Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01355

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01350 and HUW76_01355 are separated by 1 nucleotidesHUW76_01355 and HUW76_01360 are separated by 8 nucleotidesHUW76_01360 and HUW76_01365 are separated by 8 nucleotides HUW76_01350: HUW76_01350 - nucleotide sugar dehydrogenase, at 264,067 to 265,365 _01350 HUW76_01355: HUW76_01355 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 265,367 to 266,557 _01355 HUW76_01360: HUW76_01360 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 266,566 to 267,444 _01360 HUW76_01365: HUW76_01365 - PIG-L family deacetylase, at 267,453 to 268,088 _01365 Position (kb) 265 266 267Strain fitness (log2 ratio) -1 0 1 2 3 4at 264.374 kb on + strand, within HUW76_01350at 264.374 kb on + strand, within HUW76_01350at 264.419 kb on + strand, within HUW76_01350at 264.419 kb on + strand, within HUW76_01350at 264.420 kb on + strand, within HUW76_01350at 264.420 kb on - strand, within HUW76_01350at 264.420 kb on - strand, within HUW76_01350at 264.420 kb on - strand, within HUW76_01350at 264.428 kb on - strand, within HUW76_01350at 264.428 kb on - strand, within HUW76_01350at 264.453 kb on - strand, within HUW76_01350at 264.453 kb on - strand, within HUW76_01350at 264.486 kb on + strand, within HUW76_01350at 264.486 kb on + strand, within HUW76_01350at 264.489 kb on + strand, within HUW76_01350at 264.489 kb on + strand, within HUW76_01350at 264.489 kb on - strand, within HUW76_01350at 264.489 kb on - strand, within HUW76_01350at 264.527 kb on + strand, within HUW76_01350at 264.528 kb on + strand, within HUW76_01350at 264.528 kb on + strand, within HUW76_01350at 264.535 kb on - strand, within HUW76_01350at 264.535 kb on - strand, within HUW76_01350at 264.541 kb on + strand, within HUW76_01350at 264.546 kb on + strand, within HUW76_01350at 264.547 kb on + strand, within HUW76_01350at 264.547 kb on + strand, within HUW76_01350at 264.626 kb on - strand, within HUW76_01350at 264.651 kb on - strand, within HUW76_01350at 264.651 kb on - strand, within HUW76_01350at 264.709 kb on + strand, within HUW76_01350at 264.709 kb on + strand, within HUW76_01350at 264.816 kb on + strand, within HUW76_01350at 264.816 kb on + strand, within HUW76_01350at 264.824 kb on - strand, within HUW76_01350at 264.824 kb on - strand, within HUW76_01350at 264.824 kb on - strand, within HUW76_01350at 264.824 kb on - strand, within HUW76_01350at 264.824 kb on - strand, within HUW76_01350at 264.826 kb on + strand, within HUW76_01350at 264.826 kb on + strand, within HUW76_01350at 264.826 kb on + strand, within HUW76_01350at 264.826 kb on + strand, within HUW76_01350at 264.840 kb on + strand, within HUW76_01350at 264.845 kb on + strand, within HUW76_01350at 264.845 kb on + strand, within HUW76_01350at 264.848 kb on - strand, within HUW76_01350at 264.848 kb on - strand, within HUW76_01350at 264.848 kb on - strand, within HUW76_01350at 264.850 kb on + strand, within HUW76_01350at 264.850 kb on + strand, within HUW76_01350at 264.851 kb on + strand, within HUW76_01350at 264.851 kb on + strand, within HUW76_01350at 264.859 kb on - strand, within HUW76_01350at 264.859 kb on - strand, within HUW76_01350at 264.861 kb on + strand, within HUW76_01350at 264.926 kb on + strand, within HUW76_01350at 264.926 kb on + strand, within HUW76_01350at 265.024 kb on + strand, within HUW76_01350at 265.024 kb on + strand, within HUW76_01350at 265.061 kb on + strand, within HUW76_01350at 265.061 kb on + strand, within HUW76_01350at 265.069 kb on - strand, within HUW76_01350at 265.069 kb on - strand, within HUW76_01350at 265.103 kb on + strand, within HUW76_01350at 265.119 kb on + strand, within HUW76_01350at 265.119 kb on + strand, within HUW76_01350at 265.125 kb on + strand, within HUW76_01350at 265.205 kb on + strand, within HUW76_01350at 265.205 kb on + strand, within HUW76_01350at 265.205 kb on + strand, within HUW76_01350at 265.205 kb on + strand, within HUW76_01350at 265.205 kb on + strand, within HUW76_01350at 265.240 kb on + strandat 265.460 kb on + strandat 265.515 kb on - strand, within HUW76_01355at 265.575 kb on - strand, within HUW76_01355at 265.601 kb on + strand, within HUW76_01355at 265.601 kb on + strand, within HUW76_01355at 265.622 kb on - strand, within HUW76_01355at 265.634 kb on + strand, within HUW76_01355at 265.634 kb on + strand, within HUW76_01355at 265.634 kb on + strand, within HUW76_01355at 265.640 kb on - strand, within HUW76_01355at 265.640 kb on - strand, within HUW76_01355at 265.642 kb on - strand, within HUW76_01355at 265.693 kb on + strand, within HUW76_01355at 265.693 kb on + strand, within HUW76_01355at 265.724 kb on + strand, within HUW76_01355at 265.724 kb on + strand, within HUW76_01355at 265.731 kb on - strand, within HUW76_01355at 265.731 kb on - strand, within HUW76_01355at 265.757 kb on + strand, within HUW76_01355at 265.757 kb on + strand, within HUW76_01355at 265.789 kb on - strand, within HUW76_01355at 265.892 kb on + strand, within HUW76_01355at 265.900 kb on - strand, within HUW76_01355at 266.002 kb on - strand, within HUW76_01355at 266.002 kb on - strand, within HUW76_01355at 266.092 kb on - strand, within HUW76_01355at 266.096 kb on + strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.104 kb on - strand, within HUW76_01355at 266.165 kb on + strand, within HUW76_01355at 266.173 kb on - strand, within HUW76_01355at 266.190 kb on + strand, within HUW76_01355at 266.190 kb on + strand, within HUW76_01355at 266.363 kb on + strand, within HUW76_01355at 266.369 kb on - strand, within HUW76_01355at 266.370 kb on - strand, within HUW76_01355at 266.370 kb on - strand, within HUW76_01355at 266.376 kb on - strand, within HUW76_01355at 266.378 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.380 kb on + strand, within HUW76_01355at 266.385 kb on + strand, within HUW76_01355at 266.385 kb on + strand, within HUW76_01355at 266.386 kb on - strand, within HUW76_01355at 266.386 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.388 kb on - strand, within HUW76_01355at 266.400 kb on - strand, within HUW76_01355at 266.434 kb on - strand, within HUW76_01355at 266.453 kb on + strandat 266.453 kb on + strandat 266.454 kb on - strandat 266.459 kb on - strandat 266.461 kb on - strandat 266.551 kb on - strandat 266.621 kb on + strandat 266.621 kb on + strandat 266.628 kb on + strandat 266.628 kb on + strandat 266.633 kb on + strandat 266.635 kb on + strandat 266.635 kb on + strandat 266.641 kb on - strandat 266.735 kb on + strand, within HUW76_01360at 266.735 kb on - strand, within HUW76_01360at 266.735 kb on - strand, within HUW76_01360at 266.802 kb on + strand, within HUW76_01360at 266.945 kb on - strand, within HUW76_01360at 266.945 kb on - strand, within HUW76_01360at 267.011 kb on + strand, within HUW76_01360at 267.011 kb on + strand, within HUW76_01360at 267.129 kb on + strand, within HUW76_01360at 267.137 kb on - strand, within HUW76_01360at 267.182 kb on + strand, within HUW76_01360at 267.182 kb on + strand, within HUW76_01360at 267.205 kb on + strand, within HUW76_01360at 267.205 kb on + strand, within HUW76_01360at 267.236 kb on + strand, within HUW76_01360at 267.244 kb on + strand, within HUW76_01360at 267.244 kb on + strand, within HUW76_01360at 267.301 kb on + strand, within HUW76_01360at 267.301 kb on + strand, within HUW76_01360at 267.318 kb on - strand, within HUW76_01360at 267.347 kb on + strand, within HUW76_01360at 267.381 kb on - strandat 267.389 kb on - strandat 267.474 kb on + strandat 267.474 kb on + strandat 267.492 kb on + strandat 267.502 kb on + strandat 267.507 kb on + strandat 267.510 kb on - strandat 267.528 kb on - strand, within HUW76_01365at 267.536 kb on - strand, within HUW76_01365

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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264,374 + HUW76_01350 0.24 -0.3
264,374 + HUW76_01350 0.24 -0.8
264,419 + HUW76_01350 0.27 +0.5
264,419 + HUW76_01350 0.27 +0.8
264,420 + HUW76_01350 0.27 +0.6
264,420 - HUW76_01350 0.27 +0.2
264,420 - HUW76_01350 0.27 +0.3
264,420 - HUW76_01350 0.27 +0.4
264,428 - HUW76_01350 0.28 +0.8
264,428 - HUW76_01350 0.28 -0.2
264,453 - HUW76_01350 0.30 +1.0
264,453 - HUW76_01350 0.30 +1.0
264,486 + HUW76_01350 0.32 +1.1
264,486 + HUW76_01350 0.32 +0.4
264,489 + HUW76_01350 0.32 +0.6
264,489 + HUW76_01350 0.32 +0.8
264,489 - HUW76_01350 0.32 +0.5
264,489 - HUW76_01350 0.32 +0.5
264,527 + HUW76_01350 0.35 +0.6
264,528 + HUW76_01350 0.35 -0.2
264,528 + HUW76_01350 0.35 -0.2
264,535 - HUW76_01350 0.36 +0.5
264,535 - HUW76_01350 0.36 +0.5
264,541 + HUW76_01350 0.36 +0.4
264,546 + HUW76_01350 0.37 +0.2
264,547 + HUW76_01350 0.37 +0.3
264,547 + HUW76_01350 0.37 +0.6
264,626 - HUW76_01350 0.43 +1.6
264,651 - HUW76_01350 0.45 +2.6
264,651 - HUW76_01350 0.45 +1.9
264,709 + HUW76_01350 0.49 +0.3
264,709 + HUW76_01350 0.49 +0.5
264,816 + HUW76_01350 0.58 +0.5
264,816 + HUW76_01350 0.58 +0.4
264,824 - HUW76_01350 0.58 +2.1
264,824 - HUW76_01350 0.58 +1.3
264,824 - HUW76_01350 0.58 +1.6
264,824 - HUW76_01350 0.58 +1.0
264,824 - HUW76_01350 0.58 +0.9
264,826 + HUW76_01350 0.58 -0.2
264,826 + HUW76_01350 0.58 -0.3
264,826 + HUW76_01350 0.58 +0.7
264,826 + HUW76_01350 0.58 +0.4
264,840 + HUW76_01350 0.60 +0.0
264,845 + HUW76_01350 0.60 +0.8
264,845 + HUW76_01350 0.60 +0.2
264,848 - HUW76_01350 0.60 +1.1
264,848 - HUW76_01350 0.60 -0.3
264,848 - HUW76_01350 0.60 +0.5
264,850 + HUW76_01350 0.60 +1.1
264,850 + HUW76_01350 0.60 +0.4
264,851 + HUW76_01350 0.60 +0.1
264,851 + HUW76_01350 0.60 +0.2
264,859 - HUW76_01350 0.61 +1.3
264,859 - HUW76_01350 0.61 +2.3
264,861 + HUW76_01350 0.61 +0.7
264,926 + HUW76_01350 0.66 +1.1
264,926 + HUW76_01350 0.66 +0.2
265,024 + HUW76_01350 0.74 -0.2
265,024 + HUW76_01350 0.74 +1.0
265,061 + HUW76_01350 0.77 +0.6
265,061 + HUW76_01350 0.77 +0.4
265,069 - HUW76_01350 0.77 +0.5
265,069 - HUW76_01350 0.77 -0.5
265,103 + HUW76_01350 0.80 +0.3
265,119 + HUW76_01350 0.81 +0.8
265,119 + HUW76_01350 0.81 -0.1
265,125 + HUW76_01350 0.81 +0.5
265,205 + HUW76_01350 0.88 -0.6
265,205 + HUW76_01350 0.88 +0.6
265,205 + HUW76_01350 0.88 -0.0
265,205 + HUW76_01350 0.88 +1.0
265,205 + HUW76_01350 0.88 -0.1
265,240 + +0.8
265,460 + +2.8
265,515 - HUW76_01355 0.12 +1.2
265,575 - HUW76_01355 0.17 +0.7
265,601 + HUW76_01355 0.20 +0.9
265,601 + HUW76_01355 0.20 +0.7
265,622 - HUW76_01355 0.21 +0.2
265,634 + HUW76_01355 0.22 +0.1
265,634 + HUW76_01355 0.22 +0.7
265,634 + HUW76_01355 0.22 +1.3
265,640 - HUW76_01355 0.23 -0.3
265,640 - HUW76_01355 0.23 +0.7
265,642 - HUW76_01355 0.23 +1.0
265,693 + HUW76_01355 0.27 +0.0
265,693 + HUW76_01355 0.27 +0.2
265,724 + HUW76_01355 0.30 +0.8
265,724 + HUW76_01355 0.30 +0.1
265,731 - HUW76_01355 0.31 +1.2
265,731 - HUW76_01355 0.31 -0.3
265,757 + HUW76_01355 0.33 +0.6
265,757 + HUW76_01355 0.33 +1.7
265,789 - HUW76_01355 0.35 +0.1
265,892 + HUW76_01355 0.44 +1.1
265,900 - HUW76_01355 0.45 +2.6
266,002 - HUW76_01355 0.53 -0.3
266,002 - HUW76_01355 0.53 +2.8
266,092 - HUW76_01355 0.61 +0.0
266,096 + HUW76_01355 0.61 +1.9
266,104 - HUW76_01355 0.62 +2.2
266,104 - HUW76_01355 0.62 +1.0
266,104 - HUW76_01355 0.62 +0.5
266,104 - HUW76_01355 0.62 +2.7
266,104 - HUW76_01355 0.62 +1.9
266,104 - HUW76_01355 0.62 +1.1
266,104 - HUW76_01355 0.62 +1.6
266,104 - HUW76_01355 0.62 -0.5
266,104 - HUW76_01355 0.62 +1.2
266,165 + HUW76_01355 0.67 +1.5
266,173 - HUW76_01355 0.68 +1.1
266,190 + HUW76_01355 0.69 +0.5
266,190 + HUW76_01355 0.69 -0.3
266,363 + HUW76_01355 0.84 +0.2
266,369 - HUW76_01355 0.84 +1.5
266,370 - HUW76_01355 0.84 -0.6
266,370 - HUW76_01355 0.84 +0.1
266,376 - HUW76_01355 0.85 +0.3
266,378 + HUW76_01355 0.85 +0.3
266,380 + HUW76_01355 0.85 +0.2
266,380 + HUW76_01355 0.85 +1.7
266,380 + HUW76_01355 0.85 +0.8
266,380 + HUW76_01355 0.85 +0.5
266,380 + HUW76_01355 0.85 +1.4
266,380 + HUW76_01355 0.85 +1.3
266,380 + HUW76_01355 0.85 +0.8
266,380 + HUW76_01355 0.85 +0.7
266,380 + HUW76_01355 0.85 +1.1
266,380 + HUW76_01355 0.85 +1.0
266,380 + HUW76_01355 0.85 +0.8
266,380 + HUW76_01355 0.85 +0.9
266,385 + HUW76_01355 0.85 +3.4
266,385 + HUW76_01355 0.85 +0.7
266,386 - HUW76_01355 0.86 +0.3
266,386 - HUW76_01355 0.86 +1.9
266,388 - HUW76_01355 0.86 +4.5
266,388 - HUW76_01355 0.86 +1.0
266,388 - HUW76_01355 0.86 +0.5
266,388 - HUW76_01355 0.86 +2.1
266,388 - HUW76_01355 0.86 +0.6
266,388 - HUW76_01355 0.86 -0.4
266,388 - HUW76_01355 0.86 +0.9
266,388 - HUW76_01355 0.86 +0.1
266,388 - HUW76_01355 0.86 +0.8
266,388 - HUW76_01355 0.86 +0.6
266,388 - HUW76_01355 0.86 +4.2
266,400 - HUW76_01355 0.87 +0.2
266,434 - HUW76_01355 0.90 +1.1
266,453 + +0.2
266,453 + +1.0
266,454 - +0.5
266,459 - +1.5
266,461 - +0.1
266,551 - +0.3
266,621 + +0.1
266,621 + +1.4
266,628 + +0.2
266,628 + +0.9
266,633 + +0.5
266,635 + +0.3
266,635 + +1.1
266,641 - +0.5
266,735 + HUW76_01360 0.19 +0.7
266,735 - HUW76_01360 0.19 +0.3
266,735 - HUW76_01360 0.19 +0.0
266,802 + HUW76_01360 0.27 -1.0
266,945 - HUW76_01360 0.43 +2.1
266,945 - HUW76_01360 0.43 -0.1
267,011 + HUW76_01360 0.51 +0.7
267,011 + HUW76_01360 0.51 +0.5
267,129 + HUW76_01360 0.64 -0.2
267,137 - HUW76_01360 0.65 +2.0
267,182 + HUW76_01360 0.70 +0.2
267,182 + HUW76_01360 0.70 -0.0
267,205 + HUW76_01360 0.73 +0.2
267,205 + HUW76_01360 0.73 +0.2
267,236 + HUW76_01360 0.76 +0.6
267,244 + HUW76_01360 0.77 +0.2
267,244 + HUW76_01360 0.77 -0.1
267,301 + HUW76_01360 0.84 -0.9
267,301 + HUW76_01360 0.84 -0.2
267,318 - HUW76_01360 0.86 +0.2
267,347 + HUW76_01360 0.89 -0.6
267,381 - +0.8
267,389 - -0.4
267,474 + +0.6
267,474 + +0.2
267,492 + +0.9
267,502 + +0.5
267,507 + -0.1
267,510 - +2.5
267,528 - HUW76_01365 0.12 +1.3
267,536 - HUW76_01365 0.13 +1.5

Or see this region's nucleotide sequence