Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00455

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_00450 and HUW76_00455 are separated by 21 nucleotidesHUW76_00455 and HUW76_00460 are separated by 354 nucleotides HUW76_00450: HUW76_00450 - haloacid dehalogenase-like hydrolase, at 90,439 to 91,536 _00450 HUW76_00455: HUW76_00455 - iron-containing alcohol dehydrogenase, at 91,558 to 92,676 _00455 HUW76_00460: HUW76_00460 - hypothetical protein, at 93,031 to 93,594 _00460 Position (kb) 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2 3at 90.561 kb on + strand, within HUW76_00450at 90.729 kb on - strand, within HUW76_00450at 90.767 kb on - strand, within HUW76_00450at 90.952 kb on + strand, within HUW76_00450at 90.960 kb on - strand, within HUW76_00450at 90.997 kb on + strand, within HUW76_00450at 91.004 kb on - strand, within HUW76_00450at 91.018 kb on + strand, within HUW76_00450at 91.020 kb on + strand, within HUW76_00450at 91.028 kb on - strand, within HUW76_00450at 91.038 kb on - strand, within HUW76_00450at 91.053 kb on + strand, within HUW76_00450at 91.056 kb on - strand, within HUW76_00450at 91.088 kb on + strand, within HUW76_00450at 91.088 kb on + strand, within HUW76_00450at 91.130 kb on + strand, within HUW76_00450at 91.130 kb on + strand, within HUW76_00450at 91.130 kb on + strand, within HUW76_00450at 91.188 kb on + strand, within HUW76_00450at 91.192 kb on - strand, within HUW76_00450at 91.192 kb on - strand, within HUW76_00450at 91.194 kb on + strand, within HUW76_00450at 91.194 kb on + strand, within HUW76_00450at 91.196 kb on - strand, within HUW76_00450at 91.196 kb on - strand, within HUW76_00450at 91.196 kb on - strand, within HUW76_00450at 91.203 kb on + strand, within HUW76_00450at 91.222 kb on + strand, within HUW76_00450at 91.252 kb on + strand, within HUW76_00450at 91.252 kb on + strand, within HUW76_00450at 91.361 kb on + strand, within HUW76_00450at 91.361 kb on + strand, within HUW76_00450at 91.361 kb on + strand, within HUW76_00450at 91.363 kb on + strand, within HUW76_00450at 91.369 kb on - strand, within HUW76_00450at 91.369 kb on - strand, within HUW76_00450at 91.369 kb on - strand, within HUW76_00450at 91.369 kb on - strand, within HUW76_00450at 91.370 kb on - strand, within HUW76_00450at 91.429 kb on + strandat 91.429 kb on + strandat 91.429 kb on + strandat 91.497 kb on + strandat 91.497 kb on + strandat 91.497 kb on + strandat 91.497 kb on + strandat 91.516 kb on + strandat 91.516 kb on + strandat 91.552 kb on - strandat 91.659 kb on + strandat 91.660 kb on + strandat 91.660 kb on + strandat 91.660 kb on + strandat 91.660 kb on + strandat 91.667 kb on - strandat 91.667 kb on - strandat 91.668 kb on - strandat 91.668 kb on - strandat 91.669 kb on - strandat 91.743 kb on + strand, within HUW76_00455at 91.743 kb on + strand, within HUW76_00455at 91.744 kb on + strand, within HUW76_00455at 91.754 kb on + strand, within HUW76_00455at 91.754 kb on + strand, within HUW76_00455at 91.840 kb on - strand, within HUW76_00455at 91.840 kb on - strand, within HUW76_00455at 91.843 kb on - strand, within HUW76_00455at 91.843 kb on - strand, within HUW76_00455at 91.855 kb on + strand, within HUW76_00455at 91.855 kb on + strand, within HUW76_00455at 91.855 kb on + strand, within HUW76_00455at 91.855 kb on + strand, within HUW76_00455at 91.863 kb on - strand, within HUW76_00455at 91.863 kb on - strand, within HUW76_00455at 91.863 kb on - strand, within HUW76_00455at 91.867 kb on + strand, within HUW76_00455at 91.868 kb on + strand, within HUW76_00455at 91.868 kb on + strand, within HUW76_00455at 91.946 kb on + strand, within HUW76_00455at 91.961 kb on + strand, within HUW76_00455at 91.967 kb on + strand, within HUW76_00455at 91.994 kb on - strand, within HUW76_00455at 91.994 kb on - strand, within HUW76_00455at 92.008 kb on + strand, within HUW76_00455at 92.013 kb on + strand, within HUW76_00455at 92.016 kb on - strand, within HUW76_00455at 92.016 kb on - strand, within HUW76_00455at 92.018 kb on + strand, within HUW76_00455at 92.018 kb on + strand, within HUW76_00455at 92.018 kb on + strand, within HUW76_00455at 92.018 kb on + strand, within HUW76_00455at 92.018 kb on + strand, within HUW76_00455at 92.018 kb on + strand, within HUW76_00455at 92.018 kb on + strand, within HUW76_00455at 92.026 kb on - strand, within HUW76_00455at 92.026 kb on - strand, within HUW76_00455at 92.029 kb on + strand, within HUW76_00455at 92.031 kb on + strand, within HUW76_00455at 92.031 kb on - strand, within HUW76_00455at 92.031 kb on - strand, within HUW76_00455at 92.031 kb on - strand, within HUW76_00455at 92.086 kb on + strand, within HUW76_00455at 92.108 kb on + strand, within HUW76_00455at 92.108 kb on + strand, within HUW76_00455at 92.110 kb on + strand, within HUW76_00455at 92.110 kb on + strand, within HUW76_00455at 92.132 kb on + strand, within HUW76_00455at 92.134 kb on - strand, within HUW76_00455at 92.165 kb on + strand, within HUW76_00455at 92.199 kb on + strand, within HUW76_00455at 92.199 kb on + strand, within HUW76_00455at 92.233 kb on - strand, within HUW76_00455at 92.291 kb on + strand, within HUW76_00455at 92.303 kb on + strand, within HUW76_00455at 92.303 kb on + strand, within HUW76_00455at 92.311 kb on - strand, within HUW76_00455at 92.315 kb on + strand, within HUW76_00455at 92.315 kb on + strand, within HUW76_00455at 92.315 kb on + strand, within HUW76_00455at 92.315 kb on + strand, within HUW76_00455at 92.321 kb on - strand, within HUW76_00455at 92.321 kb on - strand, within HUW76_00455at 92.321 kb on - strand, within HUW76_00455at 92.323 kb on - strand, within HUW76_00455at 92.336 kb on - strand, within HUW76_00455at 92.336 kb on - strand, within HUW76_00455at 92.338 kb on + strand, within HUW76_00455at 92.338 kb on + strand, within HUW76_00455at 92.346 kb on - strand, within HUW76_00455at 92.346 kb on - strand, within HUW76_00455at 92.348 kb on + strand, within HUW76_00455at 92.348 kb on + strand, within HUW76_00455at 92.382 kb on + strand, within HUW76_00455at 92.382 kb on + strand, within HUW76_00455at 92.390 kb on - strand, within HUW76_00455at 92.425 kb on - strand, within HUW76_00455at 92.438 kb on - strand, within HUW76_00455at 92.438 kb on - strand, within HUW76_00455at 92.455 kb on - strand, within HUW76_00455at 92.455 kb on - strand, within HUW76_00455at 92.470 kb on + strand, within HUW76_00455at 92.470 kb on + strand, within HUW76_00455at 92.499 kb on + strand, within HUW76_00455at 92.533 kb on + strand, within HUW76_00455at 92.533 kb on + strand, within HUW76_00455at 92.536 kb on - strand, within HUW76_00455at 92.540 kb on + strand, within HUW76_00455at 92.540 kb on + strand, within HUW76_00455at 92.548 kb on - strand, within HUW76_00455at 92.569 kb on + strandat 92.569 kb on + strandat 92.588 kb on + strandat 92.588 kb on + strandat 92.593 kb on + strandat 92.595 kb on + strandat 92.602 kb on + strandat 92.602 kb on + strandat 92.602 kb on + strandat 92.610 kb on - strandat 92.610 kb on - strandat 92.635 kb on - strandat 92.637 kb on - strandat 92.639 kb on + strandat 92.840 kb on + strandat 92.848 kb on - strandat 92.854 kb on + strandat 92.854 kb on + strandat 92.989 kb on + strandat 92.989 kb on + strandat 92.997 kb on - strandat 92.997 kb on - strandat 92.997 kb on - strandat 92.997 kb on - strandat 93.102 kb on - strand, within HUW76_00460at 93.143 kb on + strand, within HUW76_00460at 93.143 kb on + strand, within HUW76_00460at 93.154 kb on + strand, within HUW76_00460at 93.154 kb on + strand, within HUW76_00460at 93.164 kb on + strand, within HUW76_00460at 93.203 kb on - strand, within HUW76_00460at 93.318 kb on - strand, within HUW76_00460at 93.350 kb on - strand, within HUW76_00460at 93.446 kb on + strand, within HUW76_00460at 93.446 kb on + strand, within HUW76_00460at 93.446 kb on + strand, within HUW76_00460at 93.448 kb on + strand, within HUW76_00460at 93.448 kb on + strand, within HUW76_00460at 93.453 kb on + strand, within HUW76_00460at 93.453 kb on + strand, within HUW76_00460at 93.453 kb on + strand, within HUW76_00460at 93.453 kb on + strand, within HUW76_00460at 93.463 kb on + strand, within HUW76_00460at 93.463 kb on + strand, within HUW76_00460at 93.466 kb on - strand, within HUW76_00460at 93.468 kb on - strand, within HUW76_00460at 93.468 kb on - strand, within HUW76_00460at 93.490 kb on - strand, within HUW76_00460at 93.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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90,561 + HUW76_00450 0.11 +0.5
90,729 - HUW76_00450 0.26 -0.2
90,767 - HUW76_00450 0.30 -0.2
90,952 + HUW76_00450 0.47 +0.3
90,960 - HUW76_00450 0.47 +0.1
90,997 + HUW76_00450 0.51 +0.3
91,004 - HUW76_00450 0.51 +1.4
91,018 + HUW76_00450 0.53 -0.6
91,020 + HUW76_00450 0.53 -0.3
91,028 - HUW76_00450 0.54 +1.7
91,038 - HUW76_00450 0.55 -1.0
91,053 + HUW76_00450 0.56 -0.5
91,056 - HUW76_00450 0.56 +1.3
91,088 + HUW76_00450 0.59 +0.2
91,088 + HUW76_00450 0.59 -0.1
91,130 + HUW76_00450 0.63 -0.3
91,130 + HUW76_00450 0.63 +0.5
91,130 + HUW76_00450 0.63 -0.1
91,188 + HUW76_00450 0.68 +0.9
91,192 - HUW76_00450 0.69 +0.5
91,192 - HUW76_00450 0.69 +2.2
91,194 + HUW76_00450 0.69 +0.0
91,194 + HUW76_00450 0.69 -0.7
91,196 - HUW76_00450 0.69 +1.2
91,196 - HUW76_00450 0.69 +1.5
91,196 - HUW76_00450 0.69 +1.0
91,203 + HUW76_00450 0.70 -0.8
91,222 + HUW76_00450 0.71 +0.5
91,252 + HUW76_00450 0.74 -0.0
91,252 + HUW76_00450 0.74 +0.1
91,361 + HUW76_00450 0.84 +0.0
91,361 + HUW76_00450 0.84 +0.6
91,361 + HUW76_00450 0.84 -0.7
91,363 + HUW76_00450 0.84 -0.1
91,369 - HUW76_00450 0.85 +0.2
91,369 - HUW76_00450 0.85 +1.0
91,369 - HUW76_00450 0.85 +1.0
91,369 - HUW76_00450 0.85 +0.7
91,370 - HUW76_00450 0.85 +1.4
91,429 + -0.2
91,429 + +3.4
91,429 + -0.5
91,497 + -0.9
91,497 + +0.2
91,497 + -0.6
91,497 + -0.5
91,516 + -0.3
91,516 + +0.2
91,552 - +0.1
91,659 + +0.0
91,660 + -0.1
91,660 + -0.5
91,660 + -0.6
91,660 + -0.2
91,667 - +0.1
91,667 - +2.3
91,668 - +2.0
91,668 - +2.0
91,669 - +0.7
91,743 + HUW76_00455 0.17 +0.7
91,743 + HUW76_00455 0.17 +1.3
91,744 + HUW76_00455 0.17 -0.2
91,754 + HUW76_00455 0.18 -1.3
91,754 + HUW76_00455 0.18 +0.1
91,840 - HUW76_00455 0.25 -0.8
91,840 - HUW76_00455 0.25 +0.2
91,843 - HUW76_00455 0.25 +1.0
91,843 - HUW76_00455 0.25 +0.4
91,855 + HUW76_00455 0.27 +0.1
91,855 + HUW76_00455 0.27 -0.1
91,855 + HUW76_00455 0.27 -0.1
91,855 + HUW76_00455 0.27 +0.5
91,863 - HUW76_00455 0.27 +0.3
91,863 - HUW76_00455 0.27 +0.3
91,863 - HUW76_00455 0.27 +1.0
91,867 + HUW76_00455 0.28 -1.0
91,868 + HUW76_00455 0.28 +0.6
91,868 + HUW76_00455 0.28 +0.2
91,946 + HUW76_00455 0.35 -0.8
91,961 + HUW76_00455 0.36 +0.2
91,967 + HUW76_00455 0.37 -0.2
91,994 - HUW76_00455 0.39 -0.2
91,994 - HUW76_00455 0.39 -0.3
92,008 + HUW76_00455 0.40 -0.8
92,013 + HUW76_00455 0.41 -0.3
92,016 - HUW76_00455 0.41 -0.2
92,016 - HUW76_00455 0.41 +0.6
92,018 + HUW76_00455 0.41 -0.5
92,018 + HUW76_00455 0.41 -0.4
92,018 + HUW76_00455 0.41 -0.1
92,018 + HUW76_00455 0.41 -0.8
92,018 + HUW76_00455 0.41 -0.2
92,018 + HUW76_00455 0.41 +0.0
92,018 + HUW76_00455 0.41 +0.1
92,026 - HUW76_00455 0.42 -0.0
92,026 - HUW76_00455 0.42 -1.3
92,029 + HUW76_00455 0.42 -0.3
92,031 + HUW76_00455 0.42 -0.0
92,031 - HUW76_00455 0.42 +0.2
92,031 - HUW76_00455 0.42 -0.6
92,031 - HUW76_00455 0.42 -0.6
92,086 + HUW76_00455 0.47 +0.4
92,108 + HUW76_00455 0.49 -0.0
92,108 + HUW76_00455 0.49 -0.5
92,110 + HUW76_00455 0.49 -0.2
92,110 + HUW76_00455 0.49 -0.4
92,132 + HUW76_00455 0.51 -0.5
92,134 - HUW76_00455 0.51 +0.8
92,165 + HUW76_00455 0.54 -0.2
92,199 + HUW76_00455 0.57 -0.6
92,199 + HUW76_00455 0.57 -0.9
92,233 - HUW76_00455 0.60 +0.6
92,291 + HUW76_00455 0.66 -0.1
92,303 + HUW76_00455 0.67 -0.5
92,303 + HUW76_00455 0.67 -1.0
92,311 - HUW76_00455 0.67 +0.6
92,315 + HUW76_00455 0.68 -0.5
92,315 + HUW76_00455 0.68 +1.3
92,315 + HUW76_00455 0.68 -0.2
92,315 + HUW76_00455 0.68 -0.1
92,321 - HUW76_00455 0.68 +0.0
92,321 - HUW76_00455 0.68 -0.8
92,321 - HUW76_00455 0.68 +0.3
92,323 - HUW76_00455 0.68 +0.1
92,336 - HUW76_00455 0.70 +1.2
92,336 - HUW76_00455 0.70 +0.2
92,338 + HUW76_00455 0.70 -0.2
92,338 + HUW76_00455 0.70 -0.5
92,346 - HUW76_00455 0.70 -0.5
92,346 - HUW76_00455 0.70 -0.4
92,348 + HUW76_00455 0.71 -0.4
92,348 + HUW76_00455 0.71 -0.6
92,382 + HUW76_00455 0.74 +1.1
92,382 + HUW76_00455 0.74 +0.5
92,390 - HUW76_00455 0.74 -0.3
92,425 - HUW76_00455 0.77 -0.4
92,438 - HUW76_00455 0.79 -0.2
92,438 - HUW76_00455 0.79 +0.6
92,455 - HUW76_00455 0.80 -0.8
92,455 - HUW76_00455 0.80 +0.5
92,470 + HUW76_00455 0.82 -1.2
92,470 + HUW76_00455 0.82 +0.0
92,499 + HUW76_00455 0.84 -2.0
92,533 + HUW76_00455 0.87 -1.1
92,533 + HUW76_00455 0.87 -0.3
92,536 - HUW76_00455 0.87 +1.3
92,540 + HUW76_00455 0.88 -0.3
92,540 + HUW76_00455 0.88 -0.0
92,548 - HUW76_00455 0.88 +0.5
92,569 + -0.3
92,569 + -0.9
92,588 + -0.7
92,588 + +0.1
92,593 + -0.6
92,595 + +0.0
92,602 + -0.2
92,602 + +0.2
92,602 + -0.2
92,610 - +0.2
92,610 - +0.7
92,635 - +1.5
92,637 - +2.0
92,639 + -0.1
92,840 + -0.4
92,848 - -0.6
92,854 + -0.3
92,854 + -1.1
92,989 + -0.4
92,989 + -0.1
92,997 - -0.2
92,997 - -0.7
92,997 - -0.0
92,997 - -0.3
93,102 - HUW76_00460 0.13 +0.6
93,143 + HUW76_00460 0.20 -0.3
93,143 + HUW76_00460 0.20 -0.1
93,154 + HUW76_00460 0.22 -0.1
93,154 + HUW76_00460 0.22 -0.4
93,164 + HUW76_00460 0.24 +0.4
93,203 - HUW76_00460 0.30 +1.0
93,318 - HUW76_00460 0.51 +0.3
93,350 - HUW76_00460 0.57 +0.2
93,446 + HUW76_00460 0.74 -0.5
93,446 + HUW76_00460 0.74 +0.2
93,446 + HUW76_00460 0.74 -0.9
93,448 + HUW76_00460 0.74 -0.7
93,448 + HUW76_00460 0.74 -0.4
93,453 + HUW76_00460 0.75 -0.8
93,453 + HUW76_00460 0.75 +0.9
93,453 + HUW76_00460 0.75 -0.1
93,453 + HUW76_00460 0.75 +1.0
93,463 + HUW76_00460 0.77 -0.3
93,463 + HUW76_00460 0.77 -0.4
93,466 - HUW76_00460 0.77 -1.0
93,468 - HUW76_00460 0.77 +0.9
93,468 - HUW76_00460 0.77 +0.8
93,490 - HUW76_00460 0.81 -0.3
93,540 + -0.3

Or see this region's nucleotide sequence