Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02050

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02045 and HUW76_02050 are separated by 5 nucleotidesHUW76_02050 and HUW76_02055 are separated by 11 nucleotides HUW76_02045: HUW76_02045 - response regulator, at 404,101 to 405,972 _02045 HUW76_02050: HUW76_02050 - response regulator transcription factor, at 405,978 to 406,649 _02050 HUW76_02055: HUW76_02055 - PocR ligand-binding domain-containing protein, at 406,661 to 407,458 _02055 Position (kb) 405 406 407Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 404.979 kb on - strand, within HUW76_02045at 405.028 kb on + strand, within HUW76_02045at 405.028 kb on + strand, within HUW76_02045at 405.028 kb on + strand, within HUW76_02045at 405.028 kb on + strand, within HUW76_02045at 405.028 kb on + strand, within HUW76_02045at 405.028 kb on + strand, within HUW76_02045at 405.028 kb on + strand, within HUW76_02045at 405.036 kb on - strand, within HUW76_02045at 405.036 kb on - strand, within HUW76_02045at 405.041 kb on + strand, within HUW76_02045at 405.041 kb on + strand, within HUW76_02045at 405.046 kb on - strand, within HUW76_02045at 405.046 kb on - strand, within HUW76_02045at 405.049 kb on - strand, within HUW76_02045at 405.112 kb on + strand, within HUW76_02045at 405.118 kb on + strand, within HUW76_02045at 405.118 kb on + strand, within HUW76_02045at 405.120 kb on - strand, within HUW76_02045at 405.126 kb on - strand, within HUW76_02045at 405.126 kb on - strand, within HUW76_02045at 405.126 kb on - strand, within HUW76_02045at 405.126 kb on - strand, within HUW76_02045at 405.145 kb on - strand, within HUW76_02045at 405.195 kb on + strand, within HUW76_02045at 405.195 kb on + strand, within HUW76_02045at 405.341 kb on + strand, within HUW76_02045at 405.341 kb on + strand, within HUW76_02045at 405.349 kb on - strand, within HUW76_02045at 405.349 kb on - strand, within HUW76_02045at 405.387 kb on + strand, within HUW76_02045at 405.387 kb on + strand, within HUW76_02045at 405.395 kb on - strand, within HUW76_02045at 405.435 kb on - strand, within HUW76_02045at 405.435 kb on - strand, within HUW76_02045at 405.452 kb on - strand, within HUW76_02045at 405.452 kb on - strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.508 kb on + strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.516 kb on - strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.518 kb on + strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.526 kb on - strand, within HUW76_02045at 405.544 kb on - strand, within HUW76_02045at 405.544 kb on - strand, within HUW76_02045at 405.552 kb on + strand, within HUW76_02045at 405.556 kb on - strand, within HUW76_02045at 405.556 kb on - strand, within HUW76_02045at 405.560 kb on - strand, within HUW76_02045at 405.560 kb on - strand, within HUW76_02045at 405.560 kb on - strand, within HUW76_02045at 405.706 kb on + strand, within HUW76_02045at 405.706 kb on + strand, within HUW76_02045at 405.706 kb on + strand, within HUW76_02045at 405.706 kb on + strand, within HUW76_02045at 405.706 kb on + strand, within HUW76_02045at 405.706 kb on + strand, within HUW76_02045at 405.706 kb on + strand, within HUW76_02045at 405.706 kb on + strand, within HUW76_02045at 405.707 kb on + strand, within HUW76_02045at 405.707 kb on + strand, within HUW76_02045at 405.714 kb on - strand, within HUW76_02045at 405.714 kb on - strand, within HUW76_02045at 405.714 kb on - strand, within HUW76_02045at 405.756 kb on + strand, within HUW76_02045at 405.756 kb on + strand, within HUW76_02045at 405.764 kb on - strand, within HUW76_02045at 405.764 kb on - strand, within HUW76_02045at 405.764 kb on - strand, within HUW76_02045at 405.766 kb on + strand, within HUW76_02045at 405.766 kb on + strand, within HUW76_02045at 405.766 kb on + strand, within HUW76_02045at 405.766 kb on + strand, within HUW76_02045at 405.768 kb on + strand, within HUW76_02045at 405.768 kb on + strand, within HUW76_02045at 405.777 kb on + strand, within HUW76_02045at 405.813 kb on + strandat 405.813 kb on + strandat 405.813 kb on + strandat 405.813 kb on + strandat 405.821 kb on - strandat 405.821 kb on - strandat 405.857 kb on - strandat 405.861 kb on - strandat 405.869 kb on - strandat 405.869 kb on - strandat 405.895 kb on - strandat 405.895 kb on - strandat 405.901 kb on - strandat 405.901 kb on - strandat 405.930 kb on + strandat 405.933 kb on - strandat 405.938 kb on - strandat 405.955 kb on - strandat 405.955 kb on - strandat 406.020 kb on + strandat 406.024 kb on + strandat 406.030 kb on + strandat 406.030 kb on + strandat 406.030 kb on + strandat 406.030 kb on + strandat 406.090 kb on + strand, within HUW76_02050at 406.090 kb on + strand, within HUW76_02050at 406.133 kb on + strand, within HUW76_02050at 406.167 kb on - strand, within HUW76_02050at 406.167 kb on - strand, within HUW76_02050at 406.232 kb on + strand, within HUW76_02050at 406.238 kb on - strand, within HUW76_02050at 406.238 kb on - strand, within HUW76_02050at 406.239 kb on + strand, within HUW76_02050at 406.239 kb on + strand, within HUW76_02050at 406.239 kb on + strand, within HUW76_02050at 406.239 kb on + strand, within HUW76_02050at 406.247 kb on - strand, within HUW76_02050at 406.247 kb on - strand, within HUW76_02050at 406.247 kb on - strand, within HUW76_02050at 406.247 kb on - strand, within HUW76_02050at 406.247 kb on - strand, within HUW76_02050at 406.247 kb on - strand, within HUW76_02050at 406.266 kb on + strand, within HUW76_02050at 406.266 kb on + strand, within HUW76_02050at 406.311 kb on + strand, within HUW76_02050at 406.311 kb on + strand, within HUW76_02050at 406.407 kb on + strand, within HUW76_02050at 406.407 kb on + strand, within HUW76_02050at 406.407 kb on + strand, within HUW76_02050at 406.410 kb on + strand, within HUW76_02050at 406.410 kb on + strand, within HUW76_02050at 406.410 kb on + strand, within HUW76_02050at 406.410 kb on + strand, within HUW76_02050at 406.410 kb on + strand, within HUW76_02050at 406.410 kb on + strand, within HUW76_02050at 406.410 kb on + strand, within HUW76_02050at 406.410 kb on + strand, within HUW76_02050at 406.413 kb on - strand, within HUW76_02050at 406.413 kb on - strand, within HUW76_02050at 406.415 kb on - strand, within HUW76_02050at 406.418 kb on - strand, within HUW76_02050at 406.418 kb on - strand, within HUW76_02050at 406.418 kb on - strand, within HUW76_02050at 406.418 kb on - strand, within HUW76_02050at 406.562 kb on - strand, within HUW76_02050at 406.634 kb on - strandat 406.715 kb on + strandat 406.870 kb on + strand, within HUW76_02055at 406.878 kb on - strand, within HUW76_02055at 406.878 kb on - strand, within HUW76_02055at 406.878 kb on - strand, within HUW76_02055at 406.962 kb on + strand, within HUW76_02055at 406.962 kb on + strand, within HUW76_02055at 406.962 kb on + strand, within HUW76_02055at 406.962 kb on + strand, within HUW76_02055at 406.962 kb on + strand, within HUW76_02055at 406.962 kb on + strand, within HUW76_02055at 406.965 kb on + strand, within HUW76_02055at 406.965 kb on + strand, within HUW76_02055at 406.972 kb on + strand, within HUW76_02055at 406.972 kb on + strand, within HUW76_02055at 406.972 kb on + strand, within HUW76_02055at 406.980 kb on - strand, within HUW76_02055at 406.980 kb on - strand, within HUW76_02055at 406.992 kb on + strand, within HUW76_02055at 406.992 kb on + strand, within HUW76_02055at 407.198 kb on + strand, within HUW76_02055at 407.212 kb on + strand, within HUW76_02055at 407.212 kb on + strand, within HUW76_02055at 407.217 kb on + strand, within HUW76_02055at 407.225 kb on - strand, within HUW76_02055at 407.460 kb on - strandat 407.460 kb on - strandat 407.464 kb on - strandat 407.464 kb on - strandat 407.466 kb on + strandat 407.466 kb on + strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.572 kb on - strandat 407.645 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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404,979 - HUW76_02045 0.47 +1.4
405,028 + HUW76_02045 0.50 -0.3
405,028 + HUW76_02045 0.50 +0.7
405,028 + HUW76_02045 0.50 -0.1
405,028 + HUW76_02045 0.50 +0.1
405,028 + HUW76_02045 0.50 +0.7
405,028 + HUW76_02045 0.50 +0.4
405,028 + HUW76_02045 0.50 -0.5
405,036 - HUW76_02045 0.50 +2.0
405,036 - HUW76_02045 0.50 +1.5
405,041 + HUW76_02045 0.50 +0.1
405,041 + HUW76_02045 0.50 +0.4
405,046 - HUW76_02045 0.50 +0.8
405,046 - HUW76_02045 0.50 -0.2
405,049 - HUW76_02045 0.51 +0.3
405,112 + HUW76_02045 0.54 +0.1
405,118 + HUW76_02045 0.54 +0.3
405,118 + HUW76_02045 0.54 +0.2
405,120 - HUW76_02045 0.54 +1.6
405,126 - HUW76_02045 0.55 +0.2
405,126 - HUW76_02045 0.55 +1.3
405,126 - HUW76_02045 0.55 +0.5
405,126 - HUW76_02045 0.55 +0.8
405,145 - HUW76_02045 0.56 +0.5
405,195 + HUW76_02045 0.58 -0.5
405,195 + HUW76_02045 0.58 +0.3
405,341 + HUW76_02045 0.66 +0.1
405,341 + HUW76_02045 0.66 +0.0
405,349 - HUW76_02045 0.67 +2.0
405,349 - HUW76_02045 0.67 +1.1
405,387 + HUW76_02045 0.69 -1.2
405,387 + HUW76_02045 0.69 +0.1
405,395 - HUW76_02045 0.69 +1.5
405,435 - HUW76_02045 0.71 +2.9
405,435 - HUW76_02045 0.71 -0.8
405,452 - HUW76_02045 0.72 -0.1
405,452 - HUW76_02045 0.72 +1.3
405,508 + HUW76_02045 0.75 +0.9
405,508 + HUW76_02045 0.75 +0.4
405,508 + HUW76_02045 0.75 -0.0
405,508 + HUW76_02045 0.75 +0.4
405,508 + HUW76_02045 0.75 -0.1
405,508 + HUW76_02045 0.75 +0.4
405,508 + HUW76_02045 0.75 +0.1
405,508 + HUW76_02045 0.75 +0.2
405,508 + HUW76_02045 0.75 +0.4
405,508 + HUW76_02045 0.75 +0.7
405,508 + HUW76_02045 0.75 +0.5
405,508 + HUW76_02045 0.75 +0.3
405,508 + HUW76_02045 0.75 +0.2
405,508 + HUW76_02045 0.75 +0.2
405,508 + HUW76_02045 0.75 +0.3
405,508 + HUW76_02045 0.75 +0.1
405,508 + HUW76_02045 0.75 +0.6
405,508 + HUW76_02045 0.75 +0.0
405,508 + HUW76_02045 0.75 +0.2
405,508 + HUW76_02045 0.75 -0.1
405,508 + HUW76_02045 0.75 +0.0
405,508 + HUW76_02045 0.75 +0.0
405,508 + HUW76_02045 0.75 -0.1
405,508 + HUW76_02045 0.75 -0.1
405,508 + HUW76_02045 0.75 +0.4
405,508 + HUW76_02045 0.75 -0.5
405,508 + HUW76_02045 0.75 +0.4
405,516 - HUW76_02045 0.76 +1.8
405,516 - HUW76_02045 0.76 +0.9
405,516 - HUW76_02045 0.76 +0.6
405,516 - HUW76_02045 0.76 +1.4
405,516 - HUW76_02045 0.76 +0.9
405,516 - HUW76_02045 0.76 +2.0
405,516 - HUW76_02045 0.76 +1.4
405,516 - HUW76_02045 0.76 +1.4
405,516 - HUW76_02045 0.76 +1.7
405,516 - HUW76_02045 0.76 +0.7
405,516 - HUW76_02045 0.76 +0.8
405,516 - HUW76_02045 0.76 +1.2
405,516 - HUW76_02045 0.76 +1.6
405,516 - HUW76_02045 0.76 +1.1
405,516 - HUW76_02045 0.76 +4.9
405,516 - HUW76_02045 0.76 +0.4
405,516 - HUW76_02045 0.76 +0.4
405,518 + HUW76_02045 0.76 -0.3
405,518 + HUW76_02045 0.76 +0.9
405,518 + HUW76_02045 0.76 +0.8
405,518 + HUW76_02045 0.76 -0.1
405,518 + HUW76_02045 0.76 -0.2
405,518 + HUW76_02045 0.76 +0.2
405,518 + HUW76_02045 0.76 +1.1
405,518 + HUW76_02045 0.76 -0.3
405,518 + HUW76_02045 0.76 +0.6
405,518 + HUW76_02045 0.76 +0.5
405,518 + HUW76_02045 0.76 +0.2
405,526 - HUW76_02045 0.76 +1.0
405,526 - HUW76_02045 0.76 +0.7
405,526 - HUW76_02045 0.76 +0.3
405,526 - HUW76_02045 0.76 +0.8
405,526 - HUW76_02045 0.76 +0.3
405,526 - HUW76_02045 0.76 +0.4
405,526 - HUW76_02045 0.76 +0.5
405,526 - HUW76_02045 0.76 +0.2
405,526 - HUW76_02045 0.76 +0.6
405,526 - HUW76_02045 0.76 +0.0
405,526 - HUW76_02045 0.76 +0.6
405,526 - HUW76_02045 0.76 +0.5
405,544 - HUW76_02045 0.77 +1.3
405,544 - HUW76_02045 0.77 +0.4
405,552 + HUW76_02045 0.78 +0.6
405,556 - HUW76_02045 0.78 +0.8
405,556 - HUW76_02045 0.78 +0.5
405,560 - HUW76_02045 0.78 -0.3
405,560 - HUW76_02045 0.78 +0.9
405,560 - HUW76_02045 0.78 +1.8
405,706 + HUW76_02045 0.86 +0.2
405,706 + HUW76_02045 0.86 +1.2
405,706 + HUW76_02045 0.86 +0.3
405,706 + HUW76_02045 0.86 +0.5
405,706 + HUW76_02045 0.86 +0.3
405,706 + HUW76_02045 0.86 +1.8
405,706 + HUW76_02045 0.86 +0.5
405,706 + HUW76_02045 0.86 +0.0
405,707 + HUW76_02045 0.86 +0.6
405,707 + HUW76_02045 0.86 +0.0
405,714 - HUW76_02045 0.86 +2.0
405,714 - HUW76_02045 0.86 +1.6
405,714 - HUW76_02045 0.86 +3.2
405,756 + HUW76_02045 0.88 +0.4
405,756 + HUW76_02045 0.88 +0.0
405,764 - HUW76_02045 0.89 +2.1
405,764 - HUW76_02045 0.89 -2.3
405,764 - HUW76_02045 0.89 +0.9
405,766 + HUW76_02045 0.89 +0.3
405,766 + HUW76_02045 0.89 -0.1
405,766 + HUW76_02045 0.89 +0.7
405,766 + HUW76_02045 0.89 -0.2
405,768 + HUW76_02045 0.89 +0.4
405,768 + HUW76_02045 0.89 -1.0
405,777 + HUW76_02045 0.90 +0.5
405,813 + +0.2
405,813 + -0.3
405,813 + +0.3
405,813 + +0.1
405,821 - +2.0
405,821 - +1.2
405,857 - +1.8
405,861 - +1.7
405,869 - +1.5
405,869 - +0.1
405,895 - +2.0
405,895 - -0.4
405,901 - +1.4
405,901 - +1.0
405,930 + +2.8
405,933 - +1.2
405,938 - +0.7
405,955 - +1.6
405,955 - +0.7
406,020 + +0.6
406,024 + +0.1
406,030 + -0.6
406,030 + +0.3
406,030 + -0.1
406,030 + +0.2
406,090 + HUW76_02050 0.17 +0.3
406,090 + HUW76_02050 0.17 +0.2
406,133 + HUW76_02050 0.23 +0.3
406,167 - HUW76_02050 0.28 +1.0
406,167 - HUW76_02050 0.28 +1.0
406,232 + HUW76_02050 0.38 +0.2
406,238 - HUW76_02050 0.39 +3.5
406,238 - HUW76_02050 0.39 +3.2
406,239 + HUW76_02050 0.39 -0.0
406,239 + HUW76_02050 0.39 +0.9
406,239 + HUW76_02050 0.39 +0.1
406,239 + HUW76_02050 0.39 -0.1
406,247 - HUW76_02050 0.40 +2.6
406,247 - HUW76_02050 0.40 +3.9
406,247 - HUW76_02050 0.40 +0.8
406,247 - HUW76_02050 0.40 +1.0
406,247 - HUW76_02050 0.40 +0.9
406,247 - HUW76_02050 0.40 +1.7
406,266 + HUW76_02050 0.43 -0.5
406,266 + HUW76_02050 0.43 +0.1
406,311 + HUW76_02050 0.50 +1.5
406,311 + HUW76_02050 0.50 +2.3
406,407 + HUW76_02050 0.64 +0.3
406,407 + HUW76_02050 0.64 -0.1
406,407 + HUW76_02050 0.64 +0.2
406,410 + HUW76_02050 0.64 -0.0
406,410 + HUW76_02050 0.64 +0.1
406,410 + HUW76_02050 0.64 +0.3
406,410 + HUW76_02050 0.64 +0.4
406,410 + HUW76_02050 0.64 +0.9
406,410 + HUW76_02050 0.64 +0.3
406,410 + HUW76_02050 0.64 +0.1
406,410 + HUW76_02050 0.64 +0.4
406,413 - HUW76_02050 0.65 +1.7
406,413 - HUW76_02050 0.65 +1.9
406,415 - HUW76_02050 0.65 +1.9
406,418 - HUW76_02050 0.65 +0.6
406,418 - HUW76_02050 0.65 +2.0
406,418 - HUW76_02050 0.65 +0.5
406,418 - HUW76_02050 0.65 +1.1
406,562 - HUW76_02050 0.87 +0.9
406,634 - +1.3
406,715 + -0.2
406,870 + HUW76_02055 0.26 +0.6
406,878 - HUW76_02055 0.27 +1.2
406,878 - HUW76_02055 0.27 +1.2
406,878 - HUW76_02055 0.27 +1.0
406,962 + HUW76_02055 0.38 +0.5
406,962 + HUW76_02055 0.38 -0.1
406,962 + HUW76_02055 0.38 -0.2
406,962 + HUW76_02055 0.38 -0.2
406,962 + HUW76_02055 0.38 +0.4
406,962 + HUW76_02055 0.38 +0.3
406,965 + HUW76_02055 0.38 -0.1
406,965 + HUW76_02055 0.38 -0.3
406,972 + HUW76_02055 0.39 -0.2
406,972 + HUW76_02055 0.39 +0.2
406,972 + HUW76_02055 0.39 -0.3
406,980 - HUW76_02055 0.40 +5.2
406,980 - HUW76_02055 0.40 +2.3
406,992 + HUW76_02055 0.41 -0.2
406,992 + HUW76_02055 0.41 -0.2
407,198 + HUW76_02055 0.67 -0.1
407,212 + HUW76_02055 0.69 +0.4
407,212 + HUW76_02055 0.69 -0.3
407,217 + HUW76_02055 0.70 +0.2
407,225 - HUW76_02055 0.71 +2.0
407,460 - +0.4
407,460 - +0.4
407,464 - +2.4
407,464 - +1.3
407,466 + -0.2
407,466 + +0.3
407,572 - +1.4
407,572 - -0.9
407,572 - +1.0
407,572 - +0.4
407,572 - +0.1
407,572 - +1.6
407,572 - +0.4
407,645 + -0.3

Or see this region's nucleotide sequence