Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF620 and GFF621 are separated by 2 nucleotides GFF621 and GFF622 overlap by 4 nucleotides GFF622 and GFF623 overlap by 4 nucleotides
GFF620 - Enoyl-CoA hydratase (EC 4.2.1.17), at 296,414 to 297,208
GFF620
GFF621 - Phenylacetic acid degradation protein PaaD, thioesterase, at 297,211 to 297,651
GFF621
GFF622 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 297,648 to 298,943
GFF622
GFF623 - protease, putative, at 298,940 to 300,754
GFF623
Position (kb) 297
298
299 Strain fitness (log2 ratio) -1
0
1 at 297.149 kb on + strand at 297.150 kb on - strand at 297.547 kb on + strand, within GFF621 at 297.547 kb on + strand, within GFF621 at 297.547 kb on + strand, within GFF621 at 297.867 kb on + strand, within GFF622 at 297.867 kb on + strand, within GFF622 at 297.868 kb on - strand, within GFF622 at 297.868 kb on - strand, within GFF622 at 297.868 kb on - strand, within GFF622 at 298.050 kb on + strand, within GFF622 at 298.051 kb on - strand, within GFF622 at 298.089 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on - strand, within GFF622 at 298.204 kb on - strand, within GFF622 at 298.204 kb on - strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.354 kb on - strand, within GFF622 at 298.441 kb on - strand, within GFF622 at 298.713 kb on + strand, within GFF622 at 298.714 kb on - strand, within GFF622 at 298.941 kb on + strand at 298.941 kb on + strand at 299.379 kb on + strand, within GFF623 at 299.544 kb on + strand, within GFF623 at 299.545 kb on - strand, within GFF623 at 299.545 kb on - strand, within GFF623 at 299.547 kb on + strand, within GFF623 at 299.547 kb on + strand, within GFF623 at 299.547 kb on + strand, within GFF623 at 299.548 kb on - strand, within GFF623 at 299.587 kb on - strand, within GFF623 at 299.589 kb on + strand, within GFF623 at 299.590 kb on - strand, within GFF623 at 299.590 kb on - strand, within GFF623 at 299.590 kb on - strand, within GFF623 at 299.688 kb on + strand, within GFF623 at 299.688 kb on + strand, within GFF623 at 299.689 kb on - strand, within GFF623 at 299.689 kb on - strand, within GFF623 at 299.736 kb on + strand, within GFF623 at 299.739 kb on + strand, within GFF623 at 299.793 kb on + strand, within GFF623 at 299.794 kb on - strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.851 kb on - strand, within GFF623
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 297,149 + +0.4 297,150 - -0.1 297,547 + GFF621 0.76 +0.1 297,547 + GFF621 0.76 -0.1 297,547 + GFF621 0.76 +0.2 297,867 + GFF622 0.17 -0.9 297,867 + GFF622 0.17 -0.3 297,868 - GFF622 0.17 -0.1 297,868 - GFF622 0.17 -0.9 297,868 - GFF622 0.17 -0.2 298,050 + GFF622 0.31 -1.0 298,051 - GFF622 0.31 -1.0 298,089 + GFF622 0.34 +0.3 298,203 + GFF622 0.43 -0.1 298,203 + GFF622 0.43 -0.1 298,203 + GFF622 0.43 +0.1 298,203 + GFF622 0.43 -0.5 298,203 - GFF622 0.43 +0.3 298,204 - GFF622 0.43 +0.1 298,204 - GFF622 0.43 -0.9 298,353 + GFF622 0.54 -1.0 298,353 + GFF622 0.54 -0.6 298,353 + GFF622 0.54 +0.2 298,353 + GFF622 0.54 +0.3 298,354 - GFF622 0.54 -0.3 298,441 - GFF622 0.61 +0.4 298,713 + GFF622 0.82 +0.2 298,714 - GFF622 0.82 -1.1 298,941 + -0.1 298,941 + -0.2 299,379 + GFF623 0.24 +0.5 299,544 + GFF623 0.33 -0.2 299,545 - GFF623 0.33 -0.1 299,545 - GFF623 0.33 +0.2 299,547 + GFF623 0.33 -0.5 299,547 + GFF623 0.33 -0.3 299,547 + GFF623 0.33 -0.6 299,548 - GFF623 0.33 -0.3 299,587 - GFF623 0.36 +0.4 299,589 + GFF623 0.36 +0.5 299,590 - GFF623 0.36 +0.2 299,590 - GFF623 0.36 +0.1 299,590 - GFF623 0.36 +0.3 299,688 + GFF623 0.41 -0.3 299,688 + GFF623 0.41 -0.4 299,689 - GFF623 0.41 +0.1 299,689 - GFF623 0.41 -0.1 299,736 + GFF623 0.44 +0.1 299,739 + GFF623 0.44 -0.2 299,793 + GFF623 0.47 +0.9 299,794 - GFF623 0.47 +0.0 299,850 + GFF623 0.50 -0.3 299,850 + GFF623 0.50 -0.9 299,850 + GFF623 0.50 -0.9 299,850 + GFF623 0.50 +0.6 299,851 - GFF623 0.50 +0.0
Or see this region's nucleotide sequence