Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF610 and GFF611 overlap by 4 nucleotides GFF611 and GFF612 overlap by 11 nucleotides GFF612 and GFF613 are separated by 6 nucleotides
GFF610 - Putative sensory histidine kinase YfhA, at 286,528 to 287,940
GFF610
GFF611 - Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168), at 287,937 to 288,620
GFF611
GFF612 - Putative sensor-like histidine kinase YfhK, at 288,610 to 290,028
GFF612
GFF613 - tRNA-i(6)A37 methylthiotransferase, at 290,035 to 291,390
GFF613
Position (kb) 288
289
290
291 Strain fitness (log2 ratio) -1
0
1
2 at 287.610 kb on - strand, within GFF610 at 287.610 kb on - strand, within GFF610 at 287.610 kb on - strand, within GFF610 at 288.346 kb on + strand, within GFF611 at 288.347 kb on - strand, within GFF611 at 288.347 kb on - strand, within GFF611 at 288.611 kb on + strand at 288.611 kb on + strand at 288.612 kb on - strand at 288.612 kb on - strand at 288.695 kb on + strand at 288.696 kb on - strand at 288.696 kb on - strand at 288.696 kb on - strand at 288.696 kb on - strand at 288.696 kb on - strand at 288.696 kb on - strand at 288.764 kb on + strand, within GFF612 at 288.765 kb on - strand, within GFF612 at 288.765 kb on - strand, within GFF612 at 288.765 kb on - strand, within GFF612 at 289.710 kb on - strand, within GFF612 at 289.710 kb on - strand, within GFF612 at 290.537 kb on + strand, within GFF613 at 290.538 kb on - strand, within GFF613 at 290.538 kb on - strand, within GFF613 at 290.538 kb on - strand, within GFF613 at 290.538 kb on - strand, within GFF613 at 290.639 kb on + strand, within GFF613 at 290.640 kb on - strand, within GFF613 at 290.688 kb on - strand, within GFF613 at 290.688 kb on - strand, within GFF613 at 290.723 kb on + strand, within GFF613 at 290.724 kb on - strand, within GFF613 at 290.724 kb on - strand, within GFF613 at 290.724 kb on - strand, within GFF613 at 290.724 kb on - strand, within GFF613 at 290.724 kb on - strand, within GFF613 at 290.894 kb on + strand, within GFF613 at 290.895 kb on - strand, within GFF613 at 290.895 kb on - strand, within GFF613 at 290.909 kb on + strand, within GFF613 at 290.909 kb on + strand, within GFF613 at 290.909 kb on + strand, within GFF613 at 290.910 kb on - strand, within GFF613 at 290.910 kb on - strand, within GFF613 at 290.918 kb on + strand, within GFF613 at 290.918 kb on + strand, within GFF613 at 290.918 kb on + strand, within GFF613
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 287,610 - GFF610 0.77 -0.1 287,610 - GFF610 0.77 -0.3 287,610 - GFF610 0.77 -1.5 288,346 + GFF611 0.60 -0.2 288,347 - GFF611 0.60 +0.2 288,347 - GFF611 0.60 -0.1 288,611 + -0.1 288,611 + +0.4 288,612 - +0.2 288,612 - -0.3 288,695 + +0.0 288,696 - -0.1 288,696 - -0.2 288,696 - +0.0 288,696 - +0.3 288,696 - -0.7 288,696 - -0.8 288,764 + GFF612 0.11 -0.2 288,765 - GFF612 0.11 +0.6 288,765 - GFF612 0.11 +2.3 288,765 - GFF612 0.11 -0.1 289,710 - GFF612 0.78 +0.5 289,710 - GFF612 0.78 +0.2 290,537 + GFF613 0.37 +0.2 290,538 - GFF613 0.37 +0.3 290,538 - GFF613 0.37 -0.6 290,538 - GFF613 0.37 -1.3 290,538 - GFF613 0.37 +0.0 290,639 + GFF613 0.45 +0.0 290,640 - GFF613 0.45 -0.2 290,688 - GFF613 0.48 +0.2 290,688 - GFF613 0.48 -1.3 290,723 + GFF613 0.51 -0.0 290,724 - GFF613 0.51 +0.2 290,724 - GFF613 0.51 +0.1 290,724 - GFF613 0.51 +0.3 290,724 - GFF613 0.51 +0.1 290,724 - GFF613 0.51 -1.3 290,894 + GFF613 0.63 +1.0 290,895 - GFF613 0.63 +0.8 290,895 - GFF613 0.63 -0.1 290,909 + GFF613 0.64 -0.7 290,909 + GFF613 0.64 -0.0 290,909 + GFF613 0.64 -0.3 290,910 - GFF613 0.65 +0.3 290,910 - GFF613 0.65 +0.6 290,918 + GFF613 0.65 -0.2 290,918 + GFF613 0.65 +1.9 290,918 + GFF613 0.65 +2.5
Or see this region's nucleotide sequence