Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01980

Experiment: Time0_primer_test

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHUW76_01975 and HUW76_01980 are separated by 15 nucleotidesHUW76_01980 and HUW76_01985 are separated by 9 nucleotidesHUW76_01985 and HUW76_01990 are separated by 15 nucleotides HUW76_01975: HUW76_01975 - aldehyde dehydrogenase EutE, at 391,922 to 393,319 _01975 HUW76_01980: HUW76_01980 - heme-binding protein, at 393,335 to 394,276 _01980 HUW76_01985: HUW76_01985 - EutN/CcmL family microcompartment protein, at 394,286 to 394,555 _01985 HUW76_01990: HUW76_01990 - flavoprotein, at 394,571 to 395,281 _01990 Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2at 392.423 kb on + strand, within HUW76_01975at 392.423 kb on + strand, within HUW76_01975at 392.502 kb on + strand, within HUW76_01975at 392.502 kb on + strand, within HUW76_01975at 392.502 kb on + strand, within HUW76_01975at 392.502 kb on + strand, within HUW76_01975at 392.502 kb on + strand, within HUW76_01975at 392.510 kb on - strand, within HUW76_01975at 392.510 kb on - strand, within HUW76_01975at 392.510 kb on - strand, within HUW76_01975at 392.510 kb on - strand, within HUW76_01975at 392.510 kb on - strand, within HUW76_01975at 392.510 kb on - strand, within HUW76_01975at 392.515 kb on - strand, within HUW76_01975at 392.538 kb on + strand, within HUW76_01975at 392.538 kb on + strand, within HUW76_01975at 392.546 kb on - strand, within HUW76_01975at 392.546 kb on - strand, within HUW76_01975at 392.546 kb on - strand, within HUW76_01975at 392.546 kb on - strand, within HUW76_01975at 392.546 kb on - strand, within HUW76_01975at 392.546 kb on - strand, within HUW76_01975at 392.546 kb on - strand, within HUW76_01975at 392.546 kb on - strand, within HUW76_01975at 392.546 kb on - strand, within HUW76_01975at 392.546 kb on - strand, within HUW76_01975at 392.587 kb on - strand, within HUW76_01975at 392.625 kb on + strand, within HUW76_01975at 392.632 kb on + strand, within HUW76_01975at 392.638 kb on - strand, within HUW76_01975at 392.638 kb on - strand, within HUW76_01975at 392.650 kb on + strand, within HUW76_01975at 392.658 kb on - strand, within HUW76_01975at 392.682 kb on + strand, within HUW76_01975at 392.690 kb on - strand, within HUW76_01975at 392.728 kb on + strand, within HUW76_01975at 392.728 kb on - strand, within HUW76_01975at 392.757 kb on + strand, within HUW76_01975at 392.804 kb on - strand, within HUW76_01975at 392.838 kb on - strand, within HUW76_01975at 392.838 kb on - strand, within HUW76_01975at 392.871 kb on + strand, within HUW76_01975at 392.871 kb on + strand, within HUW76_01975at 392.899 kb on - strand, within HUW76_01975at 392.924 kb on - strand, within HUW76_01975at 392.924 kb on - strand, within HUW76_01975at 392.934 kb on - strand, within HUW76_01975at 392.934 kb on - strand, within HUW76_01975at 392.936 kb on - strand, within HUW76_01975at 392.936 kb on - strand, within HUW76_01975at 392.958 kb on - strand, within HUW76_01975at 392.992 kb on + strand, within HUW76_01975at 393.001 kb on - strand, within HUW76_01975at 393.053 kb on + strand, within HUW76_01975at 393.061 kb on - strand, within HUW76_01975at 393.061 kb on - strand, within HUW76_01975at 393.061 kb on - strand, within HUW76_01975at 393.061 kb on - strand, within HUW76_01975at 393.061 kb on - strand, within HUW76_01975at 393.061 kb on - strand, within HUW76_01975at 393.061 kb on - strand, within HUW76_01975at 393.061 kb on - strand, within HUW76_01975at 393.061 kb on - strand, within HUW76_01975at 393.061 kb on - strand, within HUW76_01975at 393.109 kb on + strand, within HUW76_01975at 393.109 kb on + strand, within HUW76_01975at 393.197 kb on - strandat 393.197 kb on - strandat 393.202 kb on + strandat 393.202 kb on + strandat 393.205 kb on - strandat 393.210 kb on - strandat 393.210 kb on - strandat 393.210 kb on - strandat 393.210 kb on - strandat 393.255 kb on - strandat 393.360 kb on - strandat 393.360 kb on - strandat 393.360 kb on - strandat 393.362 kb on + strandat 393.374 kb on + strandat 393.401 kb on + strandat 393.401 kb on + strandat 393.404 kb on + strandat 393.406 kb on + strandat 393.414 kb on - strandat 393.489 kb on + strand, within HUW76_01980at 393.489 kb on + strand, within HUW76_01980at 393.497 kb on - strand, within HUW76_01980at 393.497 kb on - strand, within HUW76_01980at 393.497 kb on - strand, within HUW76_01980at 393.497 kb on - strand, within HUW76_01980at 393.497 kb on - strand, within HUW76_01980at 393.504 kb on - strand, within HUW76_01980at 393.504 kb on - strand, within HUW76_01980at 393.504 kb on - strand, within HUW76_01980at 393.504 kb on - strand, within HUW76_01980at 393.514 kb on - strand, within HUW76_01980at 393.529 kb on - strand, within HUW76_01980at 393.529 kb on - strand, within HUW76_01980at 393.558 kb on + strand, within HUW76_01980at 393.566 kb on - strand, within HUW76_01980at 393.578 kb on + strand, within HUW76_01980at 393.580 kb on + strand, within HUW76_01980at 393.580 kb on + strand, within HUW76_01980at 393.588 kb on - strand, within HUW76_01980at 393.588 kb on - strand, within HUW76_01980at 393.588 kb on - strand, within HUW76_01980at 393.596 kb on - strand, within HUW76_01980at 393.596 kb on - strand, within HUW76_01980at 393.604 kb on + strand, within HUW76_01980at 393.608 kb on - strand, within HUW76_01980at 393.647 kb on - strand, within HUW76_01980at 393.649 kb on + strand, within HUW76_01980at 393.932 kb on - strand, within HUW76_01980at 393.932 kb on - strand, within HUW76_01980at 393.935 kb on - strand, within HUW76_01980at 393.935 kb on - strand, within HUW76_01980at 393.942 kb on - strand, within HUW76_01980at 393.942 kb on - strand, within HUW76_01980at 394.292 kb on - strandat 394.292 kb on - strandat 394.292 kb on - strandat 394.294 kb on + strandat 394.302 kb on - strandat 394.302 kb on - strandat 394.302 kb on - strandat 394.302 kb on - strandat 394.302 kb on - strandat 394.305 kb on - strandat 394.310 kb on - strandat 394.338 kb on - strand, within HUW76_01985at 394.338 kb on - strand, within HUW76_01985at 394.380 kb on - strand, within HUW76_01985at 394.380 kb on - strand, within HUW76_01985at 394.394 kb on - strand, within HUW76_01985at 394.394 kb on - strand, within HUW76_01985at 394.400 kb on + strand, within HUW76_01985at 394.400 kb on + strand, within HUW76_01985at 394.407 kb on - strand, within HUW76_01985at 394.408 kb on - strand, within HUW76_01985at 394.428 kb on - strand, within HUW76_01985at 394.561 kb on + strandat 394.561 kb on + strandat 394.563 kb on - strandat 394.633 kb on - strandat 394.633 kb on - strandat 394.671 kb on + strand, within HUW76_01990at 394.681 kb on + strand, within HUW76_01990at 394.689 kb on - strand, within HUW76_01990at 394.689 kb on - strand, within HUW76_01990at 394.742 kb on + strand, within HUW76_01990at 394.918 kb on + strand, within HUW76_01990at 395.132 kb on + strand, within HUW76_01990at 395.154 kb on - strand, within HUW76_01990at 395.204 kb on - strand, within HUW76_01990at 395.204 kb on - strand, within HUW76_01990at 395.204 kb on - strand, within HUW76_01990at 395.243 kb on + strandat 395.251 kb on - strandat 395.251 kb on - strandat 395.251 kb on - strandat 395.251 kb on - strandat 395.251 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
remove
392,423 + HUW76_01975 0.36 +0.3
392,423 + HUW76_01975 0.36 +0.4
392,502 + HUW76_01975 0.41 +0.9
392,502 + HUW76_01975 0.41 +0.7
392,502 + HUW76_01975 0.41 -0.5
392,502 + HUW76_01975 0.41 -0.1
392,502 + HUW76_01975 0.41 -0.5
392,510 - HUW76_01975 0.42 -0.1
392,510 - HUW76_01975 0.42 +0.3
392,510 - HUW76_01975 0.42 +0.2
392,510 - HUW76_01975 0.42 -0.3
392,510 - HUW76_01975 0.42 +0.1
392,510 - HUW76_01975 0.42 -0.3
392,515 - HUW76_01975 0.42 +0.7
392,538 + HUW76_01975 0.44 +0.4
392,538 + HUW76_01975 0.44 +0.1
392,546 - HUW76_01975 0.45 -0.2
392,546 - HUW76_01975 0.45 -0.3
392,546 - HUW76_01975 0.45 -0.5
392,546 - HUW76_01975 0.45 -0.5
392,546 - HUW76_01975 0.45 -0.1
392,546 - HUW76_01975 0.45 -0.4
392,546 - HUW76_01975 0.45 -0.2
392,546 - HUW76_01975 0.45 -0.3
392,546 - HUW76_01975 0.45 +0.0
392,546 - HUW76_01975 0.45 -0.1
392,587 - HUW76_01975 0.48 -0.1
392,625 + HUW76_01975 0.50 +1.1
392,632 + HUW76_01975 0.51 +0.1
392,638 - HUW76_01975 0.51 +0.4
392,638 - HUW76_01975 0.51 +0.0
392,650 + HUW76_01975 0.52 +1.2
392,658 - HUW76_01975 0.53 -0.6
392,682 + HUW76_01975 0.54 +0.8
392,690 - HUW76_01975 0.55 -0.6
392,728 + HUW76_01975 0.58 +1.3
392,728 - HUW76_01975 0.58 -0.8
392,757 + HUW76_01975 0.60 +0.3
392,804 - HUW76_01975 0.63 -0.6
392,838 - HUW76_01975 0.66 -0.2
392,838 - HUW76_01975 0.66 -0.2
392,871 + HUW76_01975 0.68 +1.6
392,871 + HUW76_01975 0.68 +0.5
392,899 - HUW76_01975 0.70 -0.0
392,924 - HUW76_01975 0.72 +0.0
392,924 - HUW76_01975 0.72 -0.4
392,934 - HUW76_01975 0.72 -0.1
392,934 - HUW76_01975 0.72 +0.1
392,936 - HUW76_01975 0.73 -0.3
392,936 - HUW76_01975 0.73 -0.1
392,958 - HUW76_01975 0.74 -0.5
392,992 + HUW76_01975 0.77 -2.1
393,001 - HUW76_01975 0.77 -0.2
393,053 + HUW76_01975 0.81 +1.5
393,061 - HUW76_01975 0.81 -0.0
393,061 - HUW76_01975 0.81 -0.5
393,061 - HUW76_01975 0.81 -0.9
393,061 - HUW76_01975 0.81 -0.2
393,061 - HUW76_01975 0.81 -0.1
393,061 - HUW76_01975 0.81 +0.3
393,061 - HUW76_01975 0.81 -0.7
393,061 - HUW76_01975 0.81 -0.8
393,061 - HUW76_01975 0.81 -1.2
393,061 - HUW76_01975 0.81 -0.1
393,109 + HUW76_01975 0.85 +2.2
393,109 + HUW76_01975 0.85 +1.0
393,197 - -0.5
393,197 - -0.1
393,202 + +0.9
393,202 + +1.3
393,205 - -1.0
393,210 - +0.0
393,210 - -0.2
393,210 - +0.0
393,210 - -0.3
393,255 - +0.1
393,360 - +0.9
393,360 - -0.2
393,360 - +0.6
393,362 + +1.1
393,374 + +0.5
393,401 + +0.8
393,401 + +1.0
393,404 + +1.0
393,406 + +0.9
393,414 - -0.3
393,489 + HUW76_01980 0.16 +1.3
393,489 + HUW76_01980 0.16 +0.9
393,497 - HUW76_01980 0.17 -0.7
393,497 - HUW76_01980 0.17 +0.7
393,497 - HUW76_01980 0.17 -0.7
393,497 - HUW76_01980 0.17 -0.5
393,497 - HUW76_01980 0.17 +0.1
393,504 - HUW76_01980 0.18 -0.5
393,504 - HUW76_01980 0.18 +0.1
393,504 - HUW76_01980 0.18 +0.0
393,504 - HUW76_01980 0.18 +0.3
393,514 - HUW76_01980 0.19 -0.5
393,529 - HUW76_01980 0.21 +0.0
393,529 - HUW76_01980 0.21 -0.8
393,558 + HUW76_01980 0.24 +1.0
393,566 - HUW76_01980 0.25 -0.2
393,578 + HUW76_01980 0.26 -0.3
393,580 + HUW76_01980 0.26 +0.5
393,580 + HUW76_01980 0.26 +0.5
393,588 - HUW76_01980 0.27 -0.8
393,588 - HUW76_01980 0.27 -0.9
393,588 - HUW76_01980 0.27 -0.6
393,596 - HUW76_01980 0.28 -0.9
393,596 - HUW76_01980 0.28 -0.3
393,604 + HUW76_01980 0.29 +1.9
393,608 - HUW76_01980 0.29 -0.9
393,647 - HUW76_01980 0.33 -1.1
393,649 + HUW76_01980 0.33 -0.4
393,932 - HUW76_01980 0.63 +0.0
393,932 - HUW76_01980 0.63 -0.2
393,935 - HUW76_01980 0.64 -0.7
393,935 - HUW76_01980 0.64 -0.7
393,942 - HUW76_01980 0.64 +0.2
393,942 - HUW76_01980 0.64 -0.7
394,292 - -0.2
394,292 - +0.2
394,292 - -0.4
394,294 + +0.9
394,302 - -0.0
394,302 - -0.1
394,302 - -0.5
394,302 - -0.2
394,302 - -0.3
394,305 - -0.6
394,310 - -0.6
394,338 - HUW76_01985 0.19 +0.3
394,338 - HUW76_01985 0.19 -1.0
394,380 - HUW76_01985 0.35 -0.1
394,380 - HUW76_01985 0.35 -0.4
394,394 - HUW76_01985 0.40 -0.3
394,394 - HUW76_01985 0.40 -0.3
394,400 + HUW76_01985 0.42 +1.0
394,400 + HUW76_01985 0.42 +1.0
394,407 - HUW76_01985 0.45 -0.6
394,408 - HUW76_01985 0.45 -0.8
394,428 - HUW76_01985 0.53 -0.0
394,561 + +0.9
394,561 + +0.0
394,563 - -0.8
394,633 - +0.2
394,633 - -0.9
394,671 + HUW76_01990 0.14 +0.6
394,681 + HUW76_01990 0.15 +0.7
394,689 - HUW76_01990 0.17 -0.4
394,689 - HUW76_01990 0.17 -0.5
394,742 + HUW76_01990 0.24 +0.5
394,918 + HUW76_01990 0.49 +0.5
395,132 + HUW76_01990 0.79 +0.5
395,154 - HUW76_01990 0.82 -1.0
395,204 - HUW76_01990 0.89 -0.8
395,204 - HUW76_01990 0.89 -0.3
395,204 - HUW76_01990 0.89 +1.2
395,243 + +0.3
395,251 - -0.5
395,251 - -1.0
395,251 - +0.1
395,251 - -0.1
395,251 - -0.9

Or see this region's nucleotide sequence