.294 kb on - strand, within HUW76_02460at 493.316 kb on + strand, within HUW76_02460at 493.317 kb on + strand, within HUW76_02460at 493.317 kb on + strand, within HUW76_02460

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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491,105 - HUW76_02450 0.40 -0.1
491,148 + HUW76_02450 0.44 -0.2
491,301 + HUW76_02450 0.58 -0.2
491,662 + -0.4
491,662 + -0.6
491,680 + -0.3
491,680 + -0.5
491,682 + -0.3
491,682 + -1.1
491,698 - -1.0
491,700 - +0.9
491,700 - +0.0
491,714 + +1.0
491,714 + +0.3
491,735 + +0.0
491,735 + -0.7
491,826 + -0.4
491,826 + -0.5
491,827 + +0.4
491,827 + -0.7
491,908 - -0.4
492,040 + HUW76_02455 0.17 -0.3
492,050 - HUW76_02455 0.20 +0.5
492,050 - HUW76_02455 0.20 +0.3
492,096 + HUW76_02455 0.30 -0.7
492,096 + HUW76_02455 0.30 +0.1
492,104 - HUW76_02455 0.32 -0.3
492,106 - HUW76_02455 0.33 +1.0
492,106 - HUW76_02455 0.33 +0.4
492,106 - HUW76_02455 0.33 +0.1
492,106 - HUW76_02455 0.33 +1.0
492,106 - HUW76_02455 0.33 +0.4
492,130 - HUW76_02455 0.38 -0.2
492,130 - HUW76_02455 0.38 +0.3
492,204 + HUW76_02455 0.55 -0.3
492,370 - +0.9
492,370 - -0.1
492,393 + +0.0
492,398 + -0.2
492,490 + -0.8
492,490 + -0.3
492,514 + -0.4
492,514 + -1.5
492,527 - -0.4
492,527 - +0.1
492,528 - +0.0
492,528 - -0.2
492,544 + -0.2
492,549 + HUW76_02460 0.10 -0.2
492,578 + HUW76_02460 0.12 +0.0
492,586 - HUW76_02460 0.12 +0.2
492,586 - HUW76_02460 0.12 +0.9
492,587 - HUW76_02460 0.12 +1.2
492,587 - HUW76_02460 0.12 +1.0
492,603 + HUW76_02460 0.13 +0.1
492,611 + HUW76_02460 0.14 +0.3
492,611 + HUW76_02460 0.14 -0.3
492,611 + HUW76_02460 0.14 +0.2
492,611 + HUW76_02460 0.14 -0.4
492,616 - HUW76_02460 0.14 +0.1
492,619 - HUW76_02460 0.14 +1.5
492,684 + HUW76_02460 0.18 -1.1
492,684 + HUW76_02460 0.18 -0.7
492,692 - HUW76_02460 0.19 +0.3
492,788 + HUW76_02460 0.25 -0.2
492,788 + HUW76_02460 0.25 -0.3
492,817 + HUW76_02460 0.26 +0.6
492,817 + HUW76_02460 0.26 -0.4
492,817 + HUW76_02460 0.26 +0.1
492,825 - HUW76_02460 0.27 +1.8
492,829 + HUW76_02460 0.27 -0.1
492,829 + HUW76_02460 0.27 -0.1
492,970 - HUW76_02460 0.36 +1.2
492,970 - HUW76_02460 0.36 -0.4
492,970 - HUW76_02460 0.36 +1.6
492,970 - HUW76_02460 0.36 +0.8
493,024 + HUW76_02460 0.39 -0.0
493,024 + HUW76_02460 0.39 +0.1
493,024 + HUW76_02460 0.39 +0.0
493,024 + HUW76_02460 0.39 +0.1
493,109 + HUW76_02460 0.44 -0.0
493,117 - HUW76_02460 0.44 -0.1
493,147 - HUW76_02460 0.46 +0.8
493,163 - HUW76_02460 0.47 +0.3
493,163 - HUW76_02460 0.47 +0.7
493,168 - HUW76_02460 0.47 +0.5
493,283 + HUW76_02460 0.54 -0.8
493,286 - HUW76_02460 0.55 +1.0
493,294 - HUW76_02460 0.55 +0.8
493,316 + HUW76_02460 0.56 -0.4
493,317 + HUW76_02460 0.56 +0.5
493,317 + HUW76_02460 0.56 -0.3

Or see this region's nucleotide sequence