Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02280

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02275 and HUW76_02280 are separated by 118 nucleotidesHUW76_02280 and HUW76_02285 are separated by 197 nucleotides HUW76_02275: HUW76_02275 - DNA integrity scanning protein DisA, at 457,343 to 458,392 _02275 HUW76_02280: HUW76_02280 - MATE family efflux transporter, at 458,511 to 459,851 _02280 HUW76_02285: HUW76_02285 - methylenetetrahydrofolate reductase [NAD(P)H], at 460,049 to 460,918 _02285 Position (kb) 458 459 460Strain fitness (log2 ratio) -1 0 1at 458.338 kb on + strandat 458.338 kb on + strandat 458.402 kb on + strandat 458.402 kb on + strandat 458.412 kb on - strandat 458.420 kb on - strandat 458.420 kb on - strandat 458.421 kb on + strandat 458.504 kb on + strandat 458.504 kb on + strandat 458.593 kb on - strandat 458.593 kb on - strandat 458.622 kb on + strandat 458.622 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.743 kb on + strand, within HUW76_02280at 458.743 kb on + strand, within HUW76_02280at 458.753 kb on + strand, within HUW76_02280at 458.753 kb on + strand, within HUW76_02280at 458.753 kb on + strand, within HUW76_02280at 458.753 kb on + strand, within HUW76_02280at 458.753 kb on + strand, within HUW76_02280at 458.753 kb on + strand, within HUW76_02280at 458.761 kb on - strand, within HUW76_02280at 458.761 kb on - strand, within HUW76_02280at 458.808 kb on + strand, within HUW76_02280at 458.808 kb on + strand, within HUW76_02280at 458.814 kb on + strand, within HUW76_02280at 458.847 kb on + strand, within HUW76_02280at 458.882 kb on + strand, within HUW76_02280at 458.920 kb on - strand, within HUW76_02280at 458.943 kb on + strand, within HUW76_02280at 458.943 kb on + strand, within HUW76_02280at 458.946 kb on - strand, within HUW76_02280at 458.951 kb on - strand, within HUW76_02280at 459.004 kb on + strand, within HUW76_02280at 459.004 kb on + strand, within HUW76_02280at 459.035 kb on - strand, within HUW76_02280at 459.066 kb on - strand, within HUW76_02280at 459.088 kb on + strand, within HUW76_02280at 459.088 kb on + strand, within HUW76_02280at 459.127 kb on + strand, within HUW76_02280at 459.137 kb on + strand, within HUW76_02280at 459.140 kb on + strand, within HUW76_02280at 459.140 kb on - strand, within HUW76_02280at 459.191 kb on + strand, within HUW76_02280at 459.191 kb on + strand, within HUW76_02280at 459.263 kb on + strand, within HUW76_02280at 459.263 kb on + strand, within HUW76_02280at 459.270 kb on + strand, within HUW76_02280at 459.270 kb on + strand, within HUW76_02280at 459.275 kb on + strand, within HUW76_02280at 459.293 kb on + strand, within HUW76_02280at 459.301 kb on - strand, within HUW76_02280at 459.301 kb on - strand, within HUW76_02280at 459.375 kb on + strand, within HUW76_02280at 459.375 kb on + strand, within HUW76_02280at 459.375 kb on + strand, within HUW76_02280at 459.423 kb on + strand, within HUW76_02280at 459.423 kb on + strand, within HUW76_02280at 459.426 kb on - strand, within HUW76_02280at 459.595 kb on + strand, within HUW76_02280at 459.612 kb on + strand, within HUW76_02280at 459.612 kb on + strand, within HUW76_02280at 459.612 kb on + strand, within HUW76_02280at 459.614 kb on + strand, within HUW76_02280at 459.614 kb on + strand, within HUW76_02280at 459.614 kb on + strand, within HUW76_02280at 459.614 kb on + strand, within HUW76_02280at 459.620 kb on - strand, within HUW76_02280at 459.620 kb on - strand, within HUW76_02280at 459.620 kb on - strand, within HUW76_02280at 459.620 kb on - strand, within HUW76_02280at 459.622 kb on - strand, within HUW76_02280at 459.624 kb on + strand, within HUW76_02280at 459.655 kb on + strand, within HUW76_02280at 459.655 kb on + strand, within HUW76_02280at 459.692 kb on + strand, within HUW76_02280at 459.692 kb on + strand, within HUW76_02280at 459.697 kb on + strand, within HUW76_02280at 459.713 kb on - strand, within HUW76_02280at 459.737 kb on + strandat 459.737 kb on + strandat 459.738 kb on + strandat 459.739 kb on + strandat 459.739 kb on + strandat 459.739 kb on + strandat 459.746 kb on - strandat 459.746 kb on - strandat 459.747 kb on - strandat 459.747 kb on - strandat 459.785 kb on + strandat 459.785 kb on + strandat 459.785 kb on + strandat 459.785 kb on + strandat 459.785 kb on + strandat 459.851 kb on + strandat 459.918 kb on - strandat 459.918 kb on - strandat 459.920 kb on - strandat 459.927 kb on - strandat 459.946 kb on + strandat 459.951 kb on + strandat 459.966 kb on + strandat 459.969 kb on - strandat 460.001 kb on + strandat 460.080 kb on - strandat 460.123 kb on - strandat 460.136 kb on + strand, within HUW76_02285at 460.143 kb on - strand, within HUW76_02285at 460.144 kb on - strand, within HUW76_02285at 460.144 kb on - strand, within HUW76_02285at 460.146 kb on + strand, within HUW76_02285at 460.146 kb on + strand, within HUW76_02285at 460.179 kb on + strand, within HUW76_02285at 460.193 kb on - strand, within HUW76_02285at 460.277 kb on + strand, within HUW76_02285at 460.277 kb on + strand, within HUW76_02285at 460.285 kb on - strand, within HUW76_02285at 460.285 kb on - strand, within HUW76_02285at 460.307 kb on + strand, within HUW76_02285at 460.307 kb on + strand, within HUW76_02285at 460.380 kb on - strand, within HUW76_02285at 460.385 kb on - strand, within HUW76_02285at 460.424 kb on - strand, within HUW76_02285at 460.425 kb on + strand, within HUW76_02285at 460.433 kb on + strand, within HUW76_02285at 460.433 kb on + strand, within HUW76_02285at 460.433 kb on + strand, within HUW76_02285at 460.433 kb on + strand, within HUW76_02285at 460.441 kb on - strand, within HUW76_02285at 460.487 kb on - strand, within HUW76_02285at 460.633 kb on + strand, within HUW76_02285at 460.633 kb on + strand, within HUW76_02285at 460.677 kb on - strand, within HUW76_02285at 460.677 kb on - strand, within HUW76_02285at 460.722 kb on - strand, within HUW76_02285at 460.755 kb on - strand, within HUW76_02285at 460.779 kb on + strand, within HUW76_02285at 460.779 kb on + strand, within HUW76_02285at 460.784 kb on + strand, within HUW76_02285at 460.784 kb on + strand, within HUW76_02285at 460.784 kb on + strand, within HUW76_02285at 460.792 kb on - strand, within HUW76_02285at 460.805 kb on - strand, within HUW76_02285at 460.824 kb on + strand, within HUW76_02285at 460.824 kb on + strand, within HUW76_02285at 460.846 kb on + strandat 460.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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458,338 + -0.5
458,338 + -0.1
458,402 + -0.5
458,402 + +0.8
458,412 - +0.0
458,420 - +1.5
458,420 - +1.5
458,421 + +0.4
458,504 + -1.6
458,504 + -0.3
458,593 - +0.0
458,593 - +0.4
458,622 + -0.2
458,622 + -0.8
458,624 + +0.0
458,624 + +0.3
458,624 + +0.9
458,624 + -0.8
458,743 + HUW76_02280 0.17 -1.2
458,743 + HUW76_02280 0.17 +0.2
458,753 + HUW76_02280 0.18 -1.1
458,753 + HUW76_02280 0.18 -0.7
458,753 + HUW76_02280 0.18 -0.1
458,753 + HUW76_02280 0.18 -1.2
458,753 + HUW76_02280 0.18 -0.1
458,753 + HUW76_02280 0.18 -0.1
458,761 - HUW76_02280 0.19 +0.3
458,761 - HUW76_02280 0.19 +0.7
458,808 + HUW76_02280 0.22 +0.2
458,808 + HUW76_02280 0.22 -0.9
458,814 + HUW76_02280 0.23 -1.0
458,847 + HUW76_02280 0.25 -0.3
458,882 + HUW76_02280 0.28 -0.3
458,920 - HUW76_02280 0.30 -0.5
458,943 + HUW76_02280 0.32 -0.1
458,943 + HUW76_02280 0.32 +0.3
458,946 - HUW76_02280 0.32 -0.2
458,951 - HUW76_02280 0.33 +0.6
459,004 + HUW76_02280 0.37 -0.4
459,004 + HUW76_02280 0.37 +0.3
459,035 - HUW76_02280 0.39 +0.8
459,066 - HUW76_02280 0.41 +0.3
459,088 + HUW76_02280 0.43 +0.6
459,088 + HUW76_02280 0.43 -0.5
459,127 + HUW76_02280 0.46 -0.2
459,137 + HUW76_02280 0.47 -0.6
459,140 + HUW76_02280 0.47 -0.6
459,140 - HUW76_02280 0.47 -0.2
459,191 + HUW76_02280 0.51 -0.5
459,191 + HUW76_02280 0.51 +0.4
459,263 + HUW76_02280 0.56 -0.2
459,263 + HUW76_02280 0.56 -1.2
459,270 + HUW76_02280 0.57 -1.6
459,270 + HUW76_02280 0.57 -0.5
459,275 + HUW76_02280 0.57 -0.2
459,293 + HUW76_02280 0.58 -0.8
459,301 - HUW76_02280 0.59 +0.8
459,301 - HUW76_02280 0.59 +0.8
459,375 + HUW76_02280 0.64 -0.8
459,375 + HUW76_02280 0.64 -0.5
459,375 + HUW76_02280 0.64 -0.5
459,423 + HUW76_02280 0.68 +0.2
459,423 + HUW76_02280 0.68 +0.5
459,426 - HUW76_02280 0.68 -0.1
459,595 + HUW76_02280 0.81 -0.3
459,612 + HUW76_02280 0.82 -0.2
459,612 + HUW76_02280 0.82 +0.4
459,612 + HUW76_02280 0.82 -0.0
459,614 + HUW76_02280 0.82 -0.5
459,614 + HUW76_02280 0.82 -0.1
459,614 + HUW76_02280 0.82 -0.1
459,614 + HUW76_02280 0.82 -0.5
459,620 - HUW76_02280 0.83 -0.1
459,620 - HUW76_02280 0.83 +0.3
459,620 - HUW76_02280 0.83 +0.2
459,620 - HUW76_02280 0.83 +0.7
459,622 - HUW76_02280 0.83 -0.1
459,624 + HUW76_02280 0.83 +0.2
459,655 + HUW76_02280 0.85 -0.2
459,655 + HUW76_02280 0.85 +0.1
459,692 + HUW76_02280 0.88 -0.2
459,692 + HUW76_02280 0.88 -0.6
459,697 + HUW76_02280 0.88 -0.8
459,713 - HUW76_02280 0.90 +0.0
459,737 + +0.2
459,737 + -0.8
459,738 + -0.0
459,739 + -0.8
459,739 + -0.4
459,739 + -0.4
459,746 - -0.1
459,746 - +0.2
459,747 - +0.6
459,747 - +0.5
459,785 + -0.8
459,785 + -0.3
459,785 + -0.5
459,785 + -0.2
459,785 + -0.4
459,851 + -0.1
459,918 - +0.2
459,918 - -0.1
459,920 - -1.0
459,927 - +0.4
459,946 + -0.3
459,951 + -0.3
459,966 + -0.5
459,969 - +0.3
460,001 + +0.3
460,080 - -0.0
460,123 - +0.7
460,136 + HUW76_02285 0.10 +0.1
460,143 - HUW76_02285 0.11 +0.3
460,144 - HUW76_02285 0.11 +0.9
460,144 - HUW76_02285 0.11 +0.2
460,146 + HUW76_02285 0.11 -0.4
460,146 + HUW76_02285 0.11 -0.1
460,179 + HUW76_02285 0.15 -0.3
460,193 - HUW76_02285 0.17 +1.2
460,277 + HUW76_02285 0.26 -1.5
460,277 + HUW76_02285 0.26 +1.0
460,285 - HUW76_02285 0.27 -0.4
460,285 - HUW76_02285 0.27 -1.1
460,307 + HUW76_02285 0.30 -0.2
460,307 + HUW76_02285 0.30 -0.3
460,380 - HUW76_02285 0.38 +0.4
460,385 - HUW76_02285 0.39 -0.2
460,424 - HUW76_02285 0.43 +0.8
460,425 + HUW76_02285 0.43 -0.2
460,433 + HUW76_02285 0.44 -0.5
460,433 + HUW76_02285 0.44 -0.2
460,433 + HUW76_02285 0.44 +0.5
460,433 + HUW76_02285 0.44 -0.4
460,441 - HUW76_02285 0.45 +0.2
460,487 - HUW76_02285 0.50 +1.2
460,633 + HUW76_02285 0.67 -0.8
460,633 + HUW76_02285 0.67 +0.2
460,677 - HUW76_02285 0.72 +0.6
460,677 - HUW76_02285 0.72 +0.4
460,722 - HUW76_02285 0.77 -0.0
460,755 - HUW76_02285 0.81 +0.6
460,779 + HUW76_02285 0.84 +0.3
460,779 + HUW76_02285 0.84 +0.5
460,784 + HUW76_02285 0.84 -0.5
460,784 + HUW76_02285 0.84 -0.6
460,784 + HUW76_02285 0.84 -0.7
460,792 - HUW76_02285 0.85 +0.1
460,805 - HUW76_02285 0.87 +0.5
460,824 + HUW76_02285 0.89 -0.0
460,824 + HUW76_02285 0.89 +0.3
460,846 + +0.4
460,847 - +0.2

Or see this region's nucleotide sequence