Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02070

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02065 and HUW76_02070 are separated by 210 nucleotidesHUW76_02070 and HUW76_02075 are separated by 29 nucleotidesHUW76_02075 and HUW76_02080 are separated by 10 nucleotides HUW76_02065: HUW76_02065 - tetratricopeptide repeat protein, at 408,354 to 411,164 _02065 HUW76_02070: HUW76_02070 - hypothetical protein, at 411,375 to 411,752 _02070 HUW76_02075: HUW76_02075 - MotA/TolQ/ExbB proton channel family protein, at 411,782 to 412,393 _02075 HUW76_02080: HUW76_02080 - biopolymer transporter ExbD, at 412,404 to 412,847 _02080 Position (kb) 411 412Strain fitness (log2 ratio) -2 -1 0 1 2at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.390 kb on + strand, within HUW76_02065at 410.423 kb on + strand, within HUW76_02065at 410.441 kb on + strand, within HUW76_02065at 410.530 kb on + strand, within HUW76_02065at 410.615 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.642 kb on + strand, within HUW76_02065at 410.652 kb on + strand, within HUW76_02065at 410.652 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.708 kb on + strand, within HUW76_02065at 410.714 kb on + strand, within HUW76_02065at 410.714 kb on + strand, within HUW76_02065at 410.714 kb on + strand, within HUW76_02065at 410.765 kb on + strand, within HUW76_02065at 410.771 kb on + strand, within HUW76_02065at 410.771 kb on + strand, within HUW76_02065at 410.783 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.836 kb on + strand, within HUW76_02065at 410.841 kb on + strand, within HUW76_02065at 410.841 kb on + strand, within HUW76_02065at 410.877 kb on + strand, within HUW76_02065at 410.888 kb on + strandat 410.888 kb on + strandat 410.888 kb on + strandat 410.888 kb on + strandat 410.888 kb on + strandat 410.888 kb on + strandat 411.035 kb on + strandat 411.106 kb on + strandat 411.292 kb on + strandat 411.292 kb on + strandat 411.318 kb on + strandat 411.412 kb on + strandat 411.432 kb on + strand, within HUW76_02070at 411.432 kb on + strand, within HUW76_02070at 411.433 kb on + strand, within HUW76_02070at 411.493 kb on + strand, within HUW76_02070at 411.493 kb on + strand, within HUW76_02070at 411.496 kb on + strand, within HUW76_02070at 411.496 kb on + strand, within HUW76_02070at 411.503 kb on + strand, within HUW76_02070at 411.596 kb on + strand, within HUW76_02070at 411.596 kb on + strand, within HUW76_02070at 412.150 kb on + strand, within HUW76_02075at 412.159 kb on + strand, within HUW76_02075at 412.159 kb on + strand, within HUW76_02075at 412.240 kb on + strand, within HUW76_02075at 412.253 kb on + strand, within HUW76_02075at 412.253 kb on + strand, within HUW76_02075at 412.256 kb on + strand, within HUW76_02075at 412.258 kb on + strand, within HUW76_02075at 412.258 kb on + strand, within HUW76_02075at 412.258 kb on + strand, within HUW76_02075at 412.263 kb on + strand, within HUW76_02075at 412.263 kb on + strand, within HUW76_02075at 412.286 kb on + strand, within HUW76_02075at 412.286 kb on + strand, within HUW76_02075at 412.380 kb on + strandat 412.380 kb on + strandat 412.380 kb on + strandat 412.380 kb on + strandat 412.388 kb on + strandat 412.388 kb on + strandat 412.388 kb on + strandat 412.388 kb on + strandat 412.432 kb on + strandat 412.440 kb on + strandat 412.440 kb on + strandat 412.513 kb on + strand, within HUW76_02080at 412.513 kb on + strand, within HUW76_02080at 412.532 kb on + strand, within HUW76_02080at 412.638 kb on + strand, within HUW76_02080

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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410,390 + HUW76_02065 0.72 -0.2
410,390 + HUW76_02065 0.72 +1.3
410,390 + HUW76_02065 0.72 -0.6
410,390 + HUW76_02065 0.72 +1.0
410,390 + HUW76_02065 0.72 +2.0
410,390 + HUW76_02065 0.72 +0.8
410,390 + HUW76_02065 0.72 +1.8
410,423 + HUW76_02065 0.74 +0.2
410,441 + HUW76_02065 0.74 -1.7
410,530 + HUW76_02065 0.77 -0.2
410,615 + HUW76_02065 0.80 -0.2
410,642 + HUW76_02065 0.81 +0.5
410,642 + HUW76_02065 0.81 -0.4
410,642 + HUW76_02065 0.81 +0.4
410,642 + HUW76_02065 0.81 +0.6
410,642 + HUW76_02065 0.81 +0.5
410,642 + HUW76_02065 0.81 -0.7
410,642 + HUW76_02065 0.81 +0.0
410,642 + HUW76_02065 0.81 -0.4
410,652 + HUW76_02065 0.82 -1.5
410,652 + HUW76_02065 0.82 -0.6
410,708 + HUW76_02065 0.84 +0.6
410,708 + HUW76_02065 0.84 -0.4
410,708 + HUW76_02065 0.84 +0.5
410,708 + HUW76_02065 0.84 -0.5
410,708 + HUW76_02065 0.84 +1.0
410,708 + HUW76_02065 0.84 -0.8
410,714 + HUW76_02065 0.84 -0.5
410,714 + HUW76_02065 0.84 -0.3
410,714 + HUW76_02065 0.84 +0.3
410,765 + HUW76_02065 0.86 -0.4
410,771 + HUW76_02065 0.86 -0.5
410,771 + HUW76_02065 0.86 +0.0
410,783 + HUW76_02065 0.86 -0.5
410,836 + HUW76_02065 0.88 +0.5
410,836 + HUW76_02065 0.88 -0.4
410,836 + HUW76_02065 0.88 -0.2
410,836 + HUW76_02065 0.88 +0.4
410,836 + HUW76_02065 0.88 +1.1
410,836 + HUW76_02065 0.88 -0.2
410,836 + HUW76_02065 0.88 -0.2
410,841 + HUW76_02065 0.88 +0.1
410,841 + HUW76_02065 0.88 +0.3
410,877 + HUW76_02065 0.90 +0.6
410,888 + -0.3
410,888 + -0.5
410,888 + -0.9
410,888 + -0.0
410,888 + -0.5
410,888 + -0.2
411,035 + -0.0
411,106 + -0.7
411,292 + -1.8
411,292 + -0.7
411,318 + -0.3
411,412 + +0.2
411,432 + HUW76_02070 0.15 +0.1
411,432 + HUW76_02070 0.15 +0.4
411,433 + HUW76_02070 0.15 -0.2
411,493 + HUW76_02070 0.31 +0.1
411,493 + HUW76_02070 0.31 -0.4
411,496 + HUW76_02070 0.32 -1.8
411,496 + HUW76_02070 0.32 -0.0
411,503 + HUW76_02070 0.34 -0.8
411,596 + HUW76_02070 0.58 -0.9
411,596 + HUW76_02070 0.58 +0.6
412,150 + HUW76_02075 0.60 -0.7
412,159 + HUW76_02075 0.62 -0.6
412,159 + HUW76_02075 0.62 -1.4
412,240 + HUW76_02075 0.75 -0.9
412,253 + HUW76_02075 0.77 -0.3
412,253 + HUW76_02075 0.77 -0.4
412,256 + HUW76_02075 0.77 -0.4
412,258 + HUW76_02075 0.78 -0.9
412,258 + HUW76_02075 0.78 -0.5
412,258 + HUW76_02075 0.78 +0.1
412,263 + HUW76_02075 0.79 +0.0
412,263 + HUW76_02075 0.79 -0.2
412,286 + HUW76_02075 0.82 -1.4
412,286 + HUW76_02075 0.82 +0.1
412,380 + -0.3
412,380 + -0.4
412,380 + -0.2
412,380 + -0.9
412,388 + +0.2
412,388 + -0.5
412,388 + -0.4
412,388 + -1.3
412,432 + -0.7
412,440 + -0.7
412,440 + -0.8
412,513 + HUW76_02080 0.25 +0.2
412,513 + HUW76_02080 0.25 +0.4
412,532 + HUW76_02080 0.29 +0.2
412,638 + HUW76_02080 0.53 -0.2

Or see this region's nucleotide sequence