Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_01755 and HUW76_01760 are separated by 144 nucleotides HUW76_01760 and HUW76_01765 are separated by 61 nucleotides HUW76_01765 and HUW76_01770 are separated by 3 nucleotides HUW76_01770 and HUW76_01775 are separated by 12 nucleotides HUW76_01775 and HUW76_01780 are separated by 144 nucleotides
HUW76_01755: HUW76_01755 - NCS2 family permease, at 346,662 to 347,990
_01755
HUW76_01760: HUW76_01760 - DJ-1/PfpI family protein, at 348,135 to 348,737
_01760
HUW76_01765: HUW76_01765 - peptidylprolyl isomerase, at 348,799 to 349,293
_01765
HUW76_01770: HUW76_01770 - ribose 5-phosphate isomerase B, at 349,297 to 349,746
_01770
HUW76_01775: HUW76_01775 - histidine triad nucleotide-binding protein, at 349,759 to 350,097
_01775
HUW76_01780: HUW76_01780 - hypothetical protein, at 350,242 to 350,967
_01780
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 347.865 kb on + strand at 347.865 kb on + strand at 347.865 kb on + strand at 347.865 kb on + strand at 347.888 kb on - strand at 347.948 kb on - strand at 347.950 kb on - strand at 347.987 kb on - strand at 348.007 kb on + strand at 348.007 kb on + strand at 348.015 kb on - strand at 348.015 kb on - strand at 348.052 kb on + strand at 348.166 kb on + strand at 348.166 kb on + strand at 348.166 kb on + strand at 348.166 kb on + strand at 348.174 kb on - strand at 348.174 kb on - strand at 348.174 kb on - strand at 348.212 kb on + strand, within HUW76_01760 at 348.265 kb on + strand, within HUW76_01760 at 348.265 kb on + strand, within HUW76_01760 at 348.277 kb on + strand, within HUW76_01760 at 348.277 kb on + strand, within HUW76_01760 at 348.312 kb on + strand, within HUW76_01760 at 348.327 kb on + strand, within HUW76_01760 at 348.327 kb on + strand, within HUW76_01760 at 348.335 kb on - strand, within HUW76_01760 at 348.642 kb on - strand, within HUW76_01760 at 348.642 kb on - strand, within HUW76_01760 at 348.644 kb on + strand, within HUW76_01760 at 348.652 kb on - strand, within HUW76_01760 at 348.652 kb on - strand, within HUW76_01760 at 348.652 kb on - strand, within HUW76_01760 at 348.765 kb on + strand at 348.833 kb on + strand at 348.904 kb on + strand, within HUW76_01765 at 348.999 kb on + strand, within HUW76_01765 at 349.000 kb on + strand, within HUW76_01765 at 349.000 kb on + strand, within HUW76_01765 at 349.021 kb on + strand, within HUW76_01765 at 349.099 kb on + strand, within HUW76_01765 at 349.131 kb on + strand, within HUW76_01765 at 349.147 kb on + strand, within HUW76_01765 at 349.152 kb on + strand, within HUW76_01765 at 349.157 kb on + strand, within HUW76_01765 at 349.216 kb on + strand, within HUW76_01765 at 349.234 kb on + strand, within HUW76_01765 at 349.253 kb on + strand at 349.750 kb on + strand at 349.827 kb on + strand, within HUW76_01775 at 349.834 kb on - strand, within HUW76_01775 at 349.985 kb on - strand, within HUW76_01775 at 350.092 kb on - strand at 350.175 kb on + strand at 350.175 kb on + strand at 350.176 kb on - strand at 350.177 kb on + strand at 350.185 kb on - strand at 350.185 kb on - strand at 350.195 kb on - strand at 350.195 kb on - strand at 350.225 kb on + strand at 350.245 kb on - strand at 350.247 kb on + strand at 350.247 kb on + strand at 350.249 kb on + strand at 350.249 kb on + strand at 350.255 kb on - strand at 350.255 kb on - strand at 350.257 kb on - strand at 350.257 kb on - strand at 350.257 kb on - strand at 350.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 347,865 + -0.8 347,865 + +0.1 347,865 + +0.6 347,865 + -0.8 347,888 - -0.0 347,948 - +0.1 347,950 - +0.8 347,987 - +0.1 348,007 + -0.3 348,007 + -0.6 348,015 - +0.3 348,015 - +1.1 348,052 + -0.0 348,166 + -0.0 348,166 + +0.3 348,166 + -0.5 348,166 + -0.4 348,174 - +0.6 348,174 - +0.9 348,174 - +0.2 348,212 + HUW76_01760 0.13 -0.5 348,265 + HUW76_01760 0.22 -0.5 348,265 + HUW76_01760 0.22 -0.2 348,277 + HUW76_01760 0.24 -0.9 348,277 + HUW76_01760 0.24 -0.9 348,312 + HUW76_01760 0.29 -1.0 348,327 + HUW76_01760 0.32 -0.3 348,327 + HUW76_01760 0.32 +0.4 348,335 - HUW76_01760 0.33 +0.9 348,642 - HUW76_01760 0.84 -0.7 348,642 - HUW76_01760 0.84 +0.4 348,644 + HUW76_01760 0.84 +0.2 348,652 - HUW76_01760 0.86 +0.5 348,652 - HUW76_01760 0.86 -0.5 348,652 - HUW76_01760 0.86 -0.6 348,765 + -0.7 348,833 + -1.5 348,904 + HUW76_01765 0.21 -0.9 348,999 + HUW76_01765 0.40 -1.8 349,000 + HUW76_01765 0.41 -2.4 349,000 + HUW76_01765 0.41 -2.9 349,021 + HUW76_01765 0.45 -1.5 349,099 + HUW76_01765 0.61 -1.8 349,131 + HUW76_01765 0.67 -1.8 349,147 + HUW76_01765 0.70 -0.7 349,152 + HUW76_01765 0.71 -2.2 349,157 + HUW76_01765 0.72 -2.2 349,216 + HUW76_01765 0.84 -2.2 349,234 + HUW76_01765 0.88 -2.8 349,253 + -0.1 349,750 + -0.1 349,827 + HUW76_01775 0.20 -0.8 349,834 - HUW76_01775 0.22 +0.6 349,985 - HUW76_01775 0.67 +1.3 350,092 - -0.8 350,175 + -0.0 350,175 + -0.5 350,176 - -0.5 350,177 + -0.1 350,185 - -0.8 350,185 - -0.3 350,195 - +0.1 350,195 - +0.2 350,225 + -0.7 350,245 - -0.2 350,247 + +0.5 350,247 + -0.7 350,249 + -0.4 350,249 + +0.3 350,255 - -0.2 350,255 - -0.7 350,257 - +0.8 350,257 - +0.1 350,257 - -0.7 350,292 - +0.7
Or see this region's nucleotide sequence