Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01760

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01755 and HUW76_01760 are separated by 144 nucleotidesHUW76_01760 and HUW76_01765 are separated by 61 nucleotidesHUW76_01765 and HUW76_01770 are separated by 3 nucleotides HUW76_01755: HUW76_01755 - NCS2 family permease, at 346,662 to 347,990 _01755 HUW76_01760: HUW76_01760 - DJ-1/PfpI family protein, at 348,135 to 348,737 _01760 HUW76_01765: HUW76_01765 - peptidylprolyl isomerase, at 348,799 to 349,293 _01765 HUW76_01770: HUW76_01770 - ribose 5-phosphate isomerase B, at 349,297 to 349,746 _01770 Position (kb) 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 347.146 kb on + strand, within HUW76_01755at 347.146 kb on + strand, within HUW76_01755at 347.146 kb on + strand, within HUW76_01755at 347.154 kb on - strand, within HUW76_01755at 347.154 kb on - strand, within HUW76_01755at 347.162 kb on + strand, within HUW76_01755at 347.162 kb on + strand, within HUW76_01755at 347.168 kb on + strand, within HUW76_01755at 347.168 kb on + strand, within HUW76_01755at 347.168 kb on + strand, within HUW76_01755at 347.168 kb on + strand, within HUW76_01755at 347.168 kb on + strand, within HUW76_01755at 347.176 kb on - strand, within HUW76_01755at 347.176 kb on - strand, within HUW76_01755at 347.176 kb on - strand, within HUW76_01755at 347.312 kb on + strand, within HUW76_01755at 347.312 kb on + strand, within HUW76_01755at 347.365 kb on + strand, within HUW76_01755at 347.401 kb on + strand, within HUW76_01755at 347.401 kb on + strand, within HUW76_01755at 347.422 kb on - strand, within HUW76_01755at 347.467 kb on + strand, within HUW76_01755at 347.475 kb on - strand, within HUW76_01755at 347.491 kb on + strand, within HUW76_01755at 347.508 kb on - strand, within HUW76_01755at 347.566 kb on - strand, within HUW76_01755at 347.631 kb on + strand, within HUW76_01755at 347.655 kb on + strand, within HUW76_01755at 347.660 kb on + strand, within HUW76_01755at 347.701 kb on + strand, within HUW76_01755at 347.706 kb on - strand, within HUW76_01755at 347.739 kb on + strand, within HUW76_01755at 347.739 kb on + strand, within HUW76_01755at 347.739 kb on + strand, within HUW76_01755at 347.746 kb on + strand, within HUW76_01755at 347.746 kb on + strand, within HUW76_01755at 347.747 kb on - strand, within HUW76_01755at 347.865 kb on + strandat 347.865 kb on + strandat 347.865 kb on + strandat 347.865 kb on + strandat 347.888 kb on - strandat 347.948 kb on - strandat 347.950 kb on - strandat 347.987 kb on - strandat 348.007 kb on + strandat 348.007 kb on + strandat 348.015 kb on - strandat 348.015 kb on - strandat 348.052 kb on + strandat 348.166 kb on + strandat 348.166 kb on + strandat 348.166 kb on + strandat 348.166 kb on + strandat 348.174 kb on - strandat 348.174 kb on - strandat 348.174 kb on - strandat 348.212 kb on + strand, within HUW76_01760at 348.265 kb on + strand, within HUW76_01760at 348.265 kb on + strand, within HUW76_01760at 348.277 kb on + strand, within HUW76_01760at 348.277 kb on + strand, within HUW76_01760at 348.312 kb on + strand, within HUW76_01760at 348.327 kb on + strand, within HUW76_01760at 348.327 kb on + strand, within HUW76_01760at 348.335 kb on - strand, within HUW76_01760at 348.642 kb on - strand, within HUW76_01760at 348.642 kb on - strand, within HUW76_01760at 348.644 kb on + strand, within HUW76_01760at 348.652 kb on - strand, within HUW76_01760at 348.652 kb on - strand, within HUW76_01760at 348.652 kb on - strand, within HUW76_01760at 348.765 kb on + strandat 348.833 kb on + strandat 348.904 kb on + strand, within HUW76_01765at 348.999 kb on + strand, within HUW76_01765at 349.000 kb on + strand, within HUW76_01765at 349.000 kb on + strand, within HUW76_01765at 349.021 kb on + strand, within HUW76_01765at 349.099 kb on + strand, within HUW76_01765at 349.131 kb on + strand, within HUW76_01765at 349.147 kb on + strand, within HUW76_01765at 349.152 kb on + strand, within HUW76_01765at 349.157 kb on + strand, within HUW76_01765at 349.216 kb on + strand, within HUW76_01765at 349.234 kb on + strand, within HUW76_01765at 349.253 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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347,146 + HUW76_01755 0.36 +0.0
347,146 + HUW76_01755 0.36 -1.0
347,146 + HUW76_01755 0.36 +0.0
347,154 - HUW76_01755 0.37 +0.5
347,154 - HUW76_01755 0.37 +0.9
347,162 + HUW76_01755 0.38 +0.5
347,162 + HUW76_01755 0.38 -0.3
347,168 + HUW76_01755 0.38 -0.7
347,168 + HUW76_01755 0.38 +0.2
347,168 + HUW76_01755 0.38 +0.5
347,168 + HUW76_01755 0.38 +0.2
347,168 + HUW76_01755 0.38 -0.6
347,176 - HUW76_01755 0.39 -0.5
347,176 - HUW76_01755 0.39 +0.9
347,176 - HUW76_01755 0.39 -0.5
347,312 + HUW76_01755 0.49 +0.4
347,312 + HUW76_01755 0.49 -0.4
347,365 + HUW76_01755 0.53 +0.3
347,401 + HUW76_01755 0.56 -0.3
347,401 + HUW76_01755 0.56 -0.5
347,422 - HUW76_01755 0.57 -0.2
347,467 + HUW76_01755 0.61 +0.1
347,475 - HUW76_01755 0.61 +0.1
347,491 + HUW76_01755 0.62 -0.6
347,508 - HUW76_01755 0.64 -0.2
347,566 - HUW76_01755 0.68 +3.1
347,631 + HUW76_01755 0.73 -0.3
347,655 + HUW76_01755 0.75 -0.3
347,660 + HUW76_01755 0.75 +0.4
347,701 + HUW76_01755 0.78 -0.6
347,706 - HUW76_01755 0.79 +0.7
347,739 + HUW76_01755 0.81 -0.3
347,739 + HUW76_01755 0.81 -0.5
347,739 + HUW76_01755 0.81 +0.1
347,746 + HUW76_01755 0.82 -0.5
347,746 + HUW76_01755 0.82 -0.5
347,747 - HUW76_01755 0.82 +0.0
347,865 + -0.8
347,865 + +0.1
347,865 + +0.6
347,865 + -0.8
347,888 - -0.0
347,948 - +0.1
347,950 - +0.8
347,987 - +0.1
348,007 + -0.3
348,007 + -0.6
348,015 - +0.3
348,015 - +1.1
348,052 + -0.0
348,166 + -0.0
348,166 + +0.3
348,166 + -0.5
348,166 + -0.4
348,174 - +0.6
348,174 - +0.9
348,174 - +0.2
348,212 + HUW76_01760 0.13 -0.5
348,265 + HUW76_01760 0.22 -0.5
348,265 + HUW76_01760 0.22 -0.2
348,277 + HUW76_01760 0.24 -0.9
348,277 + HUW76_01760 0.24 -0.9
348,312 + HUW76_01760 0.29 -1.0
348,327 + HUW76_01760 0.32 -0.3
348,327 + HUW76_01760 0.32 +0.4
348,335 - HUW76_01760 0.33 +0.9
348,642 - HUW76_01760 0.84 -0.7
348,642 - HUW76_01760 0.84 +0.4
348,644 + HUW76_01760 0.84 +0.2
348,652 - HUW76_01760 0.86 +0.5
348,652 - HUW76_01760 0.86 -0.5
348,652 - HUW76_01760 0.86 -0.6
348,765 + -0.7
348,833 + -1.5
348,904 + HUW76_01765 0.21 -0.9
348,999 + HUW76_01765 0.40 -1.8
349,000 + HUW76_01765 0.41 -2.4
349,000 + HUW76_01765 0.41 -2.9
349,021 + HUW76_01765 0.45 -1.5
349,099 + HUW76_01765 0.61 -1.8
349,131 + HUW76_01765 0.67 -1.8
349,147 + HUW76_01765 0.70 -0.7
349,152 + HUW76_01765 0.71 -2.2
349,157 + HUW76_01765 0.72 -2.2
349,216 + HUW76_01765 0.84 -2.2
349,234 + HUW76_01765 0.88 -2.8
349,253 + -0.1

Or see this region's nucleotide sequence