Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00520

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_00515 and HUW76_00520 overlap by 8 nucleotidesHUW76_00520 and HUW76_00525 are separated by 100 nucleotidesHUW76_00525 and HUW76_00530 are separated by 113 nucleotides HUW76_00515: HUW76_00515 - ribonucleoside-diphosphate reductase subunit alpha, at 101,569 to 103,836 _00515 HUW76_00520: HUW76_00520 - ribonucleotide-diphosphate reductase subunit beta, at 103,829 to 104,863 _00520 HUW76_00525: HUW76_00525 - thioredoxin family protein, at 104,964 to 105,272 _00525 HUW76_00530: HUW76_00530 - flavin reductase family protein, at 105,386 to 105,949 _00530 Position (kb) 103 104 105Strain fitness (log2 ratio) -1 0 1 2at 103.449 kb on + strand, within HUW76_00515at 103.449 kb on + strand, within HUW76_00515at 103.545 kb on + strand, within HUW76_00515at 103.954 kb on + strand, within HUW76_00520at 104.927 kb on + strandat 104.939 kb on + strandat 104.939 kb on + strandat 105.013 kb on - strand, within HUW76_00525at 105.056 kb on + strand, within HUW76_00525at 105.056 kb on + strand, within HUW76_00525at 105.091 kb on + strand, within HUW76_00525at 105.093 kb on + strand, within HUW76_00525at 105.159 kb on - strand, within HUW76_00525at 105.159 kb on - strand, within HUW76_00525at 105.159 kb on - strand, within HUW76_00525at 105.159 kb on - strand, within HUW76_00525at 105.264 kb on - strandat 105.264 kb on - strandat 105.264 kb on - strandat 105.264 kb on - strandat 105.273 kb on + strandat 105.320 kb on - strandat 105.349 kb on + strandat 105.349 kb on + strandat 105.423 kb on - strandat 105.448 kb on - strand, within HUW76_00530at 105.448 kb on - strand, within HUW76_00530at 105.466 kb on + strand, within HUW76_00530at 105.466 kb on + strand, within HUW76_00530at 105.474 kb on - strand, within HUW76_00530at 105.486 kb on - strand, within HUW76_00530at 105.486 kb on - strand, within HUW76_00530at 105.486 kb on - strand, within HUW76_00530at 105.489 kb on + strand, within HUW76_00530at 105.494 kb on + strand, within HUW76_00530at 105.501 kb on + strand, within HUW76_00530at 105.504 kb on - strand, within HUW76_00530at 105.504 kb on - strand, within HUW76_00530at 105.523 kb on - strand, within HUW76_00530at 105.523 kb on - strand, within HUW76_00530at 105.533 kb on - strand, within HUW76_00530at 105.538 kb on + strand, within HUW76_00530at 105.538 kb on + strand, within HUW76_00530at 105.538 kb on + strand, within HUW76_00530at 105.539 kb on - strand, within HUW76_00530at 105.546 kb on - strand, within HUW76_00530at 105.751 kb on - strand, within HUW76_00530at 105.751 kb on - strand, within HUW76_00530at 105.769 kb on - strand, within HUW76_00530at 105.769 kb on - strand, within HUW76_00530at 105.769 kb on - strand, within HUW76_00530at 105.770 kb on - strand, within HUW76_00530at 105.770 kb on - strand, within HUW76_00530at 105.772 kb on + strand, within HUW76_00530at 105.772 kb on + strand, within HUW76_00530at 105.772 kb on + strand, within HUW76_00530at 105.772 kb on + strand, within HUW76_00530at 105.780 kb on - strand, within HUW76_00530at 105.780 kb on - strand, within HUW76_00530at 105.852 kb on + strand, within HUW76_00530at 105.859 kb on + strand, within HUW76_00530at 105.859 kb on + strand, within HUW76_00530

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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103,449 + HUW76_00515 0.83 +2.0
103,449 + HUW76_00515 0.83 +1.9
103,545 + HUW76_00515 0.87 -1.2
103,954 + HUW76_00520 0.12 -0.7
104,927 + -0.5
104,939 + -0.9
104,939 + +0.1
105,013 - HUW76_00525 0.16 -0.3
105,056 + HUW76_00525 0.30 -0.3
105,056 + HUW76_00525 0.30 -0.4
105,091 + HUW76_00525 0.41 -1.2
105,093 + HUW76_00525 0.42 -0.3
105,159 - HUW76_00525 0.63 -0.2
105,159 - HUW76_00525 0.63 -0.9
105,159 - HUW76_00525 0.63 -0.7
105,159 - HUW76_00525 0.63 -0.6
105,264 - -0.3
105,264 - -0.4
105,264 - -0.5
105,264 - -0.5
105,273 + -0.7
105,320 - -0.0
105,349 + -0.3
105,349 + -0.0
105,423 - -0.2
105,448 - HUW76_00530 0.11 -0.1
105,448 - HUW76_00530 0.11 -0.4
105,466 + HUW76_00530 0.14 -0.2
105,466 + HUW76_00530 0.14 +0.2
105,474 - HUW76_00530 0.16 -0.1
105,486 - HUW76_00530 0.18 -1.0
105,486 - HUW76_00530 0.18 -0.3
105,486 - HUW76_00530 0.18 -0.5
105,489 + HUW76_00530 0.18 +0.0
105,494 + HUW76_00530 0.19 -0.6
105,501 + HUW76_00530 0.20 -0.1
105,504 - HUW76_00530 0.21 -0.2
105,504 - HUW76_00530 0.21 -0.4
105,523 - HUW76_00530 0.24 -1.0
105,523 - HUW76_00530 0.24 -0.7
105,533 - HUW76_00530 0.26 +0.1
105,538 + HUW76_00530 0.27 -0.3
105,538 + HUW76_00530 0.27 -0.9
105,538 + HUW76_00530 0.27 -0.9
105,539 - HUW76_00530 0.27 +0.5
105,546 - HUW76_00530 0.28 -0.2
105,751 - HUW76_00530 0.65 +1.6
105,751 - HUW76_00530 0.65 -0.1
105,769 - HUW76_00530 0.68 -0.8
105,769 - HUW76_00530 0.68 -0.7
105,769 - HUW76_00530 0.68 +0.8
105,770 - HUW76_00530 0.68 -0.2
105,770 - HUW76_00530 0.68 +0.6
105,772 + HUW76_00530 0.68 -0.2
105,772 + HUW76_00530 0.68 -0.5
105,772 + HUW76_00530 0.68 -0.6
105,772 + HUW76_00530 0.68 -0.8
105,780 - HUW76_00530 0.70 +1.2
105,780 - HUW76_00530 0.70 +1.4
105,852 + HUW76_00530 0.83 -0.7
105,859 + HUW76_00530 0.84 -1.6
105,859 + HUW76_00530 0.84 +0.1

Or see this region's nucleotide sequence