Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02430

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02425 and HUW76_02430 are separated by 294 nucleotidesHUW76_02430 and HUW76_02435 are separated by 315 nucleotidesHUW76_02435 and HUW76_02440 are separated by 26 nucleotides HUW76_02425: HUW76_02425 - AAA family ATPase, at 485,614 to 486,921 _02425 HUW76_02430: HUW76_02430 - cytochrome c biogenesis protein CcdA, at 487,216 to 487,869 _02430 HUW76_02435: HUW76_02435 - redoxin family protein, at 488,185 to 488,829 _02435 HUW76_02440: HUW76_02440 - peptide-methionine (R)-S-oxide reductase MsrB, at 488,856 to 489,782 _02440 Position (kb) 487 488Strain fitness (log2 ratio) -2 -1 0 1 2 3at 486.317 kb on - strand, within HUW76_02425at 486.459 kb on + strand, within HUW76_02425at 486.676 kb on - strand, within HUW76_02425at 486.727 kb on - strand, within HUW76_02425at 486.736 kb on + strand, within HUW76_02425at 486.736 kb on + strand, within HUW76_02425at 486.824 kb on + strandat 486.824 kb on + strandat 486.862 kb on + strandat 486.870 kb on - strandat 486.870 kb on - strandat 486.870 kb on - strandat 487.053 kb on - strandat 487.053 kb on - strandat 487.053 kb on - strandat 487.063 kb on - strandat 487.315 kb on - strand, within HUW76_02430at 487.317 kb on + strand, within HUW76_02430at 487.317 kb on + strand, within HUW76_02430at 487.317 kb on + strand, within HUW76_02430at 487.317 kb on + strand, within HUW76_02430at 487.317 kb on + strand, within HUW76_02430at 487.325 kb on - strand, within HUW76_02430at 487.325 kb on - strand, within HUW76_02430at 487.325 kb on - strand, within HUW76_02430at 487.325 kb on - strand, within HUW76_02430at 487.325 kb on - strand, within HUW76_02430at 487.342 kb on + strand, within HUW76_02430at 487.342 kb on + strand, within HUW76_02430at 487.348 kb on - strand, within HUW76_02430at 487.412 kb on + strand, within HUW76_02430at 487.417 kb on + strand, within HUW76_02430at 487.425 kb on - strand, within HUW76_02430at 487.549 kb on + strand, within HUW76_02430at 487.559 kb on + strand, within HUW76_02430at 487.559 kb on + strand, within HUW76_02430at 487.612 kb on - strand, within HUW76_02430at 487.619 kb on + strand, within HUW76_02430at 487.621 kb on - strand, within HUW76_02430at 487.631 kb on + strand, within HUW76_02430at 487.631 kb on + strand, within HUW76_02430at 487.639 kb on - strand, within HUW76_02430at 487.681 kb on + strand, within HUW76_02430at 487.681 kb on + strand, within HUW76_02430at 487.681 kb on + strand, within HUW76_02430at 487.689 kb on - strand, within HUW76_02430at 487.689 kb on - strand, within HUW76_02430at 487.699 kb on + strand, within HUW76_02430at 487.717 kb on + strand, within HUW76_02430at 487.717 kb on + strand, within HUW76_02430at 487.726 kb on + strand, within HUW76_02430at 487.726 kb on + strand, within HUW76_02430at 487.726 kb on + strand, within HUW76_02430at 487.726 kb on + strand, within HUW76_02430at 487.734 kb on - strand, within HUW76_02430at 487.734 kb on - strand, within HUW76_02430at 487.734 kb on - strand, within HUW76_02430at 487.790 kb on - strand, within HUW76_02430at 487.839 kb on - strandat 487.839 kb on - strandat 487.886 kb on - strandat 487.992 kb on + strandat 487.992 kb on + strandat 488.078 kb on + strandat 488.172 kb on - strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.182 kb on - strandat 488.182 kb on - strandat 488.215 kb on + strandat 488.243 kb on + strandat 488.264 kb on + strand, within HUW76_02435at 488.264 kb on + strand, within HUW76_02435at 488.264 kb on + strand, within HUW76_02435at 488.340 kb on + strand, within HUW76_02435at 488.391 kb on - strand, within HUW76_02435at 488.438 kb on + strand, within HUW76_02435at 488.440 kb on - strand, within HUW76_02435at 488.448 kb on + strand, within HUW76_02435at 488.507 kb on + strand, within HUW76_02435at 488.507 kb on + strand, within HUW76_02435at 488.549 kb on + strand, within HUW76_02435at 488.549 kb on + strand, within HUW76_02435at 488.581 kb on + strand, within HUW76_02435

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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486,317 - HUW76_02425 0.54 -0.3
486,459 + HUW76_02425 0.65 +0.7
486,676 - HUW76_02425 0.81 +0.3
486,727 - HUW76_02425 0.85 +0.3
486,736 + HUW76_02425 0.86 -0.7
486,736 + HUW76_02425 0.86 +0.7
486,824 + +1.4
486,824 + +0.5
486,862 + +0.2
486,870 - -0.4
486,870 - -0.1
486,870 - -1.3
487,053 - +0.7
487,053 - +0.6
487,053 - -0.3
487,063 - -0.2
487,315 - HUW76_02430 0.15 +0.6
487,317 + HUW76_02430 0.15 -0.2
487,317 + HUW76_02430 0.15 -0.0
487,317 + HUW76_02430 0.15 -0.1
487,317 + HUW76_02430 0.15 +0.4
487,317 + HUW76_02430 0.15 -0.1
487,325 - HUW76_02430 0.17 +0.3
487,325 - HUW76_02430 0.17 -0.4
487,325 - HUW76_02430 0.17 -0.1
487,325 - HUW76_02430 0.17 -0.6
487,325 - HUW76_02430 0.17 +0.5
487,342 + HUW76_02430 0.19 +0.1
487,342 + HUW76_02430 0.19 +0.4
487,348 - HUW76_02430 0.20 -0.2
487,412 + HUW76_02430 0.30 -0.8
487,417 + HUW76_02430 0.31 +0.0
487,425 - HUW76_02430 0.32 +0.2
487,549 + HUW76_02430 0.51 -0.0
487,559 + HUW76_02430 0.52 -0.4
487,559 + HUW76_02430 0.52 +3.0
487,612 - HUW76_02430 0.61 +0.0
487,619 + HUW76_02430 0.62 -0.1
487,621 - HUW76_02430 0.62 +0.6
487,631 + HUW76_02430 0.63 -0.0
487,631 + HUW76_02430 0.63 -2.2
487,639 - HUW76_02430 0.65 +0.2
487,681 + HUW76_02430 0.71 -1.4
487,681 + HUW76_02430 0.71 -0.2
487,681 + HUW76_02430 0.71 +0.0
487,689 - HUW76_02430 0.72 +0.8
487,689 - HUW76_02430 0.72 +0.2
487,699 + HUW76_02430 0.74 -0.6
487,717 + HUW76_02430 0.77 +0.3
487,717 + HUW76_02430 0.77 -0.1
487,726 + HUW76_02430 0.78 +0.4
487,726 + HUW76_02430 0.78 -0.7
487,726 + HUW76_02430 0.78 -0.5
487,726 + HUW76_02430 0.78 +0.7
487,734 - HUW76_02430 0.79 +0.0
487,734 - HUW76_02430 0.79 +0.0
487,734 - HUW76_02430 0.79 +0.3
487,790 - HUW76_02430 0.88 +0.4
487,839 - +0.2
487,839 - +0.0
487,886 - +0.7
487,992 + -0.3
487,992 + +0.3
488,078 + -0.1
488,172 - -0.2
488,174 + +0.4
488,174 + -0.4
488,174 + -0.4
488,174 + -0.3
488,182 - +0.4
488,182 - -0.3
488,215 + -0.3
488,243 + -0.3
488,264 + HUW76_02435 0.12 -1.1
488,264 + HUW76_02435 0.12 -0.2
488,264 + HUW76_02435 0.12 -0.7
488,340 + HUW76_02435 0.24 -0.2
488,391 - HUW76_02435 0.32 +1.7
488,438 + HUW76_02435 0.39 -0.2
488,440 - HUW76_02435 0.40 +0.3
488,448 + HUW76_02435 0.41 -0.7
488,507 + HUW76_02435 0.50 +0.4
488,507 + HUW76_02435 0.50 +0.4
488,549 + HUW76_02435 0.56 -0.5
488,549 + HUW76_02435 0.56 -0.2
488,581 + HUW76_02435 0.61 -0.6

Or see this region's nucleotide sequence