Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_02305 and HUW76_02310 are separated by 56 nucleotides HUW76_02310 and HUW76_02315 are separated by 249 nucleotides HUW76_02315 and HUW76_02320 overlap by 13 nucleotides HUW76_02320 and HUW76_02325 overlap by 20 nucleotides
HUW76_02305: HUW76_02305 - hypothetical protein, at 466,174 to 466,458
_02305
HUW76_02310: HUW76_02310 - hypothetical protein, at 466,515 to 467,042
_02310
HUW76_02315: HUW76_02315 - hypothetical protein, at 467,292 to 467,783
_02315
HUW76_02320: HUW76_02320 - hypothetical protein, at 467,771 to 468,361
_02320
HUW76_02325: HUW76_02325 - hypothetical protein, at 468,342 to 469,310
_02325
Position (kb) 467
468 Strain fitness (log2 ratio) -1
0
1
2 at 466.312 kb on - strand, within HUW76_02305 at 466.312 kb on - strand, within HUW76_02305 at 466.408 kb on + strand, within HUW76_02305 at 466.471 kb on + strand at 466.471 kb on + strand at 466.510 kb on + strand at 466.546 kb on + strand at 466.648 kb on - strand, within HUW76_02310 at 466.648 kb on - strand, within HUW76_02310 at 466.673 kb on + strand, within HUW76_02310 at 466.681 kb on - strand, within HUW76_02310 at 466.681 kb on - strand, within HUW76_02310 at 466.712 kb on + strand, within HUW76_02310 at 466.712 kb on + strand, within HUW76_02310 at 466.721 kb on + strand, within HUW76_02310 at 466.721 kb on + strand, within HUW76_02310 at 466.861 kb on + strand, within HUW76_02310 at 467.067 kb on + strand at 467.083 kb on - strand at 467.219 kb on - strand at 467.251 kb on + strand at 467.265 kb on - strand at 467.265 kb on - strand at 467.390 kb on + strand, within HUW76_02315 at 467.390 kb on + strand, within HUW76_02315 at 467.426 kb on + strand, within HUW76_02315 at 467.491 kb on - strand, within HUW76_02315 at 467.496 kb on - strand, within HUW76_02315 at 467.648 kb on + strand, within HUW76_02315 at 467.688 kb on + strand, within HUW76_02315 at 467.753 kb on + strand at 467.753 kb on + strand at 467.753 kb on + strand at 467.761 kb on - strand at 467.761 kb on - strand at 467.840 kb on + strand, within HUW76_02320 at 467.840 kb on + strand, within HUW76_02320 at 467.848 kb on - strand, within HUW76_02320 at 467.854 kb on + strand, within HUW76_02320 at 467.894 kb on + strand, within HUW76_02320 at 468.144 kb on + strand, within HUW76_02320 at 468.154 kb on - strand, within HUW76_02320 at 468.202 kb on + strand, within HUW76_02320 at 468.210 kb on - strand, within HUW76_02320 at 468.210 kb on - strand, within HUW76_02320 at 468.212 kb on + strand, within HUW76_02320 at 468.212 kb on + strand, within HUW76_02320 at 468.221 kb on - strand, within HUW76_02320 at 468.221 kb on - strand, within HUW76_02320 at 468.248 kb on + strand, within HUW76_02320 at 468.302 kb on + strand, within HUW76_02320 at 468.302 kb on + strand, within HUW76_02320 at 468.310 kb on - strand at 468.347 kb on + strand at 468.347 kb on + strand at 468.364 kb on - strand at 468.364 kb on - strand at 468.457 kb on + strand, within HUW76_02325 at 468.494 kb on - strand, within HUW76_02325 at 468.529 kb on + strand, within HUW76_02325 at 468.769 kb on + strand, within HUW76_02325 at 468.769 kb on + strand, within HUW76_02325 at 468.778 kb on + strand, within HUW76_02325 at 468.778 kb on + strand, within HUW76_02325 at 468.778 kb on + strand, within HUW76_02325 at 468.778 kb on + strand, within HUW76_02325 at 468.778 kb on + strand, within HUW76_02325 at 468.778 kb on + strand, within HUW76_02325 at 468.778 kb on + strand, within HUW76_02325 at 468.778 kb on + strand, within HUW76_02325 at 468.778 kb on + strand, within HUW76_02325 at 468.778 kb on + strand, within HUW76_02325
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 466,312 - HUW76_02305 0.48 +1.9 466,312 - HUW76_02305 0.48 +0.0 466,408 + HUW76_02305 0.82 +0.4 466,471 + -0.6 466,471 + -0.3 466,510 + -0.3 466,546 + -0.5 466,648 - HUW76_02310 0.25 +0.4 466,648 - HUW76_02310 0.25 +0.0 466,673 + HUW76_02310 0.30 +0.5 466,681 - HUW76_02310 0.31 +0.4 466,681 - HUW76_02310 0.31 +1.1 466,712 + HUW76_02310 0.37 +0.3 466,712 + HUW76_02310 0.37 -0.5 466,721 + HUW76_02310 0.39 -0.6 466,721 + HUW76_02310 0.39 +0.4 466,861 + HUW76_02310 0.66 -0.3 467,067 + -0.2 467,083 - -0.5 467,219 - -0.6 467,251 + -0.2 467,265 - +0.0 467,265 - -0.4 467,390 + HUW76_02315 0.20 -0.9 467,390 + HUW76_02315 0.20 -0.2 467,426 + HUW76_02315 0.27 -0.4 467,491 - HUW76_02315 0.40 +0.1 467,496 - HUW76_02315 0.41 -0.4 467,648 + HUW76_02315 0.72 -0.5 467,688 + HUW76_02315 0.80 +1.0 467,753 + +0.5 467,753 + -0.5 467,753 + -0.2 467,761 - +2.0 467,761 - +0.0 467,840 + HUW76_02320 0.12 +0.0 467,840 + HUW76_02320 0.12 -0.1 467,848 - HUW76_02320 0.13 +1.6 467,854 + HUW76_02320 0.14 -0.3 467,894 + HUW76_02320 0.21 -0.7 468,144 + HUW76_02320 0.63 -0.3 468,154 - HUW76_02320 0.65 +0.1 468,202 + HUW76_02320 0.73 -0.6 468,210 - HUW76_02320 0.74 +0.3 468,210 - HUW76_02320 0.74 +0.4 468,212 + HUW76_02320 0.75 -0.6 468,212 + HUW76_02320 0.75 -0.4 468,221 - HUW76_02320 0.76 -1.0 468,221 - HUW76_02320 0.76 +0.4 468,248 + HUW76_02320 0.81 +2.2 468,302 + HUW76_02320 0.90 +0.3 468,302 + HUW76_02320 0.90 -0.3 468,310 - +0.2 468,347 + -0.2 468,347 + -0.8 468,364 - +1.4 468,364 - +1.2 468,457 + HUW76_02325 0.12 -0.5 468,494 - HUW76_02325 0.16 -0.4 468,529 + HUW76_02325 0.19 -0.1 468,769 + HUW76_02325 0.44 -0.1 468,769 + HUW76_02325 0.44 +1.0 468,778 + HUW76_02325 0.45 +1.0 468,778 + HUW76_02325 0.45 -0.5 468,778 + HUW76_02325 0.45 +0.2 468,778 + HUW76_02325 0.45 -0.1 468,778 + HUW76_02325 0.45 +0.3 468,778 + HUW76_02325 0.45 +0.1 468,778 + HUW76_02325 0.45 -0.2 468,778 + HUW76_02325 0.45 -0.4 468,778 + HUW76_02325 0.45 -0.8 468,778 + HUW76_02325 0.45 -0.4
Or see this region's nucleotide sequence