Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF643

Experiment: Ying_OrganicAcid7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF640 and GFF641 are separated by 176 nucleotidesGFF641 and GFF642 are separated by 102 nucleotidesGFF642 and GFF643 overlap by 1 nucleotidesGFF643 and GFF644 are separated by 29 nucleotidesGFF644 and GFF645 are separated by 64 nucleotides GFF640 - Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7), at 317,695 to 318,639 GFF640 GFF641 - Rubredoxin, at 318,816 to 318,968 GFF641 GFF642 - twitching motility protein PilG, at 319,071 to 319,466 GFF642 GFF643 - twitching motility protein PilH, at 319,466 to 319,831 GFF643 GFF644 - type IV pili signal transduction protein PilI, at 319,861 to 320,400 GFF644 GFF645 - twitching motility protein PilJ, at 320,465 to 322,711 GFF645 Position (kb) 319 320Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 318.631 kb on - strandat 318.643 kb on + strandat 318.643 kb on + strandat 318.643 kb on + strandat 318.757 kb on + strandat 318.757 kb on + strandat 318.758 kb on - strandat 318.758 kb on - strandat 318.758 kb on - strandat 318.758 kb on - strandat 318.758 kb on - strandat 318.788 kb on + strandat 318.788 kb on + strandat 318.788 kb on + strandat 318.788 kb on + strandat 318.788 kb on + strandat 318.789 kb on - strandat 318.790 kb on + strandat 318.791 kb on - strandat 318.791 kb on - strandat 318.791 kb on - strandat 319.010 kb on + strandat 319.016 kb on + strandat 319.016 kb on + strandat 319.017 kb on - strandat 319.017 kb on - strandat 319.017 kb on - strandat 319.062 kb on + strandat 319.063 kb on - strandat 319.063 kb on - strandat 319.118 kb on + strand, within GFF642at 319.118 kb on + strand, within GFF642at 319.118 kb on + strand, within GFF642at 319.118 kb on + strand, within GFF642at 319.119 kb on - strand, within GFF642at 319.119 kb on - strand, within GFF642at 319.119 kb on - strand, within GFF642at 319.215 kb on + strand, within GFF642at 319.216 kb on - strand, within GFF642at 319.216 kb on - strand, within GFF642at 319.386 kb on + strand, within GFF642at 319.386 kb on + strand, within GFF642at 319.387 kb on - strand, within GFF642at 319.387 kb on - strand, within GFF642at 319.387 kb on - strand, within GFF642at 319.387 kb on - strand, within GFF642at 319.387 kb on - strand, within GFF642at 319.403 kb on + strand, within GFF642at 319.403 kb on + strand, within GFF642at 319.403 kb on + strand, within GFF642at 319.403 kb on + strand, within GFF642at 319.547 kb on + strand, within GFF643at 319.548 kb on - strand, within GFF643at 319.688 kb on + strand, within GFF643at 319.688 kb on + strand, within GFF643at 319.689 kb on - strand, within GFF643at 319.689 kb on - strand, within GFF643at 319.689 kb on - strand, within GFF643at 319.689 kb on - strand, within GFF643at 319.772 kb on + strand, within GFF643at 319.773 kb on - strand, within GFF643at 319.773 kb on - strand, within GFF643at 319.773 kb on - strand, within GFF643at 319.979 kb on - strand, within GFF644at 320.041 kb on + strand, within GFF644at 320.042 kb on - strand, within GFF644at 320.042 kb on - strand, within GFF644at 320.042 kb on - strand, within GFF644at 320.042 kb on - strand, within GFF644at 320.056 kb on + strand, within GFF644at 320.056 kb on + strand, within GFF644at 320.057 kb on - strand, within GFF644at 320.299 kb on + strand, within GFF644at 320.299 kb on + strand, within GFF644at 320.299 kb on + strand, within GFF644at 320.299 kb on + strand, within GFF644at 320.300 kb on - strand, within GFF644at 320.300 kb on - strand, within GFF644at 320.462 kb on + strandat 320.462 kb on + strandat 320.462 kb on + strandat 320.463 kb on - strandat 320.463 kb on - strandat 320.463 kb on - strandat 320.463 kb on - strandat 320.463 kb on - strandat 320.463 kb on - strandat 320.470 kb on + strandat 320.470 kb on + strandat 320.470 kb on + strandat 320.470 kb on + strandat 320.470 kb on + strandat 320.471 kb on - strandat 320.471 kb on - strandat 320.471 kb on - strandat 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.754 kb on - strand, within GFF645at 320.754 kb on - strand, within GFF645at 320.754 kb on - strand, within GFF645

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
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318,631 - +0.6
318,643 + +0.1
318,643 + +0.0
318,643 + -0.0
318,757 + -0.3
318,757 + +0.0
318,758 - +1.5
318,758 - -0.1
318,758 - +0.3
318,758 - -0.5
318,758 - +1.0
318,788 + -0.4
318,788 + +0.3
318,788 + -0.4
318,788 + -0.2
318,788 + +0.2
318,789 - -5.0
318,790 + -0.7
318,791 - -1.9
318,791 - -2.6
318,791 - -1.2
319,010 + +1.2
319,016 + -0.2
319,016 + +0.7
319,017 - +0.9
319,017 - +0.3
319,017 - +0.2
319,062 + +0.4
319,063 - +0.3
319,063 - -0.3
319,118 + GFF642 0.12 +0.3
319,118 + GFF642 0.12 -0.5
319,118 + GFF642 0.12 +0.5
319,118 + GFF642 0.12 +1.6
319,119 - GFF642 0.12 +0.2
319,119 - GFF642 0.12 +0.7
319,119 - GFF642 0.12 +0.4
319,215 + GFF642 0.36 +0.7
319,216 - GFF642 0.37 +0.3
319,216 - GFF642 0.37 +0.6
319,386 + GFF642 0.80 +0.1
319,386 + GFF642 0.80 -0.6
319,387 - GFF642 0.80 -0.1
319,387 - GFF642 0.80 -0.6
319,387 - GFF642 0.80 -0.1
319,387 - GFF642 0.80 -0.2
319,387 - GFF642 0.80 +0.2
319,403 + GFF642 0.84 +0.7
319,403 + GFF642 0.84 -0.4
319,403 + GFF642 0.84 -0.2
319,403 + GFF642 0.84 -0.7
319,547 + GFF643 0.22 +0.0
319,548 - GFF643 0.22 -0.1
319,688 + GFF643 0.61 -0.0
319,688 + GFF643 0.61 +0.6
319,689 - GFF643 0.61 +0.6
319,689 - GFF643 0.61 +0.2
319,689 - GFF643 0.61 +0.2
319,689 - GFF643 0.61 +1.5
319,772 + GFF643 0.84 -2.0
319,773 - GFF643 0.84 +0.6
319,773 - GFF643 0.84 +1.5
319,773 - GFF643 0.84 +0.4
319,979 - GFF644 0.22 -0.4
320,041 + GFF644 0.33 +0.0
320,042 - GFF644 0.34 -0.4
320,042 - GFF644 0.34 +0.2
320,042 - GFF644 0.34 +0.2
320,042 - GFF644 0.34 +1.0
320,056 + GFF644 0.36 +0.3
320,056 + GFF644 0.36 +0.0
320,057 - GFF644 0.36 +0.2
320,299 + GFF644 0.81 -0.1
320,299 + GFF644 0.81 +0.3
320,299 + GFF644 0.81 +0.1
320,299 + GFF644 0.81 -0.1
320,300 - GFF644 0.81 +0.2
320,300 - GFF644 0.81 +1.5
320,462 + +0.2
320,462 + +0.2
320,462 + -0.2
320,463 - +0.2
320,463 - -0.3
320,463 - -0.4
320,463 - -0.7
320,463 - +0.2
320,463 - -0.6
320,470 + -0.4
320,470 + -0.0
320,470 + +0.5
320,470 + +0.7
320,470 + +0.5
320,471 - -0.3
320,471 - +0.4
320,471 - -0.3
320,753 + GFF645 0.13 +0.6
320,753 + GFF645 0.13 +0.3
320,753 + GFF645 0.13 +2.3
320,753 + GFF645 0.13 -0.2
320,753 + GFF645 0.13 -0.7
320,753 + GFF645 0.13 -0.2
320,753 + GFF645 0.13 +0.2
320,754 - GFF645 0.13 +1.1
320,754 - GFF645 0.13 +0.5
320,754 - GFF645 0.13 -0.7

Or see this region's nucleotide sequence