Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01850

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01845 and HUW76_01850 are separated by 122 nucleotidesHUW76_01850 and HUW76_01855 are separated by 17 nucleotidesHUW76_01855 and HUW76_01860 are separated by 34 nucleotides HUW76_01845: HUW76_01845 - short-chain fatty acid transporter, at 365,038 to 366,414 _01845 HUW76_01850: HUW76_01850 - CoA transferase subunit A, at 366,537 to 367,190 _01850 HUW76_01855: HUW76_01855 - CoA transferase subunit B, at 367,208 to 367,861 _01855 HUW76_01860: HUW76_01860 - methylaspartate mutase subunit E, at 367,896 to 369,353 _01860 Position (kb) 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2at 365.547 kb on + strand, within HUW76_01845at 365.651 kb on + strand, within HUW76_01845at 365.651 kb on + strand, within HUW76_01845at 365.776 kb on - strand, within HUW76_01845at 365.851 kb on + strand, within HUW76_01845at 365.851 kb on + strand, within HUW76_01845at 366.019 kb on + strand, within HUW76_01845at 366.019 kb on + strand, within HUW76_01845at 366.040 kb on + strand, within HUW76_01845at 366.041 kb on + strand, within HUW76_01845at 366.137 kb on + strand, within HUW76_01845at 366.195 kb on - strand, within HUW76_01845at 366.195 kb on - strand, within HUW76_01845at 366.222 kb on - strand, within HUW76_01845at 366.310 kb on + strandat 366.332 kb on - strandat 366.332 kb on - strandat 366.339 kb on + strandat 366.339 kb on + strandat 366.348 kb on + strandat 366.369 kb on + strandat 366.369 kb on + strandat 366.378 kb on - strandat 366.495 kb on - strandat 366.521 kb on + strandat 366.586 kb on - strandat 366.586 kb on - strandat 366.621 kb on - strand, within HUW76_01850at 366.651 kb on - strand, within HUW76_01850at 366.671 kb on + strand, within HUW76_01850at 366.676 kb on + strand, within HUW76_01850at 366.854 kb on + strand, within HUW76_01850at 366.854 kb on + strand, within HUW76_01850at 366.868 kb on + strand, within HUW76_01850at 366.868 kb on + strand, within HUW76_01850at 367.045 kb on + strand, within HUW76_01850at 367.130 kb on - strandat 367.140 kb on - strandat 367.169 kb on + strandat 367.169 kb on + strandat 367.196 kb on + strandat 367.365 kb on + strand, within HUW76_01855at 367.365 kb on + strand, within HUW76_01855at 367.371 kb on + strand, within HUW76_01855at 367.371 kb on + strand, within HUW76_01855at 367.372 kb on + strand, within HUW76_01855at 367.372 kb on + strand, within HUW76_01855at 367.372 kb on + strand, within HUW76_01855at 367.432 kb on + strand, within HUW76_01855at 367.489 kb on + strand, within HUW76_01855at 367.489 kb on + strand, within HUW76_01855at 367.489 kb on + strand, within HUW76_01855at 367.499 kb on + strand, within HUW76_01855at 367.517 kb on + strand, within HUW76_01855at 367.517 kb on + strand, within HUW76_01855at 367.594 kb on + strand, within HUW76_01855at 367.594 kb on + strand, within HUW76_01855at 367.594 kb on + strand, within HUW76_01855at 367.594 kb on + strand, within HUW76_01855at 367.594 kb on + strand, within HUW76_01855at 367.612 kb on + strand, within HUW76_01855at 367.628 kb on + strand, within HUW76_01855at 367.637 kb on - strand, within HUW76_01855at 367.750 kb on + strand, within HUW76_01855at 368.052 kb on + strand, within HUW76_01860at 368.052 kb on + strand, within HUW76_01860at 368.065 kb on - strand, within HUW76_01860at 368.188 kb on + strand, within HUW76_01860at 368.188 kb on + strand, within HUW76_01860

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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365,547 + HUW76_01845 0.37 -0.3
365,651 + HUW76_01845 0.45 -1.9
365,651 + HUW76_01845 0.45 -0.5
365,776 - HUW76_01845 0.54 +0.6
365,851 + HUW76_01845 0.59 -0.2
365,851 + HUW76_01845 0.59 -0.2
366,019 + HUW76_01845 0.71 +0.0
366,019 + HUW76_01845 0.71 +0.4
366,040 + HUW76_01845 0.73 -0.8
366,041 + HUW76_01845 0.73 +0.1
366,137 + HUW76_01845 0.80 -0.5
366,195 - HUW76_01845 0.84 -0.4
366,195 - HUW76_01845 0.84 -2.0
366,222 - HUW76_01845 0.86 -1.5
366,310 + -0.7
366,332 - -1.6
366,332 - +1.6
366,339 + -0.6
366,339 + -0.9
366,348 + -0.7
366,369 + -0.2
366,369 + -0.8
366,378 - -0.3
366,495 - -0.9
366,521 + +0.0
366,586 - -0.2
366,586 - -0.2
366,621 - HUW76_01850 0.13 +1.0
366,651 - HUW76_01850 0.17 +1.0
366,671 + HUW76_01850 0.20 -0.6
366,676 + HUW76_01850 0.21 -0.3
366,854 + HUW76_01850 0.48 -0.9
366,854 + HUW76_01850 0.48 -0.8
366,868 + HUW76_01850 0.51 -0.8
366,868 + HUW76_01850 0.51 -0.7
367,045 + HUW76_01850 0.78 -1.0
367,130 - -1.8
367,140 - -1.0
367,169 + -0.7
367,169 + +0.0
367,196 + -0.3
367,365 + HUW76_01855 0.24 +0.2
367,365 + HUW76_01855 0.24 -1.7
367,371 + HUW76_01855 0.25 -1.2
367,371 + HUW76_01855 0.25 -1.3
367,372 + HUW76_01855 0.25 -2.0
367,372 + HUW76_01855 0.25 -1.8
367,372 + HUW76_01855 0.25 +0.0
367,432 + HUW76_01855 0.34 -1.3
367,489 + HUW76_01855 0.43 -2.1
367,489 + HUW76_01855 0.43 +0.6
367,489 + HUW76_01855 0.43 -1.4
367,499 + HUW76_01855 0.44 -2.0
367,517 + HUW76_01855 0.47 -0.7
367,517 + HUW76_01855 0.47 -0.1
367,594 + HUW76_01855 0.59 +2.0
367,594 + HUW76_01855 0.59 -0.4
367,594 + HUW76_01855 0.59 -2.1
367,594 + HUW76_01855 0.59 -0.7
367,594 + HUW76_01855 0.59 -1.3
367,612 + HUW76_01855 0.62 -2.1
367,628 + HUW76_01855 0.64 +1.0
367,637 - HUW76_01855 0.66 +1.0
367,750 + HUW76_01855 0.83 -1.6
368,052 + HUW76_01860 0.11 +0.2
368,052 + HUW76_01860 0.11 -0.1
368,065 - HUW76_01860 0.12 -0.6
368,188 + HUW76_01860 0.20 +0.5
368,188 + HUW76_01860 0.20 -0.5

Or see this region's nucleotide sequence